mRNA_H-paniculata_contig730.15271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig730.15271.1
Unique NamemRNA_H-paniculata_contig730.15271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig730.15271.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.280e-29
Identity = 108/252 (42.86%), Postives = 139/252 (55.16%), Query Frame = -2 
Query:  864 AYLKHFQAMVAAKAESMCDTTRGAELELELEELAARIAPILENRQRTIARLAATRARVSRLAVSTCSDALRISNATEPSALSAGASSSESKSAGQRVGEAGGGEMMPVGXXASGSXXXXGRSTPADTE--------FSGLEEGVLEPKVSMLIGAIAELPGPLKAVLRELPELTSSLTRTVQSVEAAIGMKESKTEALLAKAPPAPLGNRGGRAGGVTGAAGIDAGGLLP----PPAVARAAARATRVEQAK 1583
            AYL+ FQA VA K   +C+     E   E +EL   I     + +   +RL ATRARV+RL+  TC DALR+S A +  A    A    S +  +R  E GG   + +   A   XXXX                 F GLE GV+EPKVS LIG +AELPGPLK+VL+E+PELT+SL  +VQ  EAAI   +S+TEALL KAPP PL ++ G+  G           ++     PP  ARAAAR  RV+QA+
Sbjct:   41 AYLRAFQAAVADKVRDLCEVQDARESREE-DELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRAC---AVLEASTAHARRESETGGPLPLRIDDAAXXXXXXXXXXXXXXXXXXXXXXGIFQGLETGVVEPKVSALIGKMAELPGPLKSVLQEIPELTASLAVSVQEAEAAIKAGQSRTEALLGKAPPTPLSSKKGK--GAXXXXXXXXANVVEDERYPPEDARAAAREARVQQAR 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig730.15271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI3.280e-2942.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig730contigH-paniculata_contig730:19514..21451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1938
Cds size1254
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.1710591-UTR-H-paniculata_contig730:19513..201971622930891.1710591-UTR-H-paniculata_contig730:19513..20197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig730 19514..20197 +
1691481498.66773-UTR-H-paniculata_contig730:19513..201971691481498.66773-UTR-H-paniculata_contig730:19513..20197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig730 19514..20197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.202374-CDS-H-paniculata_contig730:20197..214511622930891.202374-CDS-H-paniculata_contig730:20197..21451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig730 20198..21451 +
1691481498.6784825-CDS-H-paniculata_contig730:20197..214511691481498.6784825-CDS-H-paniculata_contig730:20197..21451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig730 20198..21451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig730.15271.1prot_H-paniculata_contig730.15271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig730 20198..21451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig730.15271.1

>prot_H-paniculata_contig730.15271.1 ID=prot_H-paniculata_contig730.15271.1|Name=mRNA_H-paniculata_contig730.15271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=418bp
MHAKETATSKKIAASNGAWSPSTLSAPHASFSFLPYFQLRTISPRRAAAD
APRPAPARWIFACSTLVARAAALATAGGGNNPPASMPAAPVTPPARPPLF
PNGAGGALAKRASVLLSFIPIAASTDCTVLVNDDVSSGNSRSTALSGPGS
SAMAPISIDTLGSRTPSSKPENSVSAGVLRPPPEAEPLAPPPTGIISPPP
ASPTRCPADFDSDEDAPALRAEGSVALEMRRASEHVDTAKRETRARVAAS
RAMVRCLFSRIGAIRAANSSSSSSSSAPRVVSHIDSALAATMAWKCFKYA
LAIRSLESPPSPRFFFTLWSATPSSSFVFATILCTVPSTTMPIRRRISMS
ISFVPATNNGGMPAFSSRVVLEVPLLSSGAFRFLYDGGGKREILDSVDID
AMVTFGYTISANKPPNV*
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mRNA from alignment at H-paniculata_contig730:19514..21451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig730.15271.1 ID=mRNA_H-paniculata_contig730.15271.1|Name=mRNA_H-paniculata_contig730.15271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1938bp|location=Sequence derived from alignment at H-paniculata_contig730:19514..21451+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGGTGTGATGATGATCTTAAAAATGTTCGAAATACATATGACGCAGCA
GTACCATATATGTAGAAAAAAAAAATCTAGGCAATTTCGGGAACTTCGTG
CTCGCATGTATATTTTCCGTTGCAGCGCAAGCCTAAAACAGACACGTGAT
CGACGACGCATAACACCTCACGAACGAATCTTCTTTACATACAATGCCGG
CCCGCTCATAAGAAGCGGCGACTGTAGTAAAACAACATCTAAGGTTGGCA
GCAGGCCGCAACTTGAAATAACATTAACGTGTGTTTATTTCATAGCCTGA
TCGGCACAACTGCCACCGACAATACAGTATGTAGTAAAAAACACCTGAAA
ATCCTTGAAAACCTCTGAGCATCAATTTAGATACACAACTAACTTGGTGG
CATTCCGCCTCTGGCGAAGCTGCGCGCCGAACGAGGGCCATTCGCTGCGT
ACGACTTTCGTGGCGGGATCACAATAAACCAATTAGGTGATACCTTTTTA
CGTCAACGTTGCCGACGATAGTCTCCCCGCCCGCCCTGCAAAAATACGAG
TGGGCAAGCCGAAAAAAAACTCACCATGAACAGCAATCAGAAAGCAAAAG
TGGACTGCAACAAACTCAAAGGACAAAACCTGAGCTCTGCCAATCTTCCC
CTTCCAGGCGTTACAAGTTCCTTGCGGAGGAGGTATGCATGCAAAAGAAA
CAGCAACCAGCAAAAAAATAGCAGCTAGCAACGGCGCTTGGTCACCTTCA
ACCCTCTCCGCCCCTCATGCCTCATTCTCCTTCCTTCCATACTTTCAACT
GCGGACAATTTCCCCGAGACGAGCGGCCGCTGACGCCCCCCGCCCCGCCC
CTGCCCGTTGGATCTTCGCCTGCTCTACCCTCGTCGCGCGCGCGGCCGCC
CTCGCAACCGCGGGCGGAGGCAATAACCCTCCCGCGTCGATGCCCGCCGC
ACCGGTAACTCCGCCCGCGCGTCCTCCTCTGTTTCCCAACGGCGCTGGAG
GCGCCTTGGCCAAGAGGGCCTCGGTCTTGCTCTCCTTCATCCCGATCGCA
GCCTCTACCGACTGCACGGTTCTGGTCAACGACGACGTGAGCTCGGGCAA
CTCTCGCAGCACCGCCTTGAGCGGCCCCGGCAGCTCGGCAATGGCGCCTA
TCAGCATCGACACCTTGGGCTCAAGAACTCCCTCTTCCAAGCCTGAGAAC
TCAGTGTCTGCCGGGGTACTTCGACCGCCGCCCGAAGCCGAGCCGCTTGC
TCCGCCCCCGACCGGCATCATCTCGCCACCGCCAGCCTCGCCCACCCGCT
GTCCCGCGGATTTTGACTCGGATGAGGACGCACCAGCACTGAGGGCAGAG
GGTTCGGTCGCGTTAGAGATGCGGAGAGCGTCCGAGCACGTGGATACAGC
CAAACGGGAAACGCGCGCCCGGGTAGCGGCGAGTCGGGCGATGGTGCGTT
GCCTGTTCTCCAGGATAGGCGCGATTCGAGCCGCCAACTCTTCGAGCTCC
AGCTCTAGCTCTGCACCTCGTGTCGTATCGCACATAGACTCCGCCTTGGC
CGCGACCATGGCCTGGAAATGCTTCAAGTACGCCTTAGCAATTCGCTCAC
TCGAATCGCCGCCATCTCCGCGTTTCTTTTTCACGCTATGGTCGGCGACG
CCCTCTAGTTCTTTCGTTTTCGCCACCATCCTGTGCACAGTGCCCTCCAC
GACCATGCCCATCCGGCGCCGCATTTCCATGAGCATCTCTTTCGTCCCTG
CAACCAACAACGGCGGTATGCCCGCTTTCTCCTCGAGAGTTGTACTTGAG
GTACCGTTGTTGTCATCGGGCGCTTTTCGCTTTCTATACGATGGCGGTGG
CAAAAGGGAAATTCTAGATTCTGTCGATATAGATGCCATGGTGACGTTCG
GGTACACGATATCCGCGAACAAACCCCCTAACGTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig730:19514..21451+

>mRNA_H-paniculata_contig730.15271.1 ID=mRNA_H-paniculata_contig730.15271.1|Name=mRNA_H-paniculata_contig730.15271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2508bp|location=Sequence derived from alignment at H-paniculata_contig730:19514..21451+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATGCAAAAGAAACAGCAACCAGCAAAAAAATAGCAGCTAGCAACGG
CGCTTGGTCACCTTCAACCCTCTCCGCCCCTCATGCCTCATTCTCCTTCC
TTCCATACTTTCAACTGCGGACAATTTCCCCGAGACGAGCGGCCGCTGAC
GCCCCCCGCCCCGCCCCTGCCCGTTGGATCTTCGCCTGCTCTACCCTCGT
CGCGCGCGCGGCCGCCCTCGCAACCGCGGGCGGAGGCAATAACCCTCCCG
CGTCGATGCCCGCCGCACCGGTAACTCCGCCCGCGCGTCCTCCTCTGTTT
CCCAACGGCGCTGGAGGCGCCTTGGCCAAGAGGGCCTCGGTCTTGCTCTC
CTTCATCCCGATCGCAGCCTCTACCGACTGCACGGTTCTGGTCAACGACG
ACGTGAGCTCGGGCAACTCTCGCAGCACCGCCTTGAGCGGCCCCGGCAGC
TCGGCAATGGCGCCTATCAGCATCGACACCTTGGGCTCAAGAACTCCCTC
TTCCAAGCCTGAGAACTCAGTGTCTGCCGGGGTACTTCGACCGCCGCCCG
AAGCCGAGCCGCTTGCTCCGCCCCCGACCGGCATCATCTCGCCACCGCCA
GCCTCGCCCACCCGCTGTCCCGCGGATTTTGACTCGGATGAGGACGCACC
AGCACTGAGGGCAGAGGGTTCGGTCGCGTTAGAGATGCGGAGAGCGTCCG
AGCACGTGGATACAGCCAAACGGGAAACGCGCGCCCGGGTAGCGGCGAGT
CGGGCGATGGTGCGTTGCCTGTTCTCCAGGATAGGCGCGATTCGAGCCGC
CAACTCTTCGAGCTCCAGCTCTAGCTCTGCACCTCGTGTCGTATCGCACA
TAGACTCCGCCTTGGCCGCGACCATGGCCTGGAAATGCTTCAAGTACGCC
TTAGCAATTCGCTCACTCGAATCGCCGCCATCTCCGCGTTTCTTTTTCAC
GCTATGGTCGGCGACGCCCTCTAGTTCTTTCGTTTTCGCCACCATCCTGT
GCACAGTGCCCTCCACGACCATGCCCATCCGGCGCCGCATTTCCATGAGC
ATCTCTTTCGTCCCTGCAACCAACAACGGCGGTATGCCCGCTTTCTCCTC
GAGAGTTGTACTTGAGGTACCGTTGTTGTCATCGGGCGCTTTTCGCTTTC
TATACGATGGCGGTGGCAAAAGGGAAATTCTAGATTCTGTCGATATAGAT
GCCATGGTGACGTTCGGGTACACGATATCCGCGAACAAACCCCCTAACGT
TTGAATGCATGCAAAAGAAACAGCAACCAGCAAAAAAATAGCAGCTAGCA
ACGGCGCTTGGTCACCTTCAACCCTCTCCGCCCCTCATGCCTCATTCTCC
TTCCTTCCATACTTTCAACTGCGGACAATTTCCCCGAGACGAGCGGCCGC
TGACGCCCCCCGCCCCGCCCCTGCCCGTTGGATCTTCGCCTGCTCTACCC
TCGTCGCGCGCGCGGCCGCCCTCGCAACCGCGGGCGGAGGCAATAACCCT
CCCGCGTCGATGCCCGCCGCACCGGTAACTCCGCCCGCGCGTCCTCCTCT
GTTTCCCAACGGCGCTGGAGGCGCCTTGGCCAAGAGGGCCTCGGTCTTGC
TCTCCTTCATCCCGATCGCAGCCTCTACCGACTGCACGGTTCTGGTCAAC
GACGACGTGAGCTCGGGCAACTCTCGCAGCACCGCCTTGAGCGGCCCCGG
CAGCTCGGCAATGGCGCCTATCAGCATCGACACCTTGGGCTCAAGAACTC
CCTCTTCCAAGCCTGAGAACTCAGTGTCTGCCGGGGTACTTCGACCGCCG
CCCGAAGCCGAGCCGCTTGCTCCGCCCCCGACCGGCATCATCTCGCCACC
GCCAGCCTCGCCCACCCGCTGTCCCGCGGATTTTGACTCGGATGAGGACG
CACCAGCACTGAGGGCAGAGGGTTCGGTCGCGTTAGAGATGCGGAGAGCG
TCCGAGCACGTGGATACAGCCAAACGGGAAACGCGCGCCCGGGTAGCGGC
GAGTCGGGCGATGGTGCGTTGCCTGTTCTCCAGGATAGGCGCGATTCGAG
CCGCCAACTCTTCGAGCTCCAGCTCTAGCTCTGCACCTCGTGTCGTATCG
CACATAGACTCCGCCTTGGCCGCGACCATGGCCTGGAAATGCTTCAAGTA
CGCCTTAGCAATTCGCTCACTCGAATCGCCGCCATCTCCGCGTTTCTTTT
TCACGCTATGGTCGGCGACGCCCTCTAGTTCTTTCGTTTTCGCCACCATC
CTGTGCACAGTGCCCTCCACGACCATGCCCATCCGGCGCCGCATTTCCAT
GAGCATCTCTTTCGTCCCTGCAACCAACAACGGCGGTATGCCCGCTTTCT
CCTCGAGAGTTGTACTTGAGGTACCGTTGTTGTCATCGGGCGCTTTTCGC
TTTCTATACGATGGCGGTGGCAAAAGGGAAATTCTAGATTCTGTCGATAT
AGATGCCATGGTGACGTTCGGGTACACGATATCCGCGAACAAACCCCCTA
ACGTTTGA
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