mRNA_H-paniculata_contig72915.15263.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig72915.15263.1
Unique NamemRNA_H-paniculata_contig72915.15263.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig72915.15263.1 vs. uniprot
Match: D7FI44_ECTSI (Bulb-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI44_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.030e-23
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 QSMGPNVATPELFAEALFTDTSSWTVIDRGPFEALLPVTEVMENMLSSFDPAS 159
            +SMGPNVATPELFAEALFTDTSSWTVIDRGPFEALLPVT V+ENML +FDPAS
Sbjct:  511 RSMGPNVATPELFAEALFTDTSSWTVIDRGPFEALLPVTAVLENMLVNFDPAS 563
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BLAST of mRNA_H-paniculata_contig72915.15263.1 vs. uniprot
Match: A0A6H5JKM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKM5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 9.640e-23
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 QSMGPNVATPELFAEALFTDTSSWTVIDRGPFEALLPVTEVMENMLSSFDPAS 159
            +SMGPNVATPELFAEALFTDTSSWTVIDRGPFEAL+P+T V+ENML +FDPAS
Sbjct:  399 RSMGPNVATPELFAEALFTDTSSWTVIDRGPFEALVPITVVLENMLVNFDPAS 451
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BLAST of mRNA_H-paniculata_contig72915.15263.1 vs. uniprot
Match: D7FI45_ECTSI (MACPF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI45_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.800e-22
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QSMGPNVATPELFAEALFTDTSSWTVIDRGPFEALLPVTEVMENMLSSFDPAS 159
            +SMGPNVATPELFAEALFTDTSSWTVIDRGP EALLP+T V+ENM+ +FDPAS
Sbjct:  697 RSMGPNVATPELFAEALFTDTSSWTVIDRGPMEALLPITSVLENMVDTFDPAS 749
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72915.15263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI44_ECTSI2.030e-2390.57Bulb-type lectin domain-containing protein n=1 Tax... [more]
A0A6H5JKM5_9PHAE9.640e-2386.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI45_ECTSI1.800e-2284.91MACPF domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72915contigH-paniculata_contig72915:483..641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D7FI45
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2E1A0@1,2S8MV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size153
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.436868-UTR-H-paniculata_contig72915:482..4881622930889.436868-UTR-H-paniculata_contig72915:482..488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig72915 483..488 +
1691481497.8221626-UTR-H-paniculata_contig72915:482..4881691481497.8221626-UTR-H-paniculata_contig72915:482..488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig72915 483..488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.4628794-CDS-H-paniculata_contig72915:488..6411622930889.4628794-CDS-H-paniculata_contig72915:488..641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72915 489..641 +
1691481497.8316944-CDS-H-paniculata_contig72915:488..6411691481497.8316944-CDS-H-paniculata_contig72915:488..641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72915 489..641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72915.15263.1prot_H-paniculata_contig72915.15263.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig72915 489..641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig72915.15263.1

>prot_H-paniculata_contig72915.15263.1 ID=prot_H-paniculata_contig72915.15263.1|Name=mRNA_H-paniculata_contig72915.15263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MGPNVATPELFAEALFTDTSSWTVIDRGPFEALLPVTEVMENMLSSFDPA
S
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mRNA from alignment at H-paniculata_contig72915:483..641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig72915.15263.1 ID=mRNA_H-paniculata_contig72915.15263.1|Name=mRNA_H-paniculata_contig72915.15263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig72915:483..641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCGATGGGGCCGAACGTCGCTACCCCTGAGCTATTCGCTGAAGCGCT
GTTCACCGACACGTCTTCGTGGACGGTAATCGACCGCGGACCGTTCGAAG
CCTTGTTGCCAGTTACCGAGGTCATGGAAAACATGCTGAGTTCGTTCGAT
CCGGCATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig72915:483..641+

>mRNA_H-paniculata_contig72915.15263.1 ID=mRNA_H-paniculata_contig72915.15263.1|Name=mRNA_H-paniculata_contig72915.15263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig72915:483..641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCCGAACGTCGCTACCCCTGAGCTATTCGCTGAAGCGCTGTTCAC
CGACACGTCTTCGTGGACGGTAATCGACCGCGGACCGTTCGAAGCCTTGT
TGCCAGTTACCGAGGTCATGGAAAACATGCTGAGTTCGTTCGATCCGGCA
TCCATGGGGCCGAACGTCGCTACCCCTGAGCTATTCGCTGAAGCGCTGTT
CACCGACACGTCTTCGTGGACGGTAATCGACCGCGGACCGTTCGAAGCCT
TGTTGCCAGTTACCGAGGTCATGGAAAACATGCTGAGTTCGTTCGATCCG
GCATCC
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