mRNA_H-paniculata_contig729.15261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig729.15261.1
Unique NamemRNA_H-paniculata_contig729.15261.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: D7FQZ3_ECTSI (Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 9.340e-26
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    4 RYTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDVMSTFSVR 171
            +YT+GT VQI+P+ENTRLSGLYTSGG +CTQCEAEGFRRITFAQDRPDVMSTFSVR
Sbjct:  262 KYTVGTVVQIAPKENTRLSGLYTSGGNFCTQCEAEGFRRITFAQDRPDVMSTFSVR 317
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BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: A0A6H5KYN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.690e-21
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    4 RYTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDV 150
            +YT+GT VQI+P+ENTRLSGLYTSGG +CTQCEAEGFRRITFAQDRPDV
Sbjct:   61 KYTVGTVVQIAPKENTRLSGLYTSGGNFCTQCEAEGFRRITFAQDRPDV 109
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BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: E1V6U2_HALED (Aminopeptidase N n=9 Tax=Halomonas TaxID=2745 RepID=E1V6U2_HALED)

HSP 1 Score: 93.6 bits (231), Expect = 6.870e-21
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 ARYTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDVMSTFSV 168
            A ++L T+V+ISPEENT L GLY SGGM+CTQCEAEGFRRITF  DRPDVM+TFS 
Sbjct:   91 ASFSLDTEVEISPEENTALEGLYRSGGMFCTQCEAEGFRRITFYPDRPDVMATFST 146
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BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: A0A455UD13_9GAMM (Peptidase_M1_N domain-containing protein n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A455UD13_9GAMM)

HSP 1 Score: 88.2 bits (217), Expect = 1.130e-20
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    4 RYTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDVMSTFSV 168
            R+ L ++++I+P+ENT L GLY S GMYCTQCEAEGFRRITF  DRPDVM+TF V
Sbjct:   92 RFMLESEIEIAPQENTALEGLYQSNGMYCTQCEAEGFRRITFYPDRPDVMATFKV 146
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BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: A0A3N9U4W6_9GAMM (Aminopeptidase N n=15 Tax=Halomonadaceae TaxID=28256 RepID=A0A3N9U4W6_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 1.750e-20
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    7 YTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDVMSTFSV 168
            + L T+V+ISPE+NT LSGLY SGGM+CTQCEAEGFRRITF  DRPDVM+TFS 
Sbjct:   93 FVLDTEVEISPEDNTALSGLYRSGGMFCTQCEAEGFRRITFYPDRPDVMATFST 146
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BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: A0A847BJ84_9GAMM (Aminopeptidase N (Fragment) n=1 Tax=Halomonadaceae bacterium TaxID=2026746 RepID=A0A847BJ84_9GAMM)

HSP 1 Score: 89.4 bits (220), Expect = 2.680e-20
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 ARYTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDVMSTFSV 168
            AR+ L T+VQI+P ENT L GLY S G+YCTQCEAEGFRRIT+  DRPDVM+TFS 
Sbjct:   96 ARFCLETEVQIAPRENTALEGLYLSNGIYCTQCEAEGFRRITYFPDRPDVMTTFST 151
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BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: A0A2N7U0A0_9GAMM (Aminopeptidase N n=1 Tax=Halomonas endophytica TaxID=2033802 RepID=A0A2N7U0A0_9GAMM)

HSP 1 Score: 91.7 bits (226), Expect = 3.260e-20
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    4 RYTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDVMSTFSV 168
            R+ L T+V+I+PEENT L GLY S GMYCTQCEAEGFRRITF  DRPDVM+TFS 
Sbjct:   92 RFRLDTEVEIAPEENTALEGLYLSNGMYCTQCEAEGFRRITFYPDRPDVMATFST 146
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BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: A0A7C5N8P1_9GAMM (Aminopeptidase N (Fragment) n=1 Tax=Thiolapillus brandeum TaxID=1076588 RepID=A0A7C5N8P1_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 4.430e-20
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    7 YTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDVMSTFSVR 171
            + L ++V+I+PEENTRL GLY SGGM+CTQCEAEGFRRIT+  DRPDVM+ F+VR
Sbjct:   96 FVLESEVEIAPEENTRLEGLYRSGGMFCTQCEAEGFRRITWYLDRPDVMARFNVR 150
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BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: A0A291P4K8_9GAMM (Aminopeptidase N n=13 Tax=Halomonas TaxID=2745 RepID=A0A291P4K8_9GAMM)

HSP 1 Score: 91.3 bits (225), Expect = 4.460e-20
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    4 RYTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDVMSTFSV 168
            R+ L T+V+I+PE+NT L GLY SGGM+CTQCEAEGFRRITF  DRPDVM+TFS 
Sbjct:   92 RFLLDTEVEIAPEDNTALEGLYRSGGMFCTQCEAEGFRRITFYPDRPDVMATFST 146
[Close]
BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Match: A0A354CC25_9PROT (Aminopeptidase N (Fragment) n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A354CC25_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 4.810e-20
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    7 YTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDVMSTFSVR 171
            + L T+V ISPE+NT LSGLY SGG +CTQCEAEGFRRIT+  DRPDVMSTFSVR
Sbjct:   94 FELTTEVWISPEKNTELSGLYMSGGRFCTQCEAEGFRRITYWPDRPDVMSTFSVR 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig729.15261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ3_ECTSI9.340e-2687.50Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KYN1_9PHAE3.690e-2185.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
E1V6U2_HALED6.870e-2175.00Aminopeptidase N n=9 Tax=Halomonas TaxID=2745 RepI... [more]
A0A455UD13_9GAMM1.130e-2069.09Peptidase_M1_N domain-containing protein n=1 Tax=H... [more]
A0A3N9U4W6_9GAMM1.750e-2075.93Aminopeptidase N n=15 Tax=Halomonadaceae TaxID=282... [more]
A0A847BJ84_9GAMM2.680e-2071.43Aminopeptidase N (Fragment) n=1 Tax=Halomonadaceae... [more]
A0A2N7U0A0_9GAMM3.260e-2074.55Aminopeptidase N n=1 Tax=Halomonas endophytica Tax... [more]
A0A7C5N8P1_9GAMM4.430e-2070.91Aminopeptidase N (Fragment) n=1 Tax=Thiolapillus b... [more]
A0A291P4K8_9GAMM4.460e-2072.73Aminopeptidase N n=13 Tax=Halomonas TaxID=2745 Rep... [more]
A0A354CC25_9PROT4.810e-2076.36Aminopeptidase N (Fragment) n=1 Tax=Hyphomonadacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig729contigH-paniculata_contig729:32578..32751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.9e-21
Seed eggNOG ortholog2880.D7FQZ3
KEGG rclassRC00096,RC00141
KEGG koko:K01256,ko:K13725
KEGG ReactionR00899,R04951
KEGG Pathwayko00480,ko01100,map00480,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.metalloaminopeptidase activity
EggNOG OGsCOG0308@1,KOG1046@2759
EC3.4.11.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930888.9132464-CDS-H-paniculata_contig729:32577..327511622930888.9132464-CDS-H-paniculata_contig729:32577..32751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig729 32578..32751 +
1691481497.715366-CDS-H-paniculata_contig729:32577..327511691481497.715366-CDS-H-paniculata_contig729:32577..32751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig729 32578..32751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig729.15261.1prot_H-paniculata_contig729.15261.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig729 32578..32751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig729.15261.1

>prot_H-paniculata_contig729.15261.1 ID=prot_H-paniculata_contig729.15261.1|Name=mRNA_H-paniculata_contig729.15261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
ARYTLGTQVQISPEENTRLSGLYTSGGMYCTQCEAEGFRRITFAQDRPDV
MSTFSVR*
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mRNA from alignment at H-paniculata_contig729:32578..32751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig729.15261.1 ID=mRNA_H-paniculata_contig729.15261.1|Name=mRNA_H-paniculata_contig729.15261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig729:32578..32751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGGTACACGCTCGGAACGCAGGTGCAAATATCACCCGAGGAAAACAC
GAGACTGTCGGGTTTGTACACCTCTGGAGGCATGTATTGTACCCAGTGTG
AAGCAGAAGGGTTCCGCCGCATCACGTTCGCACAGGATCGTCCCGACGTC
ATGTCTACTTTTTCGGTGAGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig729:32578..32751+

>mRNA_H-paniculata_contig729.15261.1 ID=mRNA_H-paniculata_contig729.15261.1|Name=mRNA_H-paniculata_contig729.15261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig729:32578..32751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGGTACACGCTCGGAACGCAGGTGCAAATATCACCCGAGGAAAACAC
GAGACTGTCGGGTTTGTACACCTCTGGAGGCATGTATTGTACCCAGTGTG
AAGCAGAAGGGTTCCGCCGCATCACGTTCGCACAGGATCGTCCCGACGTC
ATGTCTACTTTTTCGGTGAGATAGGCCAGGTACACGCTCGGAACGCAGGT
GCAAATATCACCCGAGGAAAACACGAGACTGTCGGGTTTGTACACCTCTG
GAGGCATGTATTGTACCCAGTGTGAAGCAGAAGGGTTCCGCCGCATCACG
TTCGCACAGGATCGTCCCGACGTCATGTCTACTTTTTCGGTGAGATAG
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