mRNA_H-paniculata_contig7285.15259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7285.15259.1
Unique NamemRNA_H-paniculata_contig7285.15259.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7285.15259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7285contigH-paniculata_contig7285:5392..6113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size199
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930888.5714054-CDS-H-paniculata_contig7285:5393..55211622930888.5714054-CDS-H-paniculata_contig7285:5393..5521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7285 5394..5521 -
1691481497.5718136-CDS-H-paniculata_contig7285:5393..55211691481497.5718136-CDS-H-paniculata_contig7285:5393..5521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7285 5394..5521 -
1622930888.5936928-CDS-H-paniculata_contig7285:6046..61131622930888.5936928-CDS-H-paniculata_contig7285:6046..6113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7285 6047..6113 -
1691481497.5863512-CDS-H-paniculata_contig7285:6046..61131691481497.5863512-CDS-H-paniculata_contig7285:6046..6113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7285 6047..6113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7285.15259.1prot_H-paniculata_contig7285.15259.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7285 5394..6113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7285.15259.1

>prot_H-paniculata_contig7285.15259.1 ID=prot_H-paniculata_contig7285.15259.1|Name=mRNA_H-paniculata_contig7285.15259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
GAVGWHRYLARIHGRAVSGERRGIQYTFRSEEETWWGADLRCWGHPCLPL
VFNTMVDGPFLFKWL
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mRNA from alignment at H-paniculata_contig7285:5392..6113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7285.15259.1 ID=mRNA_H-paniculata_contig7285.15259.1|Name=mRNA_H-paniculata_contig7285.15259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=722bp|location=Sequence derived from alignment at H-paniculata_contig7285:5392..6113- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCCGTTGGATGGCATCGCTATCTCGCGAGAATCCACGGTAGAGCTGT
GTCTGGAGAACGGAGAGGTACGCACAACGAGTGACCGGGGGTGTAGAGTG
AATGCAAAGAGCTGCTATCATAGTGCCAAAAAAGAGCTTCACTCAATCGG
CTCATCCCTTCACCTTAAACATGCTGCTACACGAGAGGCATTGCACCCCC
CCTGACGAACGTGAACACTTGAAGCGTTCGTGACAAAATCGGCGCCTGGG
TTTTTCATATGTGTGGGCACATGAACACATTATTGATCCCCTGATGATAT
ATTCGTGTTGTTTTTTTTTTGTCATCATCGGGAGAACAAGGAGGGCGAAA
CCTTTTCTGAAACTTGTGCTGGGATAGATGTGTACATCCATTTTTCATAC
ACCAGTTCTACTATGATGTCTCCGTGACCCCCCCAGGCAAAGGTGCTCCC
GTTTTTTTTTGTTTTTTTTTACCATTATGGTATTCAGAGCAGTTATAGAT
GATCGCGGATACTTAGAACGAACGTATTCATGCTGATTAAACCTTCAACT
TGAGGCGAATATGTTCTAAATTTTTCGTTGACAATGCCCCAGGTATTCAG
TATACATTTCGGTCCGAGGAGGAAACGTGGTGGGGAGCAGACTTGAGATG
CTGGGGACACCCCTGTTTACCACTTGTTTTTAACACAATGGTTGACGGTC
CATTTTTGTTTAAATGGCTCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig7285:5392..6113-

>mRNA_H-paniculata_contig7285.15259.1 ID=mRNA_H-paniculata_contig7285.15259.1|Name=mRNA_H-paniculata_contig7285.15259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig7285:5392..6113- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCCGTTGGATGGCATCGCTATCTCGCGAGAATCCACGGTAGAGCTGT
GTCTGGAGAACGGAGAGGGAGCCGTTGGATGGCATCGCTATCTCGCGAGA
ATCCACGGTAGAGCTGTGTCTGGAGAACGGAGAGGTATTCAGTATACATT
TCGGTCCGAGGAGGAAACGTGGTGGGGAGCAGACTTGAGATGCTGGGGAC
ACCCCTGTTTACCACTTGTTTTTAACACAATGGTTGACGGTCCATTTTTG
TTTAAATGGCTCGTATTCAGTATACATTTCGGTCCGAGGAGGAAACGTGG
TGGGGAGCAGACTTGAGATGCTGGGGACACCCCTGTTTACCACTTGTTTT
TAACACAATGGTTGACGGTCCATTTTTGTTTAAATGGCTC
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