mRNA_H-paniculata_contig7281.15254.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7281.15254.1
Unique NamemRNA_H-paniculata_contig7281.15254.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7281.15254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7281contigH-paniculata_contig7281:7148..10154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size3007
Cds size1821
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7281.15254.1prot_H-paniculata_contig7281.15254.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7281 7446..9266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.948691-UTR-H-paniculata_contig7281:7147..74451622930887.948691-UTR-H-paniculata_contig7281:7147..7445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7281 7148..7445 +
1691481497.316215-UTR-H-paniculata_contig7281:7147..74451691481497.316215-UTR-H-paniculata_contig7281:7147..7445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7281 7148..7445 +
1622930887.9885418-UTR-H-paniculata_contig7281:9266..101541622930887.9885418-UTR-H-paniculata_contig7281:9266..10154Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7281 9267..10154 +
1691481497.3413603-UTR-H-paniculata_contig7281:9266..101541691481497.3413603-UTR-H-paniculata_contig7281:9266..10154Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7281 9267..10154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.970866-CDS-H-paniculata_contig7281:7445..92661622930887.970866-CDS-H-paniculata_contig7281:7445..9266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7281 7446..9266 +
1691481497.3271832-CDS-H-paniculata_contig7281:7445..92661691481497.3271832-CDS-H-paniculata_contig7281:7445..9266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7281 7446..9266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7281.15254.1

>prot_H-paniculata_contig7281.15254.1 ID=prot_H-paniculata_contig7281.15254.1|Name=mRNA_H-paniculata_contig7281.15254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=607bp
MVNVVIKKCSHQGCSTRASYGVAGTKKAEFCAGHADDGMVNVVNKKCSHR
GCSAHASYGVAGTKKAELCSRHADEGMVNVVNKKCSHQGCSTQPSYGVAG
TKKAEFCAGHAGDGMVNVVDKKCSHQGCSTQPSYGVAGTKKAEFCAGHAG
DGMINVVSKKCSHQGCSTLPSYGVAGTKKAEFCGRHADDGMVNVVNKRCS
HLGCSTQPSYGVAGTKKAEFCARHADDGMVNVVIKKCSHQSCSARASYGV
AGTKKAEFCGRHADDGMVNVVMKKCSHRGCSAQPSYGVAGTKKAELCARH
ADDGMVNVVDKKCSHRGCSTQPSYGVAGTKKAEFCARHADDGMVNVVIKK
CSHQGCSTRASYGVAGTKKAELCGRHADDGMVNVVNKKCSHRGCSTRASY
GVAGTKKAELCARHADDVMVNVVIKKCSHQSCSTRASYGVVGTKKAEFCG
RHADDGMVNVVDKKYSQEVCSAQPSYGVAGTKKAELCAGHADDGMINVVD
KKCSQEGCSAQPSGPLQVKLEMASEDVDGHRCSTTVETGRKRHSALTVPS
YSGSFTSRECRSVKRARISCRSSTTEHLALRTPAAGMSSLDNGANLKTEV
AASVLQ*
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mRNA from alignment at H-paniculata_contig7281:7148..10154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7281.15254.1 ID=mRNA_H-paniculata_contig7281.15254.1|Name=mRNA_H-paniculata_contig7281.15254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3007bp|location=Sequence derived from alignment at H-paniculata_contig7281:7148..10154+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGACGATTTAGGAAGGGATCACGCCGGCGTTCTGGTCGCGAAGTGTC
GAGTGTTATCGCTACGACGATTCAACTTGTACAGGAGAACACAGTGCGGC
AGGCACGCATGGTGCTTTAGTCACGCTCATCGCTCCTTCTTGACTAGCAG
TCGGGAGGCGAAGTGGTGTGTTTAGGATTGGAAGACCATGCCATGCCAAC
AGAGAAAGTGTTCTCGCCAGGGCTGATGTACACAGCCGTCGTATGGGGTG
GCGGGGACGAAAAAGGCAGAGTTCTGTGCGCTGCATGCCGACGACGGGAT
GGTTAACGTGGTGATCAAAAAGTGCTCCCACCAGGGTTGCTCTACACGTG
CGTCGTATGGAGTGGCGGGCACGAAAAAGGCAGAGTTCTGTGCGGGGCAT
GCCGATGACGGGATGGTTAACGTGGTGAACAAGAAGTGTTCCCACCGGGG
CTGCTCTGCACATGCGTCGTATGGAGTGGCGGGGACGAAAAAGGCGGAGC
TCTGTTCGCGGCATGCCGACGAAGGGATGGTTAACGTGGTGAACAAGAAG
TGTTCCCACCAGGGTTGCTCTACACAGCCGTCGTATGGGGTGGCTGGGAC
GAAAAAGGCAGAGTTCTGTGCGGGGCATGCCGGCGACGGGATGGTTAACG
TGGTGGACAAGAAGTGTTCCCACCAGGGTTGCTCTACACAGCCGTCGTAT
GGAGTAGCGGGAACGAAAAAGGCAGAGTTCTGTGCGGGGCATGCCGGCGA
CGGAATGATTAACGTGGTGAGCAAGAAGTGTTCCCACCAGGGCTGCTCTA
CACTTCCGTCGTATGGAGTAGCGGGCACAAAAAAGGCAGAGTTCTGTGGG
CGGCATGCGGACGACGGGATGGTTAACGTGGTGAACAAGAGGTGCTCTCA
CCTGGGCTGCTCTACACAGCCGTCGTATGGGGTGGCGGGGACGAAAAAGG
CAGAATTCTGTGCGCGACATGCCGACGACGGGATGGTTAACGTGGTGATC
AAGAAGTGCTCCCACCAGAGTTGCTCTGCACGTGCGTCGTATGGAGTGGC
GGGGACGAAAAAGGCAGAGTTCTGTGGGCGGCATGCCGACGACGGGATGG
TGAACGTGGTAATGAAGAAGTGCTCCCACCGGGGCTGCTCTGCACAACCG
TCGTATGGAGTGGCGGGCACGAAAAAGGCAGAACTCTGTGCGCGGCATGC
CGACGACGGGATGGTTAACGTGGTGGACAAGAAGTGTTCCCACCGAGGCT
GCTCTACACAGCCGTCGTATGGAGTAGCGGGCACAAAAAAGGCAGAGTTC
TGTGCGCGGCACGCCGACGACGGGATGGTTAACGTGGTCATCAAGAAGTG
TTCCCACCAGGGTTGCTCTACACGTGCGTCGTATGGGGTGGCGGGGACGA
AAAAGGCAGAGCTCTGTGGGCGGCATGCCGACGACGGGATGGTTAACGTG
GTGAACAAGAAGTGTTCCCACCGGGGCTGCTCTACACGTGCGTCGTATGG
GGTGGCGGGGACGAAAAAGGCAGAGCTCTGTGCGCGGCATGCCGACGACG
TAATGGTTAACGTGGTGATCAAGAAGTGCTCCCACCAGAGTTGCTCTACA
CGTGCGTCGTATGGAGTGGTGGGGACGAAAAAGGCAGAGTTCTGTGGGCG
GCATGCCGACGACGGGATGGTTAACGTGGTGGACAAGAAGTATTCCCAAG
AGGTCTGCTCTGCACAACCGTCGTATGGGGTGGCGGGGACGAAAAAGGCA
GAGCTCTGTGCGGGGCATGCCGACGACGGGATGATTAACGTGGTGGACAA
GAAGTGTTCCCAAGAGGGTTGCTCTGCACAACCGTCTGGTCCCTTGCAGG
TTAAGCTTGAAATGGCTTCGGAGGACGTTGATGGTCATCGATGTTCCACA
ACTGTGGAGACAGGCAGAAAGCGCCACTCCGCACTAACTGTTCCGTCATA
CAGCGGTAGCTTTACCTCGCGCGAGTGTCGCAGCGTAAAACGGGCTCGCA
TTTCCTGTAGATCGAGCACCACAGAGCACCTAGCCCTCCGCACGCCTGCG
GCAGGCATGTCATCTCTCGACAATGGAGCTAATCTGAAGACGGAGGTGGC
TGCATCTGTTTTACAGTAGCACTGATTGCTGTTGGTCGTGGAGATATCGA
GTGTGAGGCGTGTGTCGAAACACGAGAGAGTGGTTGGCGATGATGCCGCC
ATTTTTAGTATTCAGAAATAGCAATAGACGTGGCTCGTGCAGGAGACTGT
ACAGCCCACATGAATTAGGCCGAGCAGGGAGAGCGGGAAGACTTGGAAGT
GTTCCCCCCCGACTCCAATGCCGTTCTTAGGGAGGGGGATTACTCATGTT
CGATGTAGCTTGCCGTCGAAGAGGGTGAGATGGAGCAGGGCAATGATGAG
GTGCTGGACCAAATCAACTGGTGAACTTCAAATCACTCCACCGCATCGTC
TGATGAGTCATCATCGACGATCGGCAGCAAGTCGATCAGCAACGATGATC
CATCTTCCGAGTCAGTAAGTAGTGAAGCTTGCAGCTTGCGTCGATGGCCT
CTTCGCGGGGTCATGGAGTGTTAGTGGTGTAGTAGTGGGCGTTGCATTTT
TGGCGCAAGCATTGAACGACACAAAAACCTTCTCCGTGTAAGTTTCGACC
AGCATCGGGTTGCTCGCAACATGAAGGAAGGGAATATTTGATGATTTCGC
GGGAGGGATTCGTGATGGCGACGTTGAGAGGACGACACCTTGATATTGCG
CATCTCTACAAACTGTGCGGAAAATTGATGAACGGGTTAATCGGTAAACT
GGGTAGAGATGTGCTCCTGACTGTGTGGAGTTGAAGGCAGCTTGTGAAAG
GCGGGCCGAAAGATAGAGTTTTGTATTATTACTGATGGGCTGTCCCCCGT
TGTTGCATAAAGAGTGGAAAAGGATAAGAGTTGGGAGCGTGGAGTGGAGT
GGATGAAGATGAAGTGATTGAGACTGGGGCCTGCACAAGACAGCACAGAA
CTTCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig7281:7148..10154+

>mRNA_H-paniculata_contig7281.15254.1 ID=mRNA_H-paniculata_contig7281.15254.1|Name=mRNA_H-paniculata_contig7281.15254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3642bp|location=Sequence derived from alignment at H-paniculata_contig7281:7148..10154+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTAACGTGGTGATCAAAAAGTGCTCCCACCAGGGTTGCTCTACACG
TGCGTCGTATGGAGTGGCGGGCACGAAAAAGGCAGAGTTCTGTGCGGGGC
ATGCCGATGACGGGATGGTTAACGTGGTGAACAAGAAGTGTTCCCACCGG
GGCTGCTCTGCACATGCGTCGTATGGAGTGGCGGGGACGAAAAAGGCGGA
GCTCTGTTCGCGGCATGCCGACGAAGGGATGGTTAACGTGGTGAACAAGA
AGTGTTCCCACCAGGGTTGCTCTACACAGCCGTCGTATGGGGTGGCTGGG
ACGAAAAAGGCAGAGTTCTGTGCGGGGCATGCCGGCGACGGGATGGTTAA
CGTGGTGGACAAGAAGTGTTCCCACCAGGGTTGCTCTACACAGCCGTCGT
ATGGAGTAGCGGGAACGAAAAAGGCAGAGTTCTGTGCGGGGCATGCCGGC
GACGGAATGATTAACGTGGTGAGCAAGAAGTGTTCCCACCAGGGCTGCTC
TACACTTCCGTCGTATGGAGTAGCGGGCACAAAAAAGGCAGAGTTCTGTG
GGCGGCATGCGGACGACGGGATGGTTAACGTGGTGAACAAGAGGTGCTCT
CACCTGGGCTGCTCTACACAGCCGTCGTATGGGGTGGCGGGGACGAAAAA
GGCAGAATTCTGTGCGCGACATGCCGACGACGGGATGGTTAACGTGGTGA
TCAAGAAGTGCTCCCACCAGAGTTGCTCTGCACGTGCGTCGTATGGAGTG
GCGGGGACGAAAAAGGCAGAGTTCTGTGGGCGGCATGCCGACGACGGGAT
GGTGAACGTGGTAATGAAGAAGTGCTCCCACCGGGGCTGCTCTGCACAAC
CGTCGTATGGAGTGGCGGGCACGAAAAAGGCAGAACTCTGTGCGCGGCAT
GCCGACGACGGGATGGTTAACGTGGTGGACAAGAAGTGTTCCCACCGAGG
CTGCTCTACACAGCCGTCGTATGGAGTAGCGGGCACAAAAAAGGCAGAGT
TCTGTGCGCGGCACGCCGACGACGGGATGGTTAACGTGGTCATCAAGAAG
TGTTCCCACCAGGGTTGCTCTACACGTGCGTCGTATGGGGTGGCGGGGAC
GAAAAAGGCAGAGCTCTGTGGGCGGCATGCCGACGACGGGATGGTTAACG
TGGTGAACAAGAAGTGTTCCCACCGGGGCTGCTCTACACGTGCGTCGTAT
GGGGTGGCGGGGACGAAAAAGGCAGAGCTCTGTGCGCGGCATGCCGACGA
CGTAATGGTTAACGTGGTGATCAAGAAGTGCTCCCACCAGAGTTGCTCTA
CACGTGCGTCGTATGGAGTGGTGGGGACGAAAAAGGCAGAGTTCTGTGGG
CGGCATGCCGACGACGGGATGGTTAACGTGGTGGACAAGAAGTATTCCCA
AGAGGTCTGCTCTGCACAACCGTCGTATGGGGTGGCGGGGACGAAAAAGG
CAGAGCTCTGTGCGGGGCATGCCGACGACGGGATGATTAACGTGGTGGAC
AAGAAGTGTTCCCAAGAGGGTTGCTCTGCACAACCGTCTGGTCCCTTGCA
GGTTAAGCTTGAAATGGCTTCGGAGGACGTTGATGGTCATCGATGTTCCA
CAACTGTGGAGACAGGCAGAAAGCGCCACTCCGCACTAACTGTTCCGTCA
TACAGCGGTAGCTTTACCTCGCGCGAGTGTCGCAGCGTAAAACGGGCTCG
CATTTCCTGTAGATCGAGCACCACAGAGCACCTAGCCCTCCGCACGCCTG
CGGCAGGCATGTCATCTCTCGACAATGGAGCTAATCTGAAGACGGAGGTG
GCTGCATCTGTTTTACAGTAGATGGTTAACGTGGTGATCAAAAAGTGCTC
CCACCAGGGTTGCTCTACACGTGCGTCGTATGGAGTGGCGGGCACGAAAA
AGGCAGAGTTCTGTGCGGGGCATGCCGATGACGGGATGGTTAACGTGGTG
AACAAGAAGTGTTCCCACCGGGGCTGCTCTGCACATGCGTCGTATGGAGT
GGCGGGGACGAAAAAGGCGGAGCTCTGTTCGCGGCATGCCGACGAAGGGA
TGGTTAACGTGGTGAACAAGAAGTGTTCCCACCAGGGTTGCTCTACACAG
CCGTCGTATGGGGTGGCTGGGACGAAAAAGGCAGAGTTCTGTGCGGGGCA
TGCCGGCGACGGGATGGTTAACGTGGTGGACAAGAAGTGTTCCCACCAGG
GTTGCTCTACACAGCCGTCGTATGGAGTAGCGGGAACGAAAAAGGCAGAG
TTCTGTGCGGGGCATGCCGGCGACGGAATGATTAACGTGGTGAGCAAGAA
GTGTTCCCACCAGGGCTGCTCTACACTTCCGTCGTATGGAGTAGCGGGCA
CAAAAAAGGCAGAGTTCTGTGGGCGGCATGCGGACGACGGGATGGTTAAC
GTGGTGAACAAGAGGTGCTCTCACCTGGGCTGCTCTACACAGCCGTCGTA
TGGGGTGGCGGGGACGAAAAAGGCAGAATTCTGTGCGCGACATGCCGACG
ACGGGATGGTTAACGTGGTGATCAAGAAGTGCTCCCACCAGAGTTGCTCT
GCACGTGCGTCGTATGGAGTGGCGGGGACGAAAAAGGCAGAGTTCTGTGG
GCGGCATGCCGACGACGGGATGGTGAACGTGGTAATGAAGAAGTGCTCCC
ACCGGGGCTGCTCTGCACAACCGTCGTATGGAGTGGCGGGCACGAAAAAG
GCAGAACTCTGTGCGCGGCATGCCGACGACGGGATGGTTAACGTGGTGGA
CAAGAAGTGTTCCCACCGAGGCTGCTCTACACAGCCGTCGTATGGAGTAG
CGGGCACAAAAAAGGCAGAGTTCTGTGCGCGGCACGCCGACGACGGGATG
GTTAACGTGGTCATCAAGAAGTGTTCCCACCAGGGTTGCTCTACACGTGC
GTCGTATGGGGTGGCGGGGACGAAAAAGGCAGAGCTCTGTGGGCGGCATG
CCGACGACGGGATGGTTAACGTGGTGAACAAGAAGTGTTCCCACCGGGGC
TGCTCTACACGTGCGTCGTATGGGGTGGCGGGGACGAAAAAGGCAGAGCT
CTGTGCGCGGCATGCCGACGACGTAATGGTTAACGTGGTGATCAAGAAGT
GCTCCCACCAGAGTTGCTCTACACGTGCGTCGTATGGAGTGGTGGGGACG
AAAAAGGCAGAGTTCTGTGGGCGGCATGCCGACGACGGGATGGTTAACGT
GGTGGACAAGAAGTATTCCCAAGAGGTCTGCTCTGCACAACCGTCGTATG
GGGTGGCGGGGACGAAAAAGGCAGAGCTCTGTGCGGGGCATGCCGACGAC
GGGATGATTAACGTGGTGGACAAGAAGTGTTCCCAAGAGGGTTGCTCTGC
ACAACCGTCTGGTCCCTTGCAGGTTAAGCTTGAAATGGCTTCGGAGGACG
TTGATGGTCATCGATGTTCCACAACTGTGGAGACAGGCAGAAAGCGCCAC
TCCGCACTAACTGTTCCGTCATACAGCGGTAGCTTTACCTCGCGCGAGTG
TCGCAGCGTAAAACGGGCTCGCATTTCCTGTAGATCGAGCACCACAGAGC
ACCTAGCCCTCCGCACGCCTGCGGCAGGCATGTCATCTCTCGACAATGGA
GCTAATCTGAAGACGGAGGTGGCTGCATCTGTTTTACAGTAG
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