mRNA_H-paniculata_contig728.15251.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig728.15251.1
Unique NamemRNA_H-paniculata_contig728.15251.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig728.15251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig728contigH-paniculata_contig728:14626..20397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size818
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig728.15251.1prot_H-paniculata_contig728.15251.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig728 14626..20095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.3838477-CDS-H-paniculata_contig728:14625..148111622930887.3838477-CDS-H-paniculata_contig728:14625..14811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig728 14626..14811 -
1691481497.0725937-CDS-H-paniculata_contig728:14625..148111691481497.0725937-CDS-H-paniculata_contig728:14625..14811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig728 14626..14811 -
1622930887.4118452-CDS-H-paniculata_contig728:16231..164331622930887.4118452-CDS-H-paniculata_contig728:16231..16433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig728 16232..16433 -
1691481497.081317-CDS-H-paniculata_contig728:16231..164331691481497.081317-CDS-H-paniculata_contig728:16231..16433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig728 16232..16433 -
1622930887.427957-CDS-H-paniculata_contig728:19967..200951622930887.427957-CDS-H-paniculata_contig728:19967..20095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig728 19968..20095 -
1691481497.0918567-CDS-H-paniculata_contig728:19967..200951691481497.0918567-CDS-H-paniculata_contig728:19967..20095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig728 19968..20095 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.4466453-UTR-H-paniculata_contig728:20095..203971622930887.4466453-UTR-H-paniculata_contig728:20095..20397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig728 20096..20397 -
1691481497.100308-UTR-H-paniculata_contig728:20095..203971691481497.100308-UTR-H-paniculata_contig728:20095..20397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig728 20096..20397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig728.15251.1

>prot_H-paniculata_contig728.15251.1 ID=prot_H-paniculata_contig728.15251.1|Name=mRNA_H-paniculata_contig728.15251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp
MNTKRGREPLVHLSEINGPSTSTTEAMVAANKRGRQQPPDGSSSTDAREQ
ERGPFRSLLAVGGVAWARNTSGAAAASRSGYSCRCNPAKLRLFVQKALAH
DHDKRADFLEGMREFMSGPVQFLQRALLPLDYSNDHWAARGGQGRPSIVA
AAAAAAAAANASGSSGGGAGGG
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mRNA from alignment at H-paniculata_contig728:14626..20397-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig728.15251.1 ID=mRNA_H-paniculata_contig728.15251.1|Name=mRNA_H-paniculata_contig728.15251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5772bp|location=Sequence derived from alignment at H-paniculata_contig728:14626..20397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGTACTGTTTCGACCAGTGTTTATTGGACACTCCTGCGACTGTGCTGT
TTGAGGCAGGAGGTACATGCTGCTGCGCCTATCGGGAGATACTAGCTGTT
GAAGCCACCTCTGGTACTCTCTTCCCGCAAGGAAGAGTAGTTCGCAAGAA
AGCAGCTTTGAGCAGTCCAGCTTTTTCCAACACCATCACGTCAAACTGGA
TCAAATTCAAATTTCGAGACGCAAATTCGCGGCAAAGCCGCCAAGCTGCG
GCAAGTTGTGAGAACAGACAGTGAGTGCTCAGGTGACTACACATCATAGC
ACATGAATACGAAGCGTGGGCGTGAACCTCTCGTGCATCTCAGTGAAATC
AATGGGCCCTCTACATCCACGACAGAAGCGATGGTGGCAGCCAACAAGCG
CGGGAGGCAGCAGCCTCCTGATGGATCCAGGTTCGTTGGTTGGTTTAGTA
CCTAGTATCTCTCAGCAGGACGTGCGGGCACGTCGTGTACTTACTTCACT
GTCCTGGATGTACTAAATTGTCTGTACTGAACTGTCTGAACCGCACGCTA
TGCAGTGTATGCAGTGTGTACATGATAGATAAAATTGTACAAGTACACTT
TTGCACTCTTTTTACTCGATGTAATACTATGCTCTTTGTTTGCATGTACT
GTTATGAGTATACCCTAGGCTATACAGTACAGTCATATACTAGTCAAAAA
GTTGAGATAAAATGAGACTGTTTCACATGGCGACCATTAATGGACCATTA
CACCTGGTGTATTTTCTAGATTATGACCATGTTAGGAACCGGTTCGCGTA
GAGGTCCGGTTCGCGGTCGGCCATGTGAGAAATTGCCGGTTGTGTCGGTC
GTGCGAAATTCATGCTCTGTTAGTTCTCAAACTCGGTGTTATCGAGAACG
AAGGAAATTCCTGCTGAGAGCCTACTTTCATTTCAAATGTCACCTTTTTC
AATCTCACGAGCAAAGCTGTGTAAAGTAGTATACAACTGGTATCTTGGTG
GATCATTTTTGCACCAAAACGATGTAACAGTAGCATGTTTGCGAAGCGAA
CCTTGTTTCTCTAAAACCTACTGAACTGCTTCCGCGTGACCGACGACACC
ACGCGAATTAGCAGAAACTGTTATCTTTTGTCCTTCAAATCGAAAAGTTA
ATCCCAATTTTTAGTACTTTTTGTTGAAATAACGACCATAGTTGACCTGA
GCTAGTGGTTGGTTAGGATGTCCAGACATCCTTGTGGTTGGCCAATATGC
CCCGTACCAATCGGCCATGTAAAAATGGCGCAGTGCAAATTGGCAGTTGG
GATGAATCACACCCAAGATTTTGTCCATGCAACAAGTGTTTGACTCCATA
CACTTGAAGAGGTAGAGTTCGCCGAAAACGGGAATTATGAGCTCTCTCCA
ACAGCTTTGATCTTCTTGGTGACAACACCACATTCGTTGTGTTTGGGATT
CATCGCGGCGCTGCTGATTGTGACCAAGCTATGACTGACGTTGGTCCTGC
CTATTGTCCAGCCTCACGTAGCTTGCTGCTGTACTCAAAGCTATGGAGAG
TATACAACAGACAGTCGGTCCAGGCCACTTTTTTCAATTGCAACTTCTTG
TGGAGTTGCACCCCACGGACAATTGCGTATAGGTACAGGCAAACGCGACA
AAGCCAAATGATGACGAGTTTCTCAAATAGATAGAGTCGTTACAGCAATC
CTGACCTTGGTCACAACATCATGGTAATCGGCAAGTTCTCGCAACGTGCT
GGTGGATGTGGTTAGATTGCATTTTCTCTCAAGACCAGCCGAGGACCCAG
TTACACATTACAGATTGCTGAACTTCAACGCACAGCGCACTCTATATCCT
AACGAGACATATTCCTCCGATAACTAGTTGTTCATAGGGATAAGTCCGTG
CAAGCACCCCTACTTTCCACCCCAACCCTACCGTGGTTGTGAGATTTTAA
CACAGTACAGACAGTAGTGTACCATGCCTGCGCTTCGGTCACAGTTTCCC
TCGTTGACCCTATTGTCCACCAATAAGGTCCCTTCAAAAGCAACAAAACA
TTTACACTATGTATTTCCCAAACTGAAAAGAGGCTCATGGATGGACGGAT
GTTTTTATTCAAAACACCTGAATTTCGCTAACACTCGAATATTCCAAAAA
GAAAGTTGAGTTTGAAAAAAATTAAGATTGTTCACCTGGTAACCGAGCAT
GACGGCGTGGCACATATATTTTTTTTAACATGACCATGTTTCGCGGAACA
GAGGCTGAATGGCTCGAGTAGCCCGTGTACTGGGCAAGCTGGGAGACACG
TTTACAGTTTAAGTGGGTGTGAGCCCCACATGACCTGCTCGCCTGATCGT
GGGAGTGTTGGTATATATCTACCCAACTCCGATGTCCCAGGTAGTAGCGC
AGGTGAAAGTGCGTAAAATAAGCTGTGTGTCGATCAGAGTTGGGCCGAGT
TAGGTTATATGCACCGCTACTAAAAAAATACAGTATTACCTCTGATATCG
CACCCCTTTGACATATTTTTCCAAACTCGAGTTTATCGAGAAGCAAGAGC
CTGCACTGCCGAAACAGCAGCTGTATCGAAATATCTTCACGAAATGTTTC
CAACGATACCTTGACGATACCGCTATTTTTCGGTGTCATGAGCACCGTCC
TTGCCTACAAAATCGAGTTTGAAAAATAATTCAAGGGGTGAGATATCAAG
GAGTGCTACGGTAACGTGGGCTCCCGCTCAAGTGCGGTAAGGTTCGGCTC
GCACATCACTGTACCTAACTCACACCCCATCGCCACCTACATATAGACCA
CGACTACTGCTGTACACCAGTGACGAACGCAATGGAGGCTCCACCAGCAT
CACCACATTACCCTACGAAGTAATGATACTATCACGGAGCTACACTCTTT
AGTAGGACCCAATTGTTACTATTTCACCCGATTTGCCTCCAATGCAATTC
GGTGTATCTCCATAATCACGGGGTTAAATCGAAAACCTAAACGTGGGTGC
ATACCGCACGATTGAGACCGCTCCACACGTAGCGGTTCCTGCATGTTGTT
TCGGTCGAACGAGTTCAGACTTTCGTCGTTTCCGGTAGAACAACGTTTCG
GTCCTACTAACAATGTGCCTCAGCAATAGGGTGTTTGCGCAAAACGAGTT
CCTTTTTCCGAATTTTCAATTTGGCCGTCTAAAGCGAGCAGTGAGCTCAT
TGTCCCGGAGCCCAGTCCACCTACATCAACATTTCTTTACGAAAGGCTTT
CCTTTCCAAAATTCGTTTGTGCCGTAAGAGATACAAGTAGTCGCTGTTCG
TGACAAGGAAATCGATTCGTGAGGAAACGTTTGATGTAGGTGGACTGGGC
TCGGGGACAAGGAGCTCACTGTTTGCCTTACACAGCCAACTTGAAATTTG
CAAAAGGAGTTTCATTTTTGCGCAAACACTCTAATAGCAATCCTCATTAT
CTAGTACCGTGATGATGATTGATGATGGTGACGCTCCTCTCGAGATAGTT
TCCATTCTCTATTCCAGTTTTTTTTTTTTCAAAAGTGTCCCTGAACCGCT
ACTATTAGCGCAGCTGCTGTGGCCTGCCTACTGCAGTACAGTAAAATGCC
CTTGTTGTGATAGGTGTTCGTTTGGTTGGCTATTGCTTGTGTGGTTGGGG
TGGGTTGGGTTGGGAATTTTTCATTTTGCAACAATGATTAGGTAAGACAC
GCCATAGCGTTTCTTAGAAAAGGTGTAGAGTCCTCTTATCCACCGCATCG
GACAATACGCGCTCCTCCAAACCAGCTCACGAAAAACACTCGTGGGTTAA
ATATTTATACATGTATTTGTATACTCCAAATTGTCGCGACCCAGACAGCC
AGCATCAATCATCACCTTACCTGAAATACAGCAACATATATTGTAGTATA
ATGTTTTTTCAACGCGGGTGTGAACCCTATCCACCTTCTCACTGACATGC
GCTGCCTCGACCAGCTCGACAGACGCTCGAGAGCAAGAGCGCGGACCGTT
TCGATCTCTCTTAGCTGTGGGCGGGGTCGCCTGGGCAAGAAACACGAGCG
GGGCAGCGGCGGCGAGCAGATCCGGATATTCGTGCCGGTGCAATCCGGCA
AAGCTGAGGCTGTTCGTGCAGAAGGCTCTGGCGCATGACCATGACAAACG
AGCAGATTTTCTCGAGGTGTAGTCGATATTTTTGTTGCAACGGATGTATA
TCCGATGGCCAGTTGAGCCCCATCGTGTCTCGATGTCCACCTGCTCAGAA
GGACCGTGCTAAACGAGCGAGCCTGTTTTCCCGCTTTTCGAGAGAGAGAG
AGAAGTTACTTTATGTATGGCAAGAACCCCATTCAAAAATCCGGTTTCCG
ATTTTTTTTTCCGATTTTTTTTTTCATGTACGGCAAAACATCATTCGGGA
ATAGTAATAATTTGTTTCGAAATGCAGTAGTTGTAGAGTTCAAATTTTCG
AACAAAAATCGGAAAACGGAAAAATCAGGCTCGCTCGTTGGCGTGGTCCT
ATGCTAACTATGTTCCCAGTCGGTCACTACTATGTTCCAAGGGCGGTTAT
GCCCAATTTTTTCGTAGTACTCGAGAAGTCTTCGATCCTCGAGACCCCGA
GCACAACGGACGGGGAAAAGTAACCATCTAACATATTTCGGCTCTGCAGT
ACTATACCATGGCATCGATTGCACACCAAAAACACGTGGTCTAACGAATG
CGTGGATTCCTTTTTTTTAAGTATCAAAAACGTCCGTTGGGGGCAGAGTA
AGGTCGTGTCATCCACTTTGGGTCGTACAGCCTTTTTTTCTGTTGAACAC
ATTCCGCGATTTACACCATTCACAGGATTTACGCCCTCCAGGTAGAGAAC
CCCAAAACCTCGATCCGAGATGTTTACGCGCAGTACTGTGGCGCTACTCG
CTATTGCACACGGAGGTAAATGCCAATACCTAATGGTCCAAGAGCTGAGG
CGCGCATGCCTTCAGGACCACGCCTCAATCCCCGCCCCCTCCCCGACTGC
GTCTTCTCCGCGAAGCATGGTCAATGGTCTGACGACTGCGGTATGCAAAG
TATCAGTTTATCTTCTTTTGACTTGATATCGACGTTGCTCACGAGTATAT
ATAGTGATGACCCATGATTATTAGCCACATATCCTCAGCATGAAGTACGC
CCACCCCTTCCCTTCCCCCCCCGCATAATTGGAAGGTGTGATAGAGAGGC
CTTTAAATCCTGGGATCGCAATAAGAAGGCGATACGTAACGGTTCTAGGA
GATGGGATATTATCCTGAAAAAATCAGCGCTGAGGTGGATAGGATTCGTG
AAATAATTTTTGAGGCACATTTGACAAATTAGAAAAGAGCAATTAGTCAT
CCAAGATCGCTGTGACAAGAACAAAGCTCCGTCTTCTCGAGGACGCGCGG
TCAATGGTGTAACAACTACGGCATGCGAGACATGAGTACGCCCCTCCTTC
TATTTCCCTCTATCTTGAAGTAATTTTGCTGATACGTCCCCCAAATCAAT
CTCCAACCCCCACTGCTCCTCCCAACTCCCCACCCCTACCTCAATCTCCA
CCCCCATTGCCACCTCGTCAAAAACTCGGATGGCAGGGTATGCGAGAGTT
CATGTCCGGGCCAGTCCAGTTCCTCCAACGGGCGTTGCTGCCCCTCGACT
ACAGCAACGACCACTGGGCTGCTCGAGGTGGACAAGGAAGGCCGTCTATT
GTGGCGGCAGCGGCGGCAGCGGCTGCGGCAGCTAATGCATCGGGTTCATC
TGGCGGTGGCGCCGGCGGAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig728:14626..20397-

>mRNA_H-paniculata_contig728.15251.1 ID=mRNA_H-paniculata_contig728.15251.1|Name=mRNA_H-paniculata_contig728.15251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig728:14626..20397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATACGAAGCGTGGGCGTGAACCTCTCGTGCATCTCAGTGAAATCAA
TGGGCCCTCTACATCCACGACAGAAGCGATGGTGGCAGCCAACAAGCGCG
GGAGGCAGCAGCCTCCTGATGGATCCAGATGAATACGAAGCGTGGGCGTG
AACCTCTCGTGCATCTCAGTGAAATCAATGGGCCCTCTACATCCACGACA
GAAGCGATGGTGGCAGCCAACAAGCGCGGGAGGCAGCAGCCTCCTGATGG
ATCCAGCTCGACAGACGCTCGAGAGCAAGAGCGCGGACCGTTTCGATCTC
TCTTAGCTGTGGGCGGGGTCGCCTGGGCAAGAAACACGAGCGGGGCAGCG
GCGGCGAGCAGATCCGGATATTCGTGCCGGTGCAATCCGGCAAAGCTGAG
GCTGTTCGTGCAGAAGGCTCTGGCGCATGACCATGACAAACGAGCAGATT
TTCTCGAGCTCGACAGACGCTCGAGAGCAAGAGCGCGGACCGTTTCGATC
TCTCTTAGCTGTGGGCGGGGTCGCCTGGGCAAGAAACACGAGCGGGGCAG
CGGCGGCGAGCAGATCCGGATATTCGTGCCGGTGCAATCCGGCAAAGCTG
AGGCTGTTCGTGCAGAAGGCTCTGGCGCATGACCATGACAAACGAGCAGA
TTTTCTCGAGGGTATGCGAGAGTTCATGTCCGGGCCAGTCCAGTTCCTCC
AACGGGCGTTGCTGCCCCTCGACTACAGCAACGACCACTGGGCTGCTCGA
GGTGGACAAGGAAGGCCGTCTATTGTGGCGGCAGCGGCGGCAGCGGCTGC
GGCAGCTAATGCATCGGGTTCATCTGGCGGTGGCGCCGGCGGAGGAGGTA
TGCGAGAGTTCATGTCCGGGCCAGTCCAGTTCCTCCAACGGGCGTTGCTG
CCCCTCGACTACAGCAACGACCACTGGGCTGCTCGAGGTGGACAAGGAAG
GCCGTCTATTGTGGCGGCAGCGGCGGCAGCGGCTGCGGCAGCTAATGCAT
CGGGTTCATCTGGCGGTGGCGCCGGCGGAGGA
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