mRNA_H-paniculata_contig72747.15247.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig72747.15247.1
Unique NamemRNA_H-paniculata_contig72747.15247.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: D7FI31_ECTSI (Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI31_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.430e-14
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQ 144
            +  +GLKGAIIYYDGQMND+RLSLVVALTATQ+GA IAN VKVT  V+
Sbjct:   62 LREKGLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVK 109
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: A0A7S3XZ35_HETAK (Glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ35_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 3.750e-13
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQPMDQAGKCD 171
            ++ +GLKGAI+YYDGQMND+R++LVVALTA QEGA++AN V +   ++  D  G+C+
Sbjct:  177 LKAEGLKGAIVYYDGQMNDTRMNLVVALTADQEGAAVANRVALVSLLKGAD--GRCE 231
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: A0A2J7Q7M7_9NEOP (Glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7Q7M7_9NEOP)

HSP 1 Score: 71.2 bits (173), Expect = 5.160e-13
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQPMDQAGK 165
            ++G  L GAI+YYDGQM+D+R+ L VALTAT+ GA++ANHV+VT+ ++  D +GK
Sbjct:  204 LQGDKLCGAIVYYDGQMDDARMCLSVALTATRHGATVANHVRVTKLLKEKDSSGK 258
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: UPI001F4FFC8E (glycerol-3-phosphate dehydrogenase, mitochondrial n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F4FFC8E)

HSP 1 Score: 70.5 bits (171), Expect = 1.090e-12
Identity = 29/55 (52.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQPMDQAGK 165
            ++G  L+GAI+YYDGQ +D+R++L +ALTAT+ GA++ANHV+VT  ++  D+ GK
Sbjct:  200 LQGDKLRGAIVYYDGQQDDARMNLAIALTATRHGATVANHVRVTSLLKDKDKDGK 254
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: A0A067RNM6_ZOONE (Glycerol-3-phosphate dehydrogenase n=3 Tax=Termitoidae TaxID=1912919 RepID=A0A067RNM6_ZOONE)

HSP 1 Score: 70.5 bits (171), Expect = 1.090e-12
Identity = 30/55 (54.55%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQPMDQAGK 165
            ++G  L GAI+YYDGQM+D+R+ L VALTAT+ GA++ANH++VT+ ++  D +GK
Sbjct:  202 LQGDKLCGAIVYYDGQMDDARMCLSVALTATRHGATVANHIRVTKLLKEKDPSGK 256
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: A0A4D9CPV7_9STRA (Glycerol-3-phosphate dehydrogenase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPV7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.770e-12
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQ 144
            + G+GLKGAIIYYDGQMND+R+ L +ALTA QEGA+IAN V+V   ++
Sbjct:  237 LRGKGLKGAIIYYDGQMNDTRMGLTIALTAAQEGAAIANRVEVVSLLK 284
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: UPI0008F9C595 (glycerol-3-phosphate dehydrogenase, mitochondrial n=2 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C595)

HSP 1 Score: 69.3 bits (168), Expect = 2.770e-12
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQPMDQAGKC 168
            + G  LKGAI+YYDGQ +D+R+ L +ALTAT+ GA++ANHVKVT  ++  D+ G C
Sbjct:  204 LRGDALKGAIVYYDGQQDDARMCLAIALTATRHGATVANHVKVTGLLK--DEKGHC 257
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: A0A6U0U5L7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0U5L7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.950e-12
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQPMD 153
            ++  GLKGA++YYDGQMND+R+SL +ALTA Q GA++AN V+V  + +  D
Sbjct:  215 LKADGLKGAVVYYDGQMNDTRMSLTIALTAAQSGAAVANRVRVLEFTKSED 265
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: M4C1M0_HYAAE (Glycerol-3-phosphate dehydrogenase n=25 Tax=Peronosporaceae TaxID=4777 RepID=M4C1M0_HYAAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.160e-12
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQPMDQAGK 165
            +   GLKGAI+YYDGQMND+R+++ +ALTATQ GA++AN+VKV + ++  D+ GK
Sbjct:  211 LRKDGLKGAIVYYDGQMNDTRMNVSIALTATQNGATVANYVKVVQLLK--DEEGK 263
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BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Match: A0A8K0CAC8_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CAC8_9COLE)

HSP 1 Score: 68.6 bits (166), Expect = 5.180e-12
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQPMDQAGK 165
            + G  L GAI+YYDGQ +D+R++L +ALTAT+ GA++ANHV VT  ++  ++AGK
Sbjct:  204 LRGDKLVGAIVYYDGQQDDARMNLAIALTATRHGATVANHVSVTELLKEKNEAGK 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72747.15247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI31_ECTSI3.430e-1477.08Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocar... [more]
A0A7S3XZ35_HETAK3.750e-1356.14Glycerol-3-phosphate dehydrogenase (Fragment) n=1 ... [more]
A0A2J7Q7M7_9NEOP5.160e-1356.36Glycerol-3-phosphate dehydrogenase (Fragment) n=1 ... [more]
UPI001F4FFC8E1.090e-1252.73glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
A0A067RNM6_ZOONE1.090e-1254.55Glycerol-3-phosphate dehydrogenase n=3 Tax=Termito... [more]
A0A4D9CPV7_9STRA2.770e-1264.58Glycerol-3-phosphate dehydrogenase n=3 Tax=Monodop... [more]
UPI0008F9C5952.770e-1255.36glycerol-3-phosphate dehydrogenase, mitochondrial ... [more]
A0A6U0U5L7_9STRA4.950e-1254.90Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
M4C1M0_HYAAE5.160e-1256.36Glycerol-3-phosphate dehydrogenase n=25 Tax=Perono... [more]
A0A8K0CAC8_9COLE5.180e-1252.73Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72747contigH-paniculata_contig72747:381..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score70.5
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog136037.KDR21344
KEGG rclassRC00029
KEGG koko:K00111
KEGG ReactionR00848
KEGG Pathwayko00564,ko01110,map00564,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004368,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0006066,GO:0006071,GO:0006072,GO:0006091,GO:0006116,GO:0006127,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007610,GO:0007626,GO:0007629,GO:0008150,GO:0008152,GO:0008344,GO:0009117,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016614,GO:0016901,GO:0019362,GO:0019400,GO:0019637,GO:0019674,GO:0019751,GO:0019866,GO:0022900,GO:0022904,GO:0030534,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0034308,GO:0034641,GO:0042180,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0051186,GO:0052646,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901615
EggNOG free text desc.Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
EggNOG OGs38FKM@33154,3BB5T@33208,3CRJI@33213,3SGQY@50557,41UTV@6656,COG0578@1,KOG0042@2759
EC1.1.5.3
COG Functional cat.C
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930886.8037972-CDS-H-paniculata_contig72747:380..5661622930886.8037972-CDS-H-paniculata_contig72747:380..566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72747 381..566 -
1691481496.811586-CDS-H-paniculata_contig72747:380..5661691481496.811586-CDS-H-paniculata_contig72747:380..566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72747 381..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72747.15247.1prot_H-paniculata_contig72747.15247.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig72747 381..566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig72747.15247.1

>prot_H-paniculata_contig72747.15247.1 ID=prot_H-paniculata_contig72747.15247.1|Name=mRNA_H-paniculata_contig72747.15247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
IEGQGLKGAIIYYDGQMNDSRLSLVVALTATQEGASIANHVKVTRYVQPM
DQAGKCDERVA*
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mRNA from alignment at H-paniculata_contig72747:381..566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig72747.15247.1 ID=mRNA_H-paniculata_contig72747.15247.1|Name=mRNA_H-paniculata_contig72747.15247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig72747:381..566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAAGGACAGGGGTTAAAGGGAGCGATTATTTACTACGATGGGCAAAT
GAACGACTCGCGCTTGAGCCTGGTGGTTGCCCTTACTGCCACACAAGAGG
GAGCCTCCATAGCCAACCACGTCAAGGTCACGAGGTACGTGCAGCCGATG
GATCAAGCGGGGAAATGCGACGAGCGGGTGGCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig72747:381..566-

>mRNA_H-paniculata_contig72747.15247.1 ID=mRNA_H-paniculata_contig72747.15247.1|Name=mRNA_H-paniculata_contig72747.15247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig72747:381..566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAAGGACAGGGGTTAAAGGGAGCGATTATTTACTACGATGGGCAAAT
GAACGACTCGCGCTTGAGCCTGGTGGTTGCCCTTACTGCCACACAAGAGG
GAGCCTCCATAGCCAACCACGTCAAGGTCACGAGGTACGTGCAGCCGATG
GATCAAGCGGGGAAATGCGACGAGCGGGTGGCATAGATCGAAGGACAGGG
GTTAAAGGGAGCGATTATTTACTACGATGGGCAAATGAACGACTCGCGCT
TGAGCCTGGTGGTTGCCCTTACTGCCACACAAGAGGGAGCCTCCATAGCC
AACCACGTCAAGGTCACGAGGTACGTGCAGCCGATGGATCAAGCGGGGAA
ATGCGACGAGCGGGTGGCATAG
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