mRNA_H-paniculata_contig72702.15243.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig72702.15243.1
Unique NamemRNA_H-paniculata_contig72702.15243.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: A0A671Y6X3_SPAAU (E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671Y6X3_SPAAU)

HSP 1 Score: 76.6 bits (187), Expect = 1.410e-15
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    4 VFITRPGTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLP 204
            VF    GTQP+G M+ +     +  L G+  YGTIVI YYFP G Q  RHP+PG+RY+GTSRTAYLP
Sbjct:   58 VFGVIEGTQPDGKMSVQK---SYLSLPGFEGYGTIVISYYFPDGKQTERHPNPGQRYHGTSRTAYLP 121
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: A0A7J6BHN0_AMEME (E3 ubiquitin-protein ligase n=1 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6BHN0_AMEME)

HSP 1 Score: 78.2 bits (191), Expect = 3.940e-15
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    4 VFITRPGTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLPVSFLSN 222
            +F    G QPEGTM  + Y   H  L G+P  GTI+I Y+ P+GIQ   HP+PGK YYGT RTAYLP +   N
Sbjct:  513 IFGILKGNQPEGTMEVQHYK--HTDLPGFPRCGTIIISYHIPNGIQKSEHPNPGKPYYGTQRTAYLPDNAEGN 583
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: UPI0001CBB977 (uncharacterized protein LOC100368311 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBB977)

HSP 1 Score: 77.4 bits (189), Expect = 7.490e-15
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 MVFITRPGTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLPVS 210
            +++ T  G+QP+GTMNT T    H  L GY  YGTIVI+Y FP GIQ  +HP+PGK Y GT R AYLP S
Sbjct: 1145 LIYGTLTGSQPDGTMNT-TVDKLHS-LPGYTGYGTIVIVYEFPDGIQTEKHPNPGKAYQGTKRRAYLPDS 1212
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: A0A6B2L5W1_9EUKA (RING-type E3 ubiquitin transferase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5W1_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 1.060e-14
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   22 GTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLP 204
            G  P G +     P G++ ++GY ++GTI++ ++FP GIQGP HP+PG +Y+GT+R AYLP
Sbjct:  241 GNMPPGELKIEKLPPGNQSISGYESFGTIIVKFHFPDGIQGPEHPNPGNKYFGTTRIAYLP 301
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: UPI0011C0D1F1 (E3 ubiquitin-protein ligase DTX3L-like isoform X1 n=3 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D1F1)

HSP 1 Score: 76.6 bits (187), Expect = 1.380e-14
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    4 VFITRPGTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLP 204
            VF    GTQP+G M+ +     +  L G+  YGTIVI YYFP G Q  RHP+PG+RY+GTSRTAYLP
Sbjct:  691 VFGVIEGTQPDGKMSVQK---SYLSLPGFEGYGTIVISYYFPDGKQTERHPNPGQRYHGTSRTAYLP 754
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: M7BKE8_CHEMY (E3 ubiquitin-protein ligase n=2 Tax=Chelonia mydas TaxID=8469 RepID=M7BKE8_CHEMY)

HSP 1 Score: 76.3 bits (186), Expect = 1.880e-14
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   22 GTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLP 204
            G QPEGTM+    P    P+ GYP  GTI I YY P G+Q   HP+PG+RY+GTSRTAYLP
Sbjct:  570 GNQPEGTMSFSKLPY---PVTGYPQCGTIKIDYYMPDGVQTKNHPNPGRRYFGTSRTAYLP 627
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: A0A1L8FBI0_XENLA (E3 ubiquitin-protein ligase n=2 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8FBI0_XENLA)

HSP 1 Score: 72.4 bits (176), Expect = 8.780e-14
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   22 GTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLPVSFLSN 222
            G QP+G M     P  H P  GY  YGTIVI Y FP GIQGP HP+PG RY GT+R A+LP S   N
Sbjct:   83 GNQPDGKMEIFRDPSLHLP--GYEKYGTIVIRYTFPAGIQGPNHPNPGVRYPGTTREAFLPDSNKGN 147
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: H3A180_LATCH (E3 ubiquitin-protein ligase n=3 Tax=Latimeria chalumnae TaxID=7897 RepID=H3A180_LATCH)

HSP 1 Score: 73.6 bits (179), Expect = 1.310e-13
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   22 GTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLPVS 210
            GTQP+G   T T+    K L GY  YGTI+I Y  P GIQGP HP  G++YYGT R AYLP S
Sbjct:  233 GTQPKG--GTMTFSRSTKSLPGYENYGTIIITYVIPDGIQGPEHPHSGQKYYGTRRKAYLPDS 293
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: A0A6P8FTV4_CLUHA (E3 ubiquitin-protein ligase n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8FTV4_CLUHA)

HSP 1 Score: 73.2 bits (178), Expect = 2.010e-13
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   22 GTQPE-GTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLPVS 210
            GTQPE GTM        H P  GY  YGTIVI YY P GIQG  HP+PG+RY G +RTAYLP S
Sbjct:  267 GTQPEKGTMKVTYEDKSHLP--GYEKYGTIVIEYYIPSGIQGEAHPNPGQRYEGAARTAYLPNS 328
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BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Match: UPI0014900143 (E3 ubiquitin-protein ligase DTX3L n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI0014900143)

HSP 1 Score: 73.2 bits (178), Expect = 2.100e-13
Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   22 GTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPRHPSPGKRYYGTSRTAYLPVS 210
            GTQPEG   T  Y      L GY  YGTI I YY P GIQ   HPSPG+RY G SRTAYLP S
Sbjct:  292 GTQPEG--GTMKYTKDSLSLPGYKKYGTITIQYYIPSGIQKEEHPSPGQRYEGASRTAYLPSS 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72702.15243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A671Y6X3_SPAAU1.410e-1556.72E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata ... [more]
A0A7J6BHN0_AMEME3.940e-1552.05E3 ubiquitin-protein ligase n=1 Tax=Ameiurus melas... [more]
UPI0001CBB9777.490e-1557.14uncharacterized protein LOC100368311 n=1 Tax=Sacco... [more]
A0A6B2L5W1_9EUKA1.060e-1447.54RING-type E3 ubiquitin transferase n=1 Tax=Arcella... [more]
UPI0011C0D1F11.380e-1456.72E3 ubiquitin-protein ligase DTX3L-like isoform X1 ... [more]
M7BKE8_CHEMY1.880e-1459.02E3 ubiquitin-protein ligase n=2 Tax=Chelonia mydas... [more]
A0A1L8FBI0_XENLA8.780e-1456.72E3 ubiquitin-protein ligase n=2 Tax=Xenopus laevis... [more]
H3A180_LATCH1.310e-1357.14E3 ubiquitin-protein ligase n=3 Tax=Latimeria chal... [more]
A0A6P8FTV4_CLUHA2.010e-1360.94E3 ubiquitin-protein ligase n=1 Tax=Clupea harengu... [more]
UPI00149001432.100e-1360.32E3 ubiquitin-protein ligase DTX3L n=1 Tax=Notolabr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72702contigH-paniculata_contig72702:204..434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue6.5e-13
Seed eggNOG ortholog2880.D8LIP8
Preferred nameDTX3L
KEGG koko:K06058
KEGG Pathwayko04330,map04330
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000323,GO:0002230,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004842,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006325,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006996,GO:0007034,GO:0007041,GO:0008047,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010390,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0016043,GO:0016192,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032268,GO:0032269,GO:0032446,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033523,GO:0033554,GO:0034641,GO:0035561,GO:0035563,GO:0036211,GO:0042393,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0043900,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045739,GO:0045893,GO:0045935,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050688,GO:0050691,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051338,GO:0051340,GO:0051347,GO:0051348,GO:0051352,GO:0051438,GO:0051444,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051865,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097677,GO:0098772,GO:0140096,GO:1900180,GO:1900182,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901664,GO:1901666,GO:1902680,GO:1902965,GO:1902966,GO:1903320,GO:1903321,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1905666,GO:1905668,GO:2000112,GO:2000644,GO:2000646,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001032,GO:2001034,GO:2001141
EggNOG free text desc.regulation of NAD ADP-ribosyltransferase activity
EggNOG OGs2CTH7@1,2RGAW@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-25_003220.1
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930886.5009606-CDS-H-paniculata_contig72702:203..4341622930886.5009606-CDS-H-paniculata_contig72702:203..434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72702 204..434 -
1691481496.6703444-CDS-H-paniculata_contig72702:203..4341691481496.6703444-CDS-H-paniculata_contig72702:203..434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72702 204..434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72702.15243.1prot_H-paniculata_contig72702.15243.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig72702 204..434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig72702.15243.1

>prot_H-paniculata_contig72702.15243.1 ID=prot_H-paniculata_contig72702.15243.1|Name=mRNA_H-paniculata_contig72702.15243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MVFITRPGTQPEGTMNTRTYPVGHKPLAGYPAYGTIVILYYFPHGIQGPR
HPSPGKRYYGTSRTAYLPVSFLSNVA*
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mRNA from alignment at H-paniculata_contig72702:204..434-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig72702.15243.1 ID=mRNA_H-paniculata_contig72702.15243.1|Name=mRNA_H-paniculata_contig72702.15243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig72702:204..434- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTTATCACGAGACCAGGTACTCAGCCTGAAGGTACGATGAATAC
TCGCACCTATCCTGTCGGACATAAGCCCCTCGCGGGCTACCCGGCGTACG
GCACTATAGTCATCCTCTACTATTTTCCGCACGGCATTCAGGGTCCCCGG
CATCCCAGCCCGGGCAAGCGCTACTACGGGACTTCCAGAACGGCGTATCT
CCCGGTAAGTTTCTTGTCGAATGTTGCTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig72702:204..434-

>mRNA_H-paniculata_contig72702.15243.1 ID=mRNA_H-paniculata_contig72702.15243.1|Name=mRNA_H-paniculata_contig72702.15243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig72702:204..434- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTTATCACGAGACCAGGTACTCAGCCTGAAGGTACGATGAATAC
TCGCACCTATCCTGTCGGACATAAGCCCCTCGCGGGCTACCCGGCGTACG
GCACTATAGTCATCCTCTACTATTTTCCGCACGGCATTCAGGGTCCCCGG
CATCCCAGCCCGGGCAAGCGCTACTACGGGACTTCCAGAACGGCGTATCT
CCCGGTAAGTTTCTTGTCGAATGTTGCTTAGATGGTTTTTATCACGAGAC
CAGGTACTCAGCCTGAAGGTACGATGAATACTCGCACCTATCCTGTCGGA
CATAAGCCCCTCGCGGGCTACCCGGCGTACGGCACTATAGTCATCCTCTA
CTATTTTCCGCACGGCATTCAGGGTCCCCGGCATCCCAGCCCGGGCAAGC
GCTACTACGGGACTTCCAGAACGGCGTATCTCCCGGTAAGTTTCTTGTCG
AATGTTGCTTAG
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