mRNA_H-paniculata_contig7269.15239.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7269.15239.1
Unique NamemRNA_H-paniculata_contig7269.15239.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7269.15239.1 vs. uniprot
Match: D7FRM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.050e-19
Identity = 46/73 (63.01%), Postives = 60/73 (82.19%), Query Frame = 2 
Query:   56 MDDFISAARGGVTSIPIDRWVTTLRSFNQAHEGTWALSPVCGHDNKVHMVKVVLQLLQHTIGGSGRHRSRALG 274
            M++F++AA+GGVTSI  D+WV  LR F+ AHE TWA+SPVCG DNK  +V+VV++LL HT+G +GRHRSR LG
Sbjct:    1 MEEFLAAAKGGVTSISGDQWVAILRRFSTAHEATWAVSPVCGLDNKRILVRVVVELLHHTVGLNGRHRSRTLG 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7269.15239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM4_ECTSI1.050e-1963.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7269contigH-paniculata_contig7269:3383..5213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1321
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7269.15239.1prot_H-paniculata_contig7269.15239.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7269 4346..5158 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.81739-UTR-H-paniculata_contig7269:3382..43451622930885.81739-UTR-H-paniculata_contig7269:3382..4345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7269 3383..4345 -
1691481496.3900716-UTR-H-paniculata_contig7269:3382..43451691481496.3900716-UTR-H-paniculata_contig7269:3382..4345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7269 3383..4345 -
1622930885.871746-UTR-H-paniculata_contig7269:5158..52131622930885.871746-UTR-H-paniculata_contig7269:5158..5213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7269 5159..5213 -
1691481496.4198878-UTR-H-paniculata_contig7269:5158..52131691481496.4198878-UTR-H-paniculata_contig7269:5158..5213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7269 5159..5213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.8344011-CDS-H-paniculata_contig7269:4345..45511622930885.8344011-CDS-H-paniculata_contig7269:4345..4551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7269 4346..4551 -
1691481496.4003825-CDS-H-paniculata_contig7269:4345..45511691481496.4003825-CDS-H-paniculata_contig7269:4345..4551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7269 4346..4551 -
1622930885.8490467-CDS-H-paniculata_contig7269:5061..51581622930885.8490467-CDS-H-paniculata_contig7269:5061..5158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7269 5062..5158 -
1691481496.4113839-CDS-H-paniculata_contig7269:5061..51581691481496.4113839-CDS-H-paniculata_contig7269:5061..5158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7269 5062..5158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7269.15239.1

>prot_H-paniculata_contig7269.15239.1 ID=prot_H-paniculata_contig7269.15239.1|Name=mRNA_H-paniculata_contig7269.15239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MDDFISAARGGVTSIPIDRWVTTLRSFNQAHEGTWALSPVCGHDNKVHMV
KVVLQLLQHTIGGSGRHRSRALGLDGGIFEIDVMKDSNKVMARWGRVEQI
*
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mRNA from alignment at H-paniculata_contig7269:3383..5213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7269.15239.1 ID=mRNA_H-paniculata_contig7269.15239.1|Name=mRNA_H-paniculata_contig7269.15239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1831bp|location=Sequence derived from alignment at H-paniculata_contig7269:3383..5213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTATTCCGTTGCACACAAGACGTTTCAACACCAACGCATACTCACATCA
TTCGGATGGATGATTTCATTTCTGCAGCTCGTGGTGGCGTGACATCTATT
CCAATAGATCGATGGGTCACAACGTTGAGGTCGTTTAACCAGGCGCACGA
AGGTCAGTACAACTGAGCAGTGTTGCAGTAGTAGACTGGACTGGACTGTT
ACCGCCAGAAGCTCAGAGTAGAGCTCTATTATATTTAACAGCGTGAGCTT
TTATGACCTATACAACACAGTAGTATAATCTAGTGTACCCCGTGACCCCT
GTTACTGTGAGCTACATTCCCATTTTAGCGTTATATGTCTACCGCCCAGT
AGAATCACAACGTATAAAACGGCGGAGTACAACGATTTACTTGAGCATGT
AGCAGATTTACTAAATGTATTACTGTATTTTCACAGACGGGGTACTCTGT
GTAACAGTTGTAGGGTATTAGTGGTGGGATAGAAGATGTGGTTGTACCCA
CGTAGAGCTCCATAGTCACAGCGTTACAGCAACAGATCTGGTGGGTTAGC
TGGTGTGCTTAAGGTGATCGATGGTCTCGTTGCAATTGGGCAGGGAGCAA
TTGCAGTACGTCAAGGCTAATTTGGGCCTGACCGTTACCTATCCCTCCCC
ATCCATTTGCAGGAACGTGGGCACTGTCGCCTGTTTGCGGGCACGACAAC
AAGGTTCACATGGTTAAGGTAGTATTACAGCTTTTGCAGCACACCATTGG
AGGGAGTGGGAGACATCGGAGCCGAGCTCTTGGGCTGGACGGTGGGATCT
TTGAAATTGATGTGATGAAAGATAGCAATAAAGTCATGGCAAGATGGGGC
AGAGTTGAGCAGATCTAAGTATAGATCACGTCGCTGCTTTTGCTGATGCG
GCGTACTGTTGAGCTGTTGAGCCCACACCACTAAAGCACCGACGCGCAGA
CTTAATGGGAAGCAGAGGGGACGAACGCTCCCCTTACATATTCCGGCAAA
GACAGTCCCCAGCAAACATATTACAATGCGTTGCAGAGAGAGGGAAGAGG
GGAGAGGGGGGCGAACATTCACAACTCAACGCCTAAAATGCTCAGATACG
ACCTCCATGATACCGTTGTTGAGATTATGCGGCCGACCTCATATCTCAGT
TGCCTATAATACACTTATCGGCAACATTATATCAAAGAAGTGGTGCGGGG
ATACTTCGATGCCTTGGAGGGAAGGGTGACAGTAAGAAACTGAGCCCAGC
AGGCACGGAGACAATATCTTGTTCCCAAAAACGTTCTAGTGTACATGAAC
TGAGTGATCGCAACTATGCCAGGAAGGAGAGAGAATGCCGAAGCTTTGTT
TTTTGTCTCTCTCAAAAGAAAAGGGGTGCCACAATTAGGCTCTGTCCAAC
CGCTTCGAGGGGAAGGCAGTATTCTAGTGTGAGGAGCGACGGGCGGAGTG
GTAACACGAAATTGAGATACACGGAGGTGGGGTAGGGGGGAGGTGTCTTC
CGTTGCTTTAGCTAAGGTACGGCTGCTGCAAGGGCCAAAGTGCAAACCAA
AACATGTATGTAGTGACACAATGGTGGGTCTAAGGGAAGACGTGAAACCG
AAAACGTGCCGAAATTCTGCAGCTTATCTACAGTGGTAAGATCTGTTTAC
TACATACCATATGATAAGTAGTGCACCTATCTCCTGTGGATTTTGTTGTT
TTTTTCTGCTGATGCGATTGGGCCGGGTGTTCCTGCCCAGGGCATATTCC
CTCTGGCGCCACGCTAAGTTATTCTAAACATACAGAGTTGACAGTCCAAA
GCTCTTGGGTGGGGGGGTGTCATAGAAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7269:3383..5213-

>mRNA_H-paniculata_contig7269.15239.1 ID=mRNA_H-paniculata_contig7269.15239.1|Name=mRNA_H-paniculata_contig7269.15239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig7269:3383..5213- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGATTTCATTTCTGCAGCTCGTGGTGGCGTGACATCTATTCCAAT
AGATCGATGGGTCACAACGTTGAGGTCGTTTAACCAGGCGCACGAAGATG
GATGATTTCATTTCTGCAGCTCGTGGTGGCGTGACATCTATTCCAATAGA
TCGATGGGTCACAACGTTGAGGTCGTTTAACCAGGCGCACGAAGGAACGT
GGGCACTGTCGCCTGTTTGCGGGCACGACAACAAGGTTCACATGGTTAAG
GTAGTATTACAGCTTTTGCAGCACACCATTGGAGGGAGTGGGAGACATCG
GAGCCGAGCTCTTGGGCTGGACGGTGGGATCTTTGAAATTGATGTGATGA
AAGATAGCAATAAAGTCATGGCAAGATGGGGCAGAGTTGAGCAGATCTAA
GAACGTGGGCACTGTCGCCTGTTTGCGGGCACGACAACAAGGTTCACATG
GTTAAGGTAGTATTACAGCTTTTGCAGCACACCATTGGAGGGAGTGGGAG
ACATCGGAGCCGAGCTCTTGGGCTGGACGGTGGGATCTTTGAAATTGATG
TGATGAAAGATAGCAATAAAGTCATGGCAAGATGGGGCAGAGTTGAGCAG
ATCTAA
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