mRNA_H-paniculata_contig726.15233.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 261 bits (667), Expect = 3.260e-69 Identity = 183/562 (32.56%), Postives = 287/562 (51.07%), Query Frame = 1
Query: 598 ETAFLVTGELSFEPFSL--NGAESLPRNIDYVRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRW--KDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRD---GGR*--RLAVQGEIWVPSLA------------------------SYNDPVGYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQGGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHHPDILITAFPLRIFRDHRNVLMNCAE 2178
ETA L + ELS P + E+ P + V +S Y E+A++ E GH TGTF+ V + E ++P+ ++ FS+KTN+ G + ++++ +R + N+ + H + PS+A++K +LAVA ++ L H+D QA+ A LD +F++L AG G S K K RA+YGLKQ+G++W D LVE G +Q + C+FR+MVD V +I+ ++VDD++VAG ++DC L + + KF NL E W+ GC+ RD TL + +T ++D+++ERF++ S S +PAT ADLGP+R+ GG R A+ +WV + + + +GYL+ G T+ + + GLG + + + S G T++ K L S +Y A + EG K L+V+ VL+F+ PE I++ DN GA +L +NP SS R++HIDVRY+FI GL R+ + V + + H D+L A + HR LMN E
Sbjct: 713 ETA-LASHELSESPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSS--SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGS---GLGLAVYVDA-SYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSL--------SSTEAEYIA-------------AGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1246
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 261 bits (667), Expect = 6.920e-69 Identity = 183/562 (32.56%), Postives = 287/562 (51.07%), Query Frame = 1
Query: 598 ETAFLVTGELSFEPFSL--NGAESLPRNIDYVRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRW--KDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRD---GGR*--RLAVQGEIWVPSLA------------------------SYNDPVGYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQGGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHHPDILITAFPLRIFRDHRNVLMNCAE 2178
ETA L + ELS P + E+ P + V +S Y E+A++ E GH TGTF+ V + E ++P+ ++ FS+KTN+ G + ++++ +R + N+ + H + PS+A++K +LAVA ++ L H+D QA+ A LD +F++L AG G S K K RA+YGLKQ+G++W D LVE G +Q + C+FR+MVD V +I+ ++VDD++VAG ++DC L + + KF NL E W+ GC+ RD TL + +T ++D+++ERF++ S S +PAT ADLGP+R+ GG R A+ +WV + + + +GYL+ G T+ + + GLG + + + S G T++ K L S +Y A + EG K L+V+ VL+F+ PE I++ DN GA +L +NP SS R++HIDVRY+FI GL R+ + V + + H D+L A + HR LMN E
Sbjct: 1092 ETA-LASHELSESPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSS--SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGS---GLGLAVYVDA-SYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSL--------SSTEAEYIA-------------AGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1625
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 261 bits (667), Expect = 7.540e-69 Identity = 183/562 (32.56%), Postives = 287/562 (51.07%), Query Frame = 1
Query: 598 ETAFLVTGELSFEPFSL--NGAESLPRNIDYVRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRW--KDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRD---GGR*--RLAVQGEIWVPSLA------------------------SYNDPVGYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQGGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHHPDILITAFPLRIFRDHRNVLMNCAE 2178
ETA L + ELS P + E+ P + V +S Y E+A++ E GH TGTF+ V + E ++P+ ++ FS+KTN+ G + ++++ +R + N+ + H + PS+A++K +LAVA ++ L H+D QA+ A LD +F++L AG G S K K RA+YGLKQ+G++W D LVE G +Q + C+FR+MVD V +I+ ++VDD++VAG ++DC L + + KF NL E W+ GC+ RD TL + +T ++D+++ERF++ S S +PAT ADLGP+R+ GG R A+ +WV + + + +GYL+ G T+ + + GLG + + + S G T++ K L S +Y A + EG K L+V+ VL+F+ PE I++ DN GA +L +NP SS R++HIDVRY+FI GL R+ + V + + H D+L A + HR LMN E
Sbjct: 1255 ETA-LASHELSESPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSS--SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGS---GLGLAVYVDA-SYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSL--------SSTEAEYIA-------------AGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1788
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 246 bits (628), Expect = 1.030e-66 Identity = 159/509 (31.24%), Postives = 265/509 (52.06%), Query Frame = 1
Query: 649 NGAESLPRNIDYVRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRWKDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRDGGR*RLAVQGEIWVPSLASYNDPVGYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQGGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHHPDILITAFPLRIFRDHRNVLMN 2169
+ +++P + V SKY E A+++E+ GH KTGTFT V + E +K + +++FS+KTNE G +V+ ++++ +R ++ PS A++K V+AVA ++ ++L H+D QA++ A L +++R G G SGK VK+ RA+YGLKQ+G+ W D L+E G +Q + C+FR++VDG+V ++ ++VDD++VA E + LF + + KF + ++ E WY GC+ D + +T +++++++RF++T+ + PA + ADLGP+RD AV + + +G C T P +A L K +I S GR WN +M G+ + + + D Q GV G+ L+V+GVL+F+ PE I++ DN G +L E P SS+RS+HIDVR++FI L ++ K+ + + + H D+L HR LMN
Sbjct: 207 SNVKAVPMTYNDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDD---EPAVDKPV--------REAIG---CLMWTKLTRPDIA----LPLNKLQKIA--------HSPTGRMWNALVRIMSYLNFTKDFGITYVLGSGLDLSVFVDASYADNEVDKQPGVKGA-------LFVRGVLSFIAPETSGAKIKVLEDNKGTLALIEPPSSSARSKHIDVRFHFIRELFKSGKITTEYVPTGEQHADMLTKVLGREKVEYHRKALMN 682
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 254 bits (648), Expect = 1.870e-66 Identity = 179/563 (31.79%), Postives = 287/563 (50.98%), Query Frame = 1
Query: 598 ETAFLVTGELSFEPFSL--NGAESLPRNIDYVRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRW--KDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRD---GGR*--RLAVQGEIWVPSLA------------------------SYNDPVGYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQGGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHHPDILITAFP------LRIFRDHRNVL 2163
ETA L + ELS P + E+ P + V +S Y E+A++ E GH TGTF+ V + E ++P+ ++ FS+KTN+ G + ++++ +R + N+ + H + PS+A++K +LAVA ++ L H+D QA+ A LD +F++L AG G S K K RA+YGLKQ+G++W D LVE G +Q + C+FR+MVD V +I+ ++VDD++VAG ++DC L + + KF NL E W+ GC+ RD TL + +T ++D+++ERF++ S S +PAT ADLGP+R+ GG R A+ +WV + + + +GYL+ G T+ + + GLG + + + S G T++ K L S +Y A + EG K L+V+ VL+F+ PE I++ DN GA +L +NP SS R++HIDVRY+FI GL R+ + V + + H D+L A + +F D++ +
Sbjct: 1112 ETA-LASHELSESPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSS--SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGS---GLGLAVYVDA-SYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSL--------SSTEAEYIA-------------AGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRTGMPCIPVFEDNQGAI 1646
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 242 bits (617), Expect = 2.080e-66 Identity = 163/508 (32.09%), Postives = 260/508 (51.18%), Query Frame = 1
Query: 685 VRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRW--KDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRD---GGR*--RLAVQGEIWVPSLA--SYNDPVGYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQGGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHHPDILITAFPLRIFRDHRNVLMNCA 2175
V +S Y E+A++ E GH TGTF+ V + E ++P+ ++ F++KTN+ G + + ++++ +R + N+ + H + PS+A++K +LAVA ++ +L H+D QAF A LD +F+RL AG G S K VK RA+YGLKQ+G++W D LVE G +Q + C+FR+M D V D ++VAG +DDC L + + F +L E W+ GC+ RD TL + +T ++D+++ RF++ S S +PA+ D+GP+RD GG R A+ +WV + + + V + A A + L + K R L G+ G + + L V + A+ + + EG K L+V+ VL+F+ PE I++ DN GA +L +NP SS+RS+HIDVRY+FI GL R+ + + + + H D+L A + HR LMN A
Sbjct: 6 VTKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSS--SPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDL---GITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNFA 508
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE) HSP 1 Score: 240 bits (612), Expect = 9.430e-66 Identity = 167/551 (30.31%), Postives = 271/551 (49.18%), Query Frame = 1
Query: 658 ESLPRNIDYVRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRWKDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRDGGR*-----RLAVQGEIWV--------------------PSLASYNDPV---GYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQGGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHHPDILITAFPLRIFRDHRNVLMNCAEFLRTIITGSASTLR 2220
E++P SKY E A+++E+ GH KTGTFT V + E +K + +++FS+KTNE G +V+ ++++ +R ++ PS A++K V+AVA ++ ++L H+D QA++ A L ++R G G SGK VK+ RA+YGLKQ+G+ W D L+E +Q + C+FR++VDG+V ++ ++VDD++VA E + LF + + KF + +L E WY GC+ D + +T +++++++RF++T+ + PA + ADLGP RD R A+ +W P+ +N V YL G TF + + GL F + R+ + GG T++ S K S +Y A + EG K L+V+GVL+F+ PE I++ DN GA +L ENP SS+RS+HIDVR++FI L ++ K+ + + + H D+L HR MN ++ GS R
Sbjct: 13 EAVPMTYKDGMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGLKWVFSWKTNEKGLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPTRDDKPAVDKPVREAIGCLMWTKLTRPDIALPLNKLHKIAHSPTWRKWNALVRIMSYLNFTKDFGITFVRGS---GLDLSVFAEVDRRSTAGLAVTVGG-------TVVCASTKTQPVTAQ--------STSEAEYMA-------------AGEGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREQLEYHRKARMNLPMKCSLVLFGSVVPAR 532
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 244 bits (622), Expect = 2.850e-64 Identity = 166/529 (31.38%), Postives = 269/529 (50.85%), Query Frame = 1
Query: 658 ESLPRNIDYVRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRWKDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRDGGR*RLAVQGEIWVPSLASYNDPVGYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQGGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHHPD------ILITAFPLRIFRDHRNVLMNCAEFLRTIITGSASTLR 2220
E++P V SKY E A+++E+ GH KTGTFT V + E +K + +++FS+KTNE G +V+ ++++ +R ++ PS A++K V+AVA ++ ++L H+D QA++ A L +++R G G SGK VK+ RA+YGLKQ+G+ W D L+E G +Q + C+FR++VDG+V ++ ++VDD++VA E + LF + + KF + +L E WY GC+ D + +T +++ +++RF++T+ + PA + ADLGP+RD AV + + +G C T P +A L K +I S GR WN +M G+ VR L A + G K L+V+GVL+F+ PE I++ DN GA +L ENP SS+RS+HIDVR++FI L ++ K+ + + + H D +L+ F + N A + R +I T+R
Sbjct: 356 EAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIEGMLKRFDVTTTAFTPAATDADLGPKRDD---EPAVDKPV--------REAIG---CLMWTKLTRPDIA----LPLNKLQKIA--------HSPTGRIWNALVRIMSYLNFTKDFGIT--YVRGSGLDLCVFVDASYADNEVDRRSTTGLAGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFILELFKSGKITAEYVPTGEQHADMLTKYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIR 856
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE) HSP 1 Score: 236 bits (603), Expect = 7.500e-63 Identity = 163/516 (31.59%), Postives = 263/516 (50.97%), Query Frame = 1
Query: 646 LNGAESLPRNIDYVRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRWKDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRDGGR*RLAVQGEIWVPSLASYNDPVGYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQ------GGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHHPDILITAFPLRIFRDHRNVLMN 2169
L+ +++P V SKY E AI+ E+ GH KTGTFT V + E +K + +++FS+K NE G +V+ ++++ +R ++ PS A++K V+AVA ++ ++L H+D QA++ A L +++R G G SGK VK+ RA+YGLKQ+G+ W D L+E G +Q + C+F+++VDG+V ++ ++VDD++VA E + LF + + KF + +L E Y GC+ D + +T ++++++RF++T+++ A + ADLGP+RD AV + + +G C T P +A L K +I S GR WN +M G+ R S L Q D + GV G K L+V+GVL+F+ PE I++ DN A +L ENP SS+RS+HIDVR++FI L ++ K+ + + + H D+L HR LMN
Sbjct: 258 LSDVQAVPMTYKDVMCSKYNVFWEAAIKEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIVAADEGEPEELFASLNKKFPVKDLGECTCYDGCAIAMDVENGITKLSQTAHIESMLKRFDVTTIAFTTAATDADLGPKRDD---EPAVDKPV--------REAIG---CLMWTKLTRPDIA----LPLNKLQKIA--------HSPTGRIWNALVRIMSYLNFTKDFGI----TYVRGSGLDQSVFVDASYADNEVDRLSTTGV----AGVKEALFVRGVLSFVAPETSGAKIKVLEDNKWALALIENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKLEYHRKALMN 739
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 236 bits (601), Expect = 2.760e-62 Identity = 169/537 (31.47%), Postives = 273/537 (50.84%), Query Frame = 1
Query: 598 ETAFLVTGELSFEPFSL--NGAESLPRNIDYVRQSKYCPIREKAIQREMGGHAKTGTFTVVSDSEE-KKPLKGQFIFSYKTNEMGDVVEIQSQIGSRW--KDTNLRHGHGEVFASTPSTAAVKKVLAVAVQEDQQLFHFDTTQAFVQA-LDHILFMRLRAGGGLSSGKTVKLFRAMYGLKQAGKRWNTCLVDELVEFGMKQYMDEHCLFREMVDGKVTLILSVHVDDMVVAGKEDDCNRLFDAFSGKFSMANLEELAWYTGCSFNRDWSKDTLTMDRTVFVDNLMERFEITSVSELPATSLADLGPRRD---GGR*--RLAVQGEIWVPSLA------------------------SYNDPVGYLECCASCGPTFPQLAYITGLGF*KFCRILTRTGLWN*PSCGGRGWNWTYTLMLISRKNLQTGVLCCDVRRRCSQL*QQYAALCHCFDYQGGVHGSWEGAKLGLYVKGVLAFLQPELYSIGIRLF*DNAGAQSLAENPRSSSRSRHIDVRYNFIHGLVRAEKVLVHHADSKDHH 2103
ETA L + ELS P + E+ P + V +S Y E+A++ E GH TGTF+ V + E ++P+ ++ FS+KTN+ G + ++++ +R + N+ + H + PS+A++K +LAVA ++ L H+D QA+ A LD +F++L AG G S + K RA+YGLKQ+G++W D LVE G +Q + C+FR+MVD V +I+ ++VDD++VAG ++DC L + S KF NLEE W+ GC+ RD TL + +T ++D++++RF++ S S +PA+ DLGP+RD GG R A+ +WV + + + +GYL+ G T+ + + GLG + + + S G T++ K Q+ V +Y C K L+V+ VL+F+ PE I++ DN GA +L +NP SS R++HIDVR++FI L R+ + V + + H
Sbjct: 267 ETA-LASHELSESPIGKRPSDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSS--SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGS---GLGLAVYVDA-SYADTEDRRSVSGLATTVGGTVVSHGSKT-QSIVSLSSTXXXXXXTEAEYFTAGEC-------------VKEALFVRAVLSFVAPETSGSSIQVL-DNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSGDISVKFIPTTEQH 781 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig726.15233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig726.15233.1 >prot_H-paniculata_contig726.15233.1 ID=prot_H-paniculata_contig726.15233.1|Name=mRNA_H-paniculata_contig726.15233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=397bp MPGSASGASSSTSSQERVDNGTISGEGPPLALMDREARRLEAYNLPAPDLback to top mRNA from alignment at H-paniculata_contig726:2347..5735- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig726.15233.1 ID=mRNA_H-paniculata_contig726.15233.1|Name=mRNA_H-paniculata_contig726.15233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3389bp|location=Sequence derived from alignment at H-paniculata_contig726:2347..5735- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig726:2347..5735- >mRNA_H-paniculata_contig726.15233.1 ID=mRNA_H-paniculata_contig726.15233.1|Name=mRNA_H-paniculata_contig726.15233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2382bp|location=Sequence derived from alignment at H-paniculata_contig726:2347..5735- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |