mRNA_H-paniculata_contig7257.15231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A6H5KNT2_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT2_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.270e-19 Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
GVVLHSPI+SGMRVLT+SRALSCLDIYPN+ R S+ CPVMVMHG +DEEV
Sbjct: 255 GVVLHSPILSGMRVLTESRALSCLDIYPNVDRASRITCPVMVMHGARDEEV 305
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A7S2XWH1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWH1_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.540e-19 Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
G+VLHSP MSGMRVLT +R L+CLDIYPNL R+++ +CPV+V+HG +D EV
Sbjct: 18 GIVLHSPFMSGMRVLTSNRCLACLDIYPNLSRVAEVQCPVLVIHGQEDREV 68
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A448Z4K0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4K0_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.190e-18 Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
G+VLHSP MSGMRVLT SRAL+CLDIYPN+ R+++T+CPVMV+HG DEEV
Sbjct: 327 GMVLHSPFMSGMRVLTPSRALACLDIYPNIDRVAKTKCPVMVIHGRLDEEV 377
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A1E7FIN2_9STRA (Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FIN2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.620e-18 Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
G++LHSP MSGMRVLT SRAL+CLD+YPN+ R+ +T+CPVMV+HG DEEV
Sbjct: 199 GMILHSPFMSGMRVLTPSRALACLDVYPNIDRVRKTKCPVMVIHGRLDEEV 249
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A7S4AEP6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AEP6_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.760e-18 Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
G+VLHSP MSGMRVLT SRAL+CLDIYPN+ R+++T+CPVMV+HG D+EV
Sbjct: 301 GMVLHSPFMSGMRVLTPSRALACLDIYPNIDRVAKTKCPVMVIHGRLDDEV 351
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A7S1H3C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3C4_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 7.710e-18 Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
G++LHSP SGMRVLT SR L+CLDI+PN+ RI RCPVM++HG D+EV
Sbjct: 23 GIILHSPFTSGMRVLTPSRLLACLDIFPNINRIQHVRCPVMIIHGKMDQEV 73
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A6S9I0E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I0E5_HETAK) HSP 1 Score: 81.6 bits (200), Expect = 3.280e-17 Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
GV+LHSP +SGMRV T SRAL+CLDI+PN+ RI + +CPVMV+HG+ DEEV
Sbjct: 185 GVILHSPFLSGMRVFTASRALACLDIFPNIKRIQKVQCPVMVIHGLADEEV 235
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A7S3VG10_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VG10_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 8.050e-17 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEVRM 159
G++LHSP MSGMRVLT SRAL+CLDI+PN+ RI + + PVMV+HGM DEEV +
Sbjct: 343 GLILHSPFMSGMRVLTPSRALACLDIFPNINRIKKVQSPVMVIHGMLDEEVHL 395
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A6U3R8T6_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R8T6_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.020e-16 Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
G++LHSP SGMRVLT SRAL+CLDI+PN+ RI CP +V+HGMKDEEV
Sbjct: 322 GLILHSPFTSGMRVLTPSRALACLDIFPNIDRIKHVSCPTLVIHGMKDEEV 372
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: B8CCP0_THAPS (Hydrolase_4 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCP0_THAPS) HSP 1 Score: 77.8 bits (190), Expect = 2.000e-16 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
G+VLHSP SGMRVLT SRAL+CLDI+PN+ RI + CPV ++HG KD EV
Sbjct: 96 GLVLHSPFTSGMRVLTPSRALACLDIFPNIDRIKKVSCPVFIIHGQKDVEV 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7257.15231.1 >prot_H-paniculata_contig7257.15231.1 ID=prot_H-paniculata_contig7257.15231.1|Name=mRNA_H-paniculata_contig7257.15231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp MSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEVRMback to top mRNA from alignment at H-paniculata_contig7257:11246..11404- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7257.15231.1 ID=mRNA_H-paniculata_contig7257.15231.1|Name=mRNA_H-paniculata_contig7257.15231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig7257:11246..11404- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7257:11246..11404- >mRNA_H-paniculata_contig7257.15231.1 ID=mRNA_H-paniculata_contig7257.15231.1|Name=mRNA_H-paniculata_contig7257.15231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig7257:11246..11404- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |