mRNA_H-paniculata_contig7257.15231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7257.15231.1
Unique NamemRNA_H-paniculata_contig7257.15231.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A6H5KNT2_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.270e-19
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
            GVVLHSPI+SGMRVLT+SRALSCLDIYPN+ R S+  CPVMVMHG +DEEV
Sbjct:  255 GVVLHSPILSGMRVLTESRALSCLDIYPNVDRASRITCPVMVMHGARDEEV 305          
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A7S2XWH1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWH1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.540e-19
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
            G+VLHSP MSGMRVLT +R L+CLDIYPNL R+++ +CPV+V+HG +D EV
Sbjct:   18 GIVLHSPFMSGMRVLTSNRCLACLDIYPNLSRVAEVQCPVLVIHGQEDREV 68          
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A448Z4K0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4K0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.190e-18
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
            G+VLHSP MSGMRVLT SRAL+CLDIYPN+ R+++T+CPVMV+HG  DEEV
Sbjct:  327 GMVLHSPFMSGMRVLTPSRALACLDIYPNIDRVAKTKCPVMVIHGRLDEEV 377          
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A1E7FIN2_9STRA (Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FIN2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.620e-18
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
            G++LHSP MSGMRVLT SRAL+CLD+YPN+ R+ +T+CPVMV+HG  DEEV
Sbjct:  199 GMILHSPFMSGMRVLTPSRALACLDVYPNIDRVRKTKCPVMVIHGRLDEEV 249          
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A7S4AEP6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AEP6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.760e-18
Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
            G+VLHSP MSGMRVLT SRAL+CLDIYPN+ R+++T+CPVMV+HG  D+EV
Sbjct:  301 GMVLHSPFMSGMRVLTPSRALACLDIYPNIDRVAKTKCPVMVIHGRLDDEV 351          
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A7S1H3C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3C4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.710e-18
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
            G++LHSP  SGMRVLT SR L+CLDI+PN+ RI   RCPVM++HG  D+EV
Sbjct:   23 GIILHSPFTSGMRVLTPSRLLACLDIFPNINRIQHVRCPVMIIHGKMDQEV 73          
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A6S9I0E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I0E5_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 3.280e-17
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
            GV+LHSP +SGMRV T SRAL+CLDI+PN+ RI + +CPVMV+HG+ DEEV
Sbjct:  185 GVILHSPFLSGMRVFTASRALACLDIFPNIKRIQKVQCPVMVIHGLADEEV 235          
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A7S3VG10_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VG10_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.050e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEVRM 159
            G++LHSP MSGMRVLT SRAL+CLDI+PN+ RI + + PVMV+HGM DEEV +
Sbjct:  343 GLILHSPFMSGMRVLTPSRALACLDIFPNINRIKKVQSPVMVIHGMLDEEVHL 395          
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: A0A6U3R8T6_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R8T6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.020e-16
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
            G++LHSP  SGMRVLT SRAL+CLDI+PN+ RI    CP +V+HGMKDEEV
Sbjct:  322 GLILHSPFTSGMRVLTPSRALACLDIFPNIDRIKHVSCPTLVIHGMKDEEV 372          
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Match: B8CCP0_THAPS (Hydrolase_4 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCP0_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 2.000e-16
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 GVVLHSPIMSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEV 153
            G+VLHSP  SGMRVLT SRAL+CLDI+PN+ RI +  CPV ++HG KD EV
Sbjct:   96 GLVLHSPFTSGMRVLTPSRALACLDIFPNIDRIKKVSCPVFIIHGQKDVEV 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7257.15231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNT2_9PHAE1.270e-1980.39Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2XWH1_9STRA4.540e-1966.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A448Z4K0_9STRA1.190e-1874.51Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FIN2_9STRA1.620e-1870.59Alpha/beta-hydrolase n=1 Tax=Fragilariopsis cylind... [more]
A0A7S4AEP6_9STRA2.760e-1872.55Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1H3C4_9STRA7.710e-1864.71Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
A0A6S9I0E5_HETAK3.280e-1768.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3VG10_9STRA8.050e-1767.92Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U3R8T6_9STRA1.020e-1668.63Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
B8CCP0_THAPS2.000e-1666.67Hydrolase_4 domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7257contigH-paniculata_contig7257:11246..11404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue3.3e-09
Seed eggNOG ortholog2850.Phatr28215
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs2XBWF@2836,COG1073@1,KOG1552@2759
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-28_001050.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.7376044-CDS-H-paniculata_contig7257:11245..113801622930884.7376044-CDS-H-paniculata_contig7257:11245..11380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7257 11246..11380 -
1691481495.9371426-CDS-H-paniculata_contig7257:11245..113801691481495.9371426-CDS-H-paniculata_contig7257:11245..11380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7257 11246..11380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.7513566-UTR-H-paniculata_contig7257:11380..114041622930884.7513566-UTR-H-paniculata_contig7257:11380..11404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7257 11381..11404 -
1691481495.9467952-UTR-H-paniculata_contig7257:11380..114041691481495.9467952-UTR-H-paniculata_contig7257:11380..11404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7257 11381..11404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7257.15231.1prot_H-paniculata_contig7257.15231.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7257 11246..11380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7257.15231.1

>prot_H-paniculata_contig7257.15231.1 ID=prot_H-paniculata_contig7257.15231.1|Name=mRNA_H-paniculata_contig7257.15231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MSGMRVLTDSRALSCLDIYPNLGRISQTRCPVMVMHGMKDEEVRM
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mRNA from alignment at H-paniculata_contig7257:11246..11404-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7257.15231.1 ID=mRNA_H-paniculata_contig7257.15231.1|Name=mRNA_H-paniculata_contig7257.15231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig7257:11246..11404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTGGTGTTGCACAGTCCCATCATGAGCGGCATGCGCGTACTAACGGA CAGCCGTGCGCTGTCATGTTTGGACATTTACCCCAACCTCGGCAGGATTT CGCAGACCCGGTGTCCTGTGATGGTCATGCACGGCATGAAGGACGAGGAG GTGCGTATG
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Coding sequence (CDS) from alignment at H-paniculata_contig7257:11246..11404-

>mRNA_H-paniculata_contig7257.15231.1 ID=mRNA_H-paniculata_contig7257.15231.1|Name=mRNA_H-paniculata_contig7257.15231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig7257:11246..11404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGGCATGCGCGTACTAACGGACAGCCGTGCGCTGTCATGTTTGGA
CATTTACCCCAACCTCGGCAGGATTTCGCAGACCCGGTGTCCTGTGATGG
TCATGCACGGCATGAAGGACGAGGAGGTGCGTATGATGAGCGGCATGCGC
GTACTAACGGACAGCCGTGCGCTGTCATGTTTGGACATTTACCCCAACCT
CGGCAGGATTTCGCAGACCCGGTGTCCTGTGATGGTCATGCACGGCATGA
AGGACGAGGAGGTGCGTATG
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