mRNA_H-paniculata_contig7243.15216.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7243.15216.1
Unique NamemRNA_H-paniculata_contig7243.15216.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7243.15216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7243contigH-paniculata_contig7243:4572..8885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size304
Cds size177
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7243.15216.1prot_H-paniculata_contig7243.15216.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7243 4572..8759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.492228-CDS-H-paniculata_contig7243:4571..46921622930882.492228-CDS-H-paniculata_contig7243:4571..4692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7243 4572..4692 +
1691481494.9842467-CDS-H-paniculata_contig7243:4571..46921691481494.9842467-CDS-H-paniculata_contig7243:4571..4692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7243 4572..4692 +
1622930882.5113413-CDS-H-paniculata_contig7243:8703..87591622930882.5113413-CDS-H-paniculata_contig7243:8703..8759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7243 8704..8759 +
1691481494.993452-CDS-H-paniculata_contig7243:8703..87591691481494.993452-CDS-H-paniculata_contig7243:8703..8759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7243 8704..8759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.5314498-UTR-H-paniculata_contig7243:8759..88851622930882.5314498-UTR-H-paniculata_contig7243:8759..8885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7243 8760..8885 +
1691481495.0012512-UTR-H-paniculata_contig7243:8759..88851691481495.0012512-UTR-H-paniculata_contig7243:8759..8885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7243 8760..8885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7243.15216.1

>prot_H-paniculata_contig7243.15216.1 ID=prot_H-paniculata_contig7243.15216.1|Name=mRNA_H-paniculata_contig7243.15216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
SDVPTNLLLSRRSGLGKQTKEDNNRERARRQQSNTRVNAGDFNQTHKKDS
NQQSGQLR*
back to top

mRNA from alignment at H-paniculata_contig7243:4572..8885+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7243.15216.1 ID=mRNA_H-paniculata_contig7243.15216.1|Name=mRNA_H-paniculata_contig7243.15216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4314bp|location=Sequence derived from alignment at H-paniculata_contig7243:4572..8885+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGACGTACCGACCAACCTTTTACTCTCGAGGCGATCAGGTCTTGGAAA
ACAGACAAAAGAGGACAATAATAGAGAGAGGGCACGACGACAACAATCGA
ACACGAGAGTGAACGCTGGAGGTAAGATCTCGTGGCGTACCATTAAAAGT
TTCCCTGGCTTTGGCCCTCCGTAAAATACTCGTTGCGTTCGCTGTCCACT
ACACGAGCGAACGGATCAGATGGTCGATAACCGCGATAACCGCACAGCAG
ACTGAAATCACTCGTTTCTAGTGTGCTCCGTTCCAGACGTTTCTCGTGCA
CCAGTTTGGCTGTCGGCCCCATAATATCGGGGCCGTATAATGCTTGTAGC
GAGAGACGAACGAGCGGGGTTTTTGGTCGATGTCGTCGTGTGGTTGTGTT
TTCTCTCTGTAATTAATATCTCTGAGCACTCCTGGTCAAACTAAAACACG
ATGGGGCGACATGGGCAGCTGTGTCGTCCGCGAGTTATAAAACAGCTCCC
TATCGTCACAAGGCACACACGACGGAAAGAGCAAAATTGTTTCGGAGTTT
CGCGGCCCTCGTAAGGATGATTGCTTATAGAATGCCCGCTGCTCGTCGCC
AGTTTGGTCAACTGCTGCCCCCCCGACCCGCTCACCATTTGGCTCCCACA
ACATTATGTCCATGCTTGCCTAAGTCATGCAGGACGTAGGGCAAGGTTTG
TTGGGACCAACTTTCTGTGTCCCAAAAGGAAGCTGCGTTGGTATTCGCTG
TCGTCCTTTCTGTTGGCCTCTTGAGGTTCGAAAGCTCTTCTGTTCACTGA
CTGACTGTACTTGCTGTCTGTTGTGTGATCTCTTTACTTCACATGAGAAC
TTCGGGTCGACGGTGCGTTGTATATTACTGTCATATGCGAGCCTCGTTCG
CGATAGACGGGCGGGTCGTAATATCAGCACCCGTGCAGCTAGCTCACTGC
TAGTTGTCTAGCTTCTCCAGTGATAGTTGGCAGACCTTCTGTGCTATTGA
CGCATAGCTATGTGGAGTAAAGAGTACAGTTAAGGCAGTGGTTCGTTGTT
CAGGCAGGGAAGTTGACAGCAGTGAGTTGTCGTTTTTGCGTGCATGTGTA
GTTGGTGTTAGAGCTCACCGACTGTCTTCTTACTGTACGGTACTGGCTGT
TGTACTGTATGTAGATGTGGTTGTAATCCTCGAGGCACCTGCTGTATGTA
GTAGCGGCCATTACATACCTTGCCCCTCGTGTCTACTATAGACGTTGCTT
CGAAAGCCCACTTCCCTAGTGTTGTAGCGTGGGATTCAAGCGCTATTACC
TTTGTTTTAGTCTGCTTGCATCGTACTAAATTTTCCTTCTCTCTTGACTC
GTCGGTCAGTCCCACTGTCAAGTAAGTAGTACCAGCCACAACATCCTGCC
GCAAGTGGGACGGTAACTGTATACCCAGCGATGCATCGCAACAAAAATTC
GTGTTATTGGTTTTGTACGCTCCCTACTGTGAACACATGAATACATTGAT
TGACCCGACCGTCATGGTGGTCCGTCCTCGGTTGATCAAGTTGTTTTCAG
TATAGAGGCGCCTTTTGGGTATTAAAGTGTAACTAAATCAGTACCTTAGT
AAATTGCCGCGTGTACGTTGTTTCACGTCGCCCCGTTTATGGCTACTTGC
TCTGCCGGTGTACATATATGGCTAGTGCAGAATAGGGCAGGATTGTGCAG
ACAGGGATTTGTTTATATACCGTTCATACTGTACTATATGTAGCAGTACT
GTCTGTACTGTCAAGGTCCCTGTCCATTTATCAGGTTAAATCGCGATTTG
TGAACATGTTTGAATGGTGGGCCGATAAACAATGATAATCCTATTGCACG
AGGTCAGACGTTACATGAGAACACCTATTTCATCCATTTACCCCCGGATG
TAACAGTTTCAGAATACAAATGGAAATTGCCTTGGACCAGCGAATAGACA
CGAAATGTGAATATTTACTTTTAGTGTTATAAATAGTGTTCAATAAGTAC
TTGCCGCCGTAGGAAGCTCTATGCAGACGTTTTTAACGGTACTGAATTAG
ACAGATGCAAAAAAAGGCAGAAAACGTGAACACATGAGGATCTGACTTGA
TTGGGATCTTCATCGCAGACGAAATCAGATAGAAATACTGTAGCGTTATA
TGGACATGGAACGTGCGTGGGCCAAGTCTTGGGCTATGACAATACCGCAA
CCCTTTTCCCCCACGGGTCCGTCTAATGCCGACTTCAAAGACAGTGAATA
ACGACGTAGAAGACATGATTACAGGGATAGGGAGCTGTTGCGGTCCAGAC
AGACGGGTTTCAGTATAGCTATGTTATTGTTACAGGCCTATTTTTTCCTT
TATATTTTTGGTTAATGAATTTTTATTATTTATTTTGTTGGCTTTCTTTT
GTATTTTTTTCGGTTATTGTTTTCCAATTATTTTTTATAGTTTTTTTTTT
TTAATTCCTCTTTTTTTTTTTTATATTTTAATTTTTTTAGTAAAGTACAT
AAGAAGTAGCTGGCGTGGTTTTGCCCACAGAGGCTCGATTTAGAACAAAA
AAATGATCTGATACATCAATTTTTGAGCGCTTGCAGTCAGTCGCTGTGAG
CAGAATCATGAAAGCTCCTTGTCTACGCCATACGTACGTCCTGTAACGAA
CTGGCTGTCTGAACAGATTATATCATCGTAGACCTCTTATCGTCCCGCTT
TTTCCAGCTGAGAAATAGGTTTGAATTCGATGGAAAGAGGCACCCAAAAT
TTTACACATAATTTTTTACCTCTTTTTTTACCCCCTCGTGGATGTGCAGC
TTGTAGTCTTGTAGTGTGTGTGTGTGTGTGTGTGTTGTACTGCATTGAAA
CAGTCGTGATATACCCGTCAACGCCTCGAGAATACAAAAAACTTCGAGCA
CTTTGCCAACTAGATTAGTCTTTCCGTTGGGGCGTGTGTGTGTGTCTGTG
TCTGTGTCCAGTCGCGACTTATATCTGCCAAGTTCTCCGAATATCGATCA
AGTAAACAGGTATCACCTTCACACACATGCAATACACAACCTTGACACGT
ATAGAATATGTTCCGTACCCGGTAAAACCCGATAGAGCACCTACCTATTT
CGTGACGCTGCGAGTTTGGTGCTGTACACTCGTGGAATTAGTTTATATAC
TTAGGGTTATTTATAGAGTGGTGGTACAGTATTGCACACACGAAAAAGTT
GTGAAAGGGTGGAAGACAGCCCATCAAAATCCACGACGTGCTAGGATATT
GCGATTGCGGATAACGTGAATGCGAGGTACACCCCTTTGTCCACCTGTCT
TGCGGTGGCACTTGCTGTGTCCTGGGTTTTTCGATTTTTGGGCTTGCCTT
CTCGCCTTGCAACCGTTTCATTGTTTTTACAACCACTTCGCAGTTCTTAG
GGTACTGGCACAACAGCGACACATGCTCCTTTGCTTTGCACGTTTGTACT
GCCAGTGCGTGTTGGCCTTTTAGTGTTTGATGCAGTTTTCCTGCCACCAT
CCTTGCGCACTTCTTTATAACTCGCAGTAGAGCCACGGCTATTCCCGTGC
AGTTTGTACATGTCCTCAACCCATGGACTCGCTGCGCTCGCAGTGGGGGC
TCGGCTAGCGTTCAACAACGCGCGCTACGCTGGCATGAAGATTCGTCTTC
AGGAGATACTTGAGTACAGAATCGAAAGCTGTTCCGAAACGGTGACCACC
TGATCAACACTGTAGCTTACAGGCTCATCACCCAGGGTGAAACCGTTTCC
ACGTTCGATACTCGAGAAGCAAGACGGTACACTATGCAGTCGAAAGAGCC
TGTCTATTCCATGACAATAGCGTGGTGACCAGTCTACTAAAAAAATGGAT
CGTGTCAAGGTAGGTAACGATGAGGTGCGAGGGGGGTGACGTGCGTTGTA
TTGTGCTCCTCGGTTTGTCTACTTGATGACAAGATATTATGCACTTGCAG
CATCACTGATAGATATCTGAGTACGCCTAAACAATTGACTGCGTGCATCT
GTATACCACTACCTATCAGCACACGTAACTTCAAATCTAAATTTTAACCT
CAGCATATGACTAGAAAAATTAAATGCCCCCCTCCCTCCCCCTCCTCCTC
TTCGACTCCATGTCACATTGCGTCCGATCCAGACTTCAACCAAACGCACA
AGAAAGACAGCAACCAACAGTCGGGGCAACTTCGTTAGTCTCCCTTCAAG
AACATAACTGCCCTTATCGAGCAAGCCCTACCCAGGGCTTTCCTCCGGCC
GTCATACGGGAGAAGATTCGAAAGCGGCCATGTGGAGGCCGAATATGGAC
GGACCAGGGTCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7243:4572..8885+

>mRNA_H-paniculata_contig7243.15216.1 ID=mRNA_H-paniculata_contig7243.15216.1|Name=mRNA_H-paniculata_contig7243.15216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig7243:4572..8885+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGACGTACCGACCAACCTTTTACTCTCGAGGCGATCAGGTCTTGGAAA
ACAGACAAAAGAGGACAATAATAGAGAGAGGGCACGACGACAACAATCGA
ACACGAGAGTGAACGCTGGAGAGCGACGTACCGACCAACCTTTTACTCTC
GAGGCGATCAGGTCTTGGAAAACAGACAAAAGAGGACAATAATAGAGAGA
GGGCACGACGACAACAATCGAACACGAGAGTGAACGCTGGAGACTTCAAC
CAAACGCACAAGAAAGACAGCAACCAACAGTCGGGGCAACTTCGTTAGAC
TTCAACCAAACGCACAAGAAAGACAGCAACCAACAGTCGGGGCAACTTCG
TTAG
back to top