mRNA_H-paniculata_contig7203.15183.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7203.15183.1
Unique NamemRNA_H-paniculata_contig7203.15183.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 387 bits (994), Expect = 2.840e-125
Identity = 196/254 (77.17%), Postives = 224/254 (88.19%), Query Frame = 1 
Query:    1 YTYTFRCIQSVNYKEGGVAKGDQPATVGVGGSSYGYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFKGIADMTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNYDKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRDKEMYKRIITPADAKLTEDVLRSFGQALKDSVQTGDLR 762
            YT + RCIQSVNYKEGGVA G++  +     S +G+EASEVPE+ERKEF+TKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQ AYFD+AG+WT++H+FKG  D+ TD +L+DFKNFV KRQ EG Y+LAAIYGPQLDSL+S+LE SNL +Y+KL++PL KRLTQEML AFDSRKE+IR++LEEAILSRYLPESMVLRK LD DPQF   LELV+DKEMY RIITPADAKLTEDVLRSFGQAL+DSVQ GDLR
Sbjct:  661 YTPSGRCIQSVNYKEGGVAMGEEKQS-----SGFGFEASEVPELERKEFVTKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQGAYFDFAGQWTKTHTFKGT-DVVTDDVLRDFKNFVYKRQKEGTYDLAAIYGPQLDSLESILEDSNLGHYEKLVEPLPKRLTQEMLTAFDSRKERIRASLEEAILSRYLPESMVLRKQLDRDPQFQVALELVQDKEMYNRIITPADAKLTEDVLRSFGQALEDSVQRGDLR 908
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BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: A0A835Z050_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z050_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.730e-48
Identity = 93/202 (46.04%), Postives = 125/202 (61.88%), Query Frame = 1 
Query:  103 GYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFKGIADMTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNYDK-LIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRDKEMYKRIITPADAKLTED 705
            GY A  V E +RKEF T HGRVV DGGG+EADV     + S+LE+AL VQN YFDYAG W+ +H+FK    +  D    DF+ +V+++Q  G Y+L A+Y  Q  SL+S L    L N     + P+ + +  EM+  FD++K  IR ALE AILSRYLPESM+L++ L TD QF   L +V+D+  Y  ++    A   ED
Sbjct:  541 GYTARAVREKDRKEFKTTHGRVVRDGGGIEADVVAPEKQTSSLEVALLVQNVYFDYAGHWSATHAFKNTDRVVDDATFNDFRRYVVEKQRAGDYDLLALYQSQFKSLESALTEGGLQNLATGKLDPIKRSVLDEMMRGFDTQKGTIREALENAILSRYLPESMLLKRQLTTDDQFKLALSIVKDRPRYDSLLAGPAADAAED 742
[Close]
BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: W7T550_9STRA (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T550_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.810e-39
Identity = 87/236 (36.86%), Postives = 134/236 (56.78%), Query Frame = 1 
Query:   10 TFRCIQSVNYKE-----GGVAKGDQPATVG----------VG-GSSYGYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFK---GIAD---MTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNYDKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRD 651
            T RCIQSV Y       GGV  G +    G          +G G   GY A+++PE ER+ F T HGRVV DGGGVEAD+KV  P+ S LE++LQ Q  +FD+A EW+  H++    G+ +   + TD   ++F ++V +++ EG      ++   L+ L + L+A+      K +  L   + +E+   F++ K QI+  +E+AIL+RY PES++ R AL+ DPQ    +E V++
Sbjct:   35 TGRCIQSVRYSSPPPAGGGVMLGTEEDGAGKTKDSLQKRRIGLGREKGYLANDIPESERQTFYTTHGRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPGAGVQEGRPLVTDATYQEFVDYVGRKEKEGSVRYDVLFNGALEPLRTALDATEYKKAGKGLDALKAAVREEVSREFNTHKAQIKEEVEQAILARYQPESLLRRLALEGDPQVKVAVEAVKE 270
[Close]
BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: I2CP28_NANGC (Carboxyl-terminal protease (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP28_NANGC)

HSP 1 Score: 151 bits (381), Expect = 5.000e-39
Identity = 88/239 (36.82%), Postives = 136/239 (56.90%), Query Frame = 1 
Query:    1 YTYTFRCIQSVNYKE-----GGVAKGDQPATVG----------VG-GSSYGYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFK---GIAD---MTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNYDKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRD 651
            YT + RCIQSV Y       GGV  G +    G          +G G   GY A+++PE ER+ F T HGRVV DGGGVEAD+KV  P+ S LE++LQ Q  +FD+A EW+  H++    G+ +   + TD   ++F ++V +++ EG      ++   L+ L + L+A+      K +  L   + +E+   F++ K QI+  +E+AIL+RY PES++ R AL+ DPQ    +E V++
Sbjct:  263 YTPSGRCIQSVRYSSPPPAGGGVMLGTEEDGAGKTKDSLQKRRIGLGREKGYLANDIPESERQTFYTTHGRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPGAGVQEGRPLVTDATYQEFVDYVGRKEKEGSVRYDVLFNGALEPLRTALDATEYKKAGKGLDALKAAVREEVSREFNTHKAQIKEEVEQAILARYQPESLLRRLALEGDPQVKVAVEAVKE 501
[Close]
BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: A0A7S4IQW6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQW6_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.810e-37
Identity = 83/222 (37.39%), Postives = 127/222 (57.21%), Query Frame = 1 
Query:    1 YTYTFRCIQSVNYKEGGVAKGDQPATVGVGGSSYGYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFKGIADMTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNYDKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRDKEMYK 666
            YT + RCIQS NYKEGG          G+      Y+ S+V + +++ F TK+GR V DGGG+EAD+KV++P+ SALE+ L       D+A +W++ H      D+  +   ++F+ FV  R  EG  NL A+Y   LD L   L+ S      K +  L   + +++   +D+ K+ I+  +  +IL+RYLPESM++ +++ TD Q LA  ELV  KE+ K
Sbjct:  626 YTPSGRCIQSTNYKEGG----------GLNAEDGRYKVSKVKDKDKQVFYTKNGREVKDGGGIEADLKVEVPRASALEVTLLRSGVMTDFAADWSKKHELTNNFDVD-EATYREFQAFVAARDKEGDINLDALYKRPLDDLKKSLDQSGFKGSRKELDALRASIIRDIQRDYDTYKKDIKEDIGNSILARYLPESMLIERSIKTDRQVLAAAELVGPKEVKK 836
[Close]
BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: A0A7S1B4F4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4F4_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.070e-36
Identity = 85/225 (37.78%), Postives = 127/225 (56.44%), Query Frame = 1 
Query:    1 YTYTFRCIQSVNYKEGGVAKGDQPATVGVGGSSYGYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFKGIADMTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNYDKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRDKEMYKRII 675
            YT + RCIQS NY EGG          G       + A++V E ++ E+ T+ GR V DGGG+EADVKV  PK SALE+ L   + +  YAGEWT++H  +    +  D   +DF+NFV + Q +G+  L ++Y   L+ L   L+ S  +   K ++ L   + +EM   F + K+ I+  L  AILSRYLP SM+L ++L TD Q  A  +L+ +   + +I+
Sbjct:  386 YTPSGRCIQSTNYAEGG----------GSDAKDGKFVATKVEEKDKTEYFTRAGRRVQDGGGIEADVKVPTPKASALEVTLLRSDMFNRYAGEWTKTHKLRDNFAVN-DETYRDFQNFVTQTQRDGRVRLESLYLGPLEVLKKELQQSGYTTSKKELEALQNNIVREMERDFVAYKKDIKEDLSTAILSRYLPSSMLLDRSLRTDVQVTAAYKLISNPSKFNKIL 599
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BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: A0A0G4F0N3_VITBC (PDZ domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0N3_VITBC)

HSP 1 Score: 145 bits (365), Expect = 8.090e-36
Identity = 92/269 (34.20%), Postives = 138/269 (51.30%), Query Frame = 1 
Query:    1 YTYTFRCIQSVNYKEGGVAKGDQPATVG--------------VGG------------------SSYGYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFKGIADMTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNY------DKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRDKEMYKRIITPADAK 693
            YT + RCIQSV Y EGGV   D   T                + G                  S   Y + E+ E ERK F T+ GR V DGGG+EADVKV LPK S LEI L  Q A FDYA EW++ + ++G  D   D +   F+ +VL+R   GK  L  +Y  QL+ L ++L+  + S+       +K I+ L + L +E+   F    ++++  L +AI  RYLP+++ L + L  DP     ++L+++ + Y+ ++TP  A+
Sbjct:  620 YTPSGRCIQSVKYSEGGVNMADASTTTPNEDTQGTPTAPQETINGPSTTDPQSRRNGRRKTDDSDLRYLSDEISESERKVFKTRGGRYVRDGGGIEADVKVNLPKTSPLEITLISQGAMFDYAAEWSKFNEYRGEIDSQIDDIYDAFQGWVLERVKSGKIKLDTLYASQLNDLGTLLKELDRSDQSYTKAVEKGIQQLREDLAKEIKNDFVRNAKELKLDLADAIKQRYLPDTLRLSQNLQYDPMVATAIKLLQNNDQYQAVLTPRTAQ 888
[Close]
BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: A0A0G4EX77_VITBC (PDZ domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX77_VITBC)

HSP 1 Score: 144 bits (364), Expect = 8.760e-36
Identity = 91/269 (33.83%), Postives = 136/269 (50.56%), Query Frame = 1 
Query:    1 YTYTFRCIQSVNYKEGGVAKGDQPATVG--------------------------------VGGSSYGYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFKGIADMTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNY------DKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRDKEMYKRIITPADAK 693
            YT + RCIQSV Y EGGV   D   T                                     S   Y + E+ E ERK F T+ GR V DGGG+EADVKV LPK S LEI L  Q A FDYA EW++ + ++G  D   D +   F+ +VL+R   GK  L  +Y  QL+ L ++L+  + S+       +K I+ L + L +E+   F    ++++  L +AI  RYLP+++ L + L  DP     ++L+++ + Y+ ++TP  A+
Sbjct:  404 YTPSGRCIQSVKYSEGGVNMADASTTTPNEDTQGTPTAPQENNNGPSTTDPQSRRNGRRKADDSDLRYLSDEISESERKVFKTRGGRYVRDGGGIEADVKVNLPKTSPLEITLISQGAMFDYAAEWSKFNEYRGEIDSQIDDIYDAFQGWVLERVKSGKIKLDTLYASQLNDLGTLLKELDRSDQSYTKAVEKGIQQLREDLAKEIKNDFVRNAKELKLDLADAIKQRYLPDTLRLSQNLQYDPMVATAIKLLQNNDQYQAVLTPRAAQ 672
[Close]
BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: A0A1E7FC68_9STRA (Peptidase_S41-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FC68_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.050e-35
Identity = 79/225 (35.11%), Postives = 131/225 (58.22%), Query Frame = 1 
Query:    1 YTYTFRCIQSVNYKEGGVAKGDQPATVGVGGSSYGYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFKGIADMTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNYDKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRDKEMYKRII 675
            YT + RCIQSVNYKEGG          G+   +  Y++S VP+ +R+ F TK GR V DGGGVEAD KV  PK SALE+ L   +   ++A +W++ +      ++T D + ++F++FV  +   G   L A+Y   LD L   L  S   + ++ +  L  ++ +E    F+  K++I+  +  +ILSRY+PESM+++++L TD Q    ++L+ + + + +I+
Sbjct:  317 YTPSGRCIQSVNYKEGG----------GLDEQNGRYQSSTVPKKDRQVFFTKSGRTVRDGGGVEADYKVAAPKASALEVTLLRSDIMNEFASQWSQKYELTNNFEVTDD-IYREFQDFVEVKVKGGDLKLEALYAGALDDLKRALSQSGYKSSEREVDQLKTQIVKESKNDFEKYKKEIKEDIATSILSRYIPESMLMKRSLKTDDQVQEAIKLLANDKSFSKIL 530
[Close]
BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Match: A0A4D9CU61_9STRA (TSPc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU61_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.170e-35
Identity = 80/213 (37.56%), Postives = 127/213 (59.62%), Query Frame = 1 
Query:   40 KEGGVAKGD---QPATVGVGGSSYGYEASEVPEIERKEFITKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSFK---GIADMT---TDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNLSNYDKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRKALDTDPQFLAGLELVRD 651
            +EGG  K     Q   +G G    GY A+++PE ER+ F T HGRVV DGGGVEAD+KV  P+ S LE++LQ Q  +FD+A EW+  H++    G+ + T   TD   ++F ++V +++ EG  +   ++   L+ L + L+A+      K +  L   + +E+   F +R+ QI+  +E+AIL+RY PES++ R AL+ DPQ    +E V++
Sbjct:  408 EEGGAGKAKDSLQKRRIGPGREK-GYLANDIPESERQTFYTTHGRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPGAGVQEETPLVTDATYQEFVDYVGRKEKEGSVSYDVLFNGALEPLRTALDATEYKKAGKGLDDLKAAVREEVSREFQTRRAQIKEEVEQAILARYQPESLLRRLALEGDPQVKVAVEAVKE 619
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7203.15183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L981_9PHAE2.840e-12577.17PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z050_9STRA4.730e-4846.04ClpP/crotonase-like domain-containing protein n=1 ... [more]
W7T550_9STRA4.810e-3936.86Carboxyl-terminal protease (Fragment) n=1 Tax=Nann... [more]
I2CP28_NANGC5.000e-3936.82Carboxyl-terminal protease (Fragment) n=1 Tax=Nann... [more]
A0A7S4IQW6_9STRA4.810e-3737.39Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1B4F4_9STRA4.070e-3637.78Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A0G4F0N3_VITBC8.090e-3634.20PDZ domain-containing protein n=3 Tax=Vitrella bra... [more]
A0A0G4EX77_VITBC8.760e-3633.83PDZ domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A1E7FC68_9STRA1.050e-3535.11Peptidase_S41-domain-containing protein n=1 Tax=Fr... [more]
A0A4D9CU61_9STRA1.170e-3537.56TSPc domain-containing protein n=1 Tax=Nannochloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7203contigH-paniculata_contig7203:711..9049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.9
Seed ortholog evalue1.2e-103
Seed eggNOG ortholog2880.D7FJW2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase family S41
EggNOG OGs2RW0A@2759,COG0793@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size762
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7203.15183.1prot_H-paniculata_contig7203.15183.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7203 711..9049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.3119822-CDS-H-paniculata_contig7203:710..8661622930877.3119822-CDS-H-paniculata_contig7203:710..866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 711..866 +
1691481492.7857618-CDS-H-paniculata_contig7203:710..8661691481492.7857618-CDS-H-paniculata_contig7203:710..866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 711..866 +
1622930877.3315058-CDS-H-paniculata_contig7203:1539..16291622930877.3315058-CDS-H-paniculata_contig7203:1539..1629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 1540..1629 +
1691481492.8040528-CDS-H-paniculata_contig7203:1539..16291691481492.8040528-CDS-H-paniculata_contig7203:1539..1629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 1540..1629 +
1622930877.3482375-CDS-H-paniculata_contig7203:2840..29691622930877.3482375-CDS-H-paniculata_contig7203:2840..2969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 2841..2969 +
1691481492.8134282-CDS-H-paniculata_contig7203:2840..29691691481492.8134282-CDS-H-paniculata_contig7203:2840..2969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 2841..2969 +
1622930877.3630497-CDS-H-paniculata_contig7203:4706..49001622930877.3630497-CDS-H-paniculata_contig7203:4706..4900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 4707..4900 +
1691481492.8228192-CDS-H-paniculata_contig7203:4706..49001691481492.8228192-CDS-H-paniculata_contig7203:4706..4900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 4707..4900 +
1622930877.3783236-CDS-H-paniculata_contig7203:5445..55691622930877.3783236-CDS-H-paniculata_contig7203:5445..5569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 5446..5569 +
1691481492.832603-CDS-H-paniculata_contig7203:5445..55691691481492.832603-CDS-H-paniculata_contig7203:5445..5569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 5446..5569 +
1622930877.3956373-CDS-H-paniculata_contig7203:8980..90491622930877.3956373-CDS-H-paniculata_contig7203:8980..9049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 8981..9049 +
1691481492.8425906-CDS-H-paniculata_contig7203:8980..90491691481492.8425906-CDS-H-paniculata_contig7203:8980..9049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7203 8981..9049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7203.15183.1

>prot_H-paniculata_contig7203.15183.1 ID=prot_H-paniculata_contig7203.15183.1|Name=mRNA_H-paniculata_contig7203.15183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp
YTYTFRCIQSVNYKEGGVAKGDQPATVGVGGSSYGYEASEVPEIERKEFI
TKHGRVVFDGGGVEADVKVKLPKPSALEIALQVQNAYFDYAGEWTRSHSF
KGIADMTTDGMLKDFKNFVLKRQNEGKYNLAAIYGPQLDSLDSVLEASNL
SNYDKLIKPLGKRLTQEMLPAFDSRKEQIRSALEEAILSRYLPESMVLRK
ALDTDPQFLAGLELVRDKEMYKRIITPADAKLTEDVLRSFGQALKDSVQT
GDLR
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mRNA from alignment at H-paniculata_contig7203:711..9049+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7203.15183.1 ID=mRNA_H-paniculata_contig7203.15183.1|Name=mRNA_H-paniculata_contig7203.15183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8339bp|location=Sequence derived from alignment at H-paniculata_contig7203:711..9049+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATACATATACATTCAGGTGCATACAAAGTGTTAACTACAAGGAGGGTGG
AGTAGCGAAGGGGGATCAGCCGGCAACAGTTGGCGTCGGAGGAAGCAGCT
ACGGGTACGAAGCTAGTGAGGTGCCGGAGATAGAGCGAAAGGAGTTCATC
ACCAAGGTGTGTATGTGTGTATGTGTGTATGTATGTAGGTAGGCATCTAT
CTATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATCTATCTATGGAATGTTGGTGTTGGTGTTGG
TTTGTGGCATACGGCAACAAGCCTACTCCCCCATAAATTGGCGATGGTGA
CCATACCTCCGTTTTGTGTTACGGTTTTTCTCATATTTTCATAGAGTTGA
GATCGTAAGCTTTTCATAGAGTAAACCGTATACTCGTAAGTGTCGATGCC
ATCCTGTTGATAATGCTGTCCTTGGCAAGTTGACACGTTTGATGATGTCG
CTATGTAGTAGTTGGTGCTAGAGTTCTTTTTAGTCGTCTGTTACTATTAG
TTGTTATGTCACTATACTGCTTGTTGCTGCTATCACTTATCATGTGCATA
TTACGTAGATTTTTTTATGAGGCACGAACATCTCACACAGGCCAAGATCA
ATCTACATTATTTTCATTACCTGCACGTGAAAGTGGCAGAGTGTGAACGA
CCCCACCCCCCCTCCCCTGCGCGTATCCTACCCACCCGCCATATACGTAT
ATATATATACATTTCATACGTGAATATAGCACGGTCGAGTGGTGTTCGAC
GGTGGAGGTGTGGAGGCTGATGTGAAGGTCAAGCTTCCTAAACCATCGGC
GCTAGAGATCGCCTTACAGGTGAGGGATGGGCAGGGGGCAGGGGGGGAGT
TACTCGTGTTTCACATGTCGTAGTTTGACGATGGACCACGCATGCAGTCC
TCGATAAAACGGAGCTTTGTTCCTATCAGAGCGGTTTCCAATGGATAATG
ACCAATACCCTTTTCCTACGTTGCCAGAAGTGTCTCAAAAATGTTTTACC
CCCTTTATGTGGCGGGGGTGGTTTGCTAATGACAAGCAGGGGGAGGTGAA
GTTGCTGGATTACTTGCCTACAAACTGAAGATATTTATGGAAGGCATCCC
TACAGGGAGTTCCAAACGTTTTGTGTTGTGATTGATCTATTTGTCGCAAA
GGGCTTCGCTGTTTTTATGGTGAGCGATGAGGAAAAGTCGAGGATGGAAA
TTGAAAATGATATTTCGTGCTTGTTCGGTATTCACTTCGTTGGAAAAAAA
CTCAACCCCCCCCCCCAAAAAACCCCAACAAAATGTGTATCTCCATCCTG
TTACTCTTGATCTATTCTCACGGAGATAGATACACATGAATGATAAATAC
TTTGTATACATATATACATACATTTCTGTATGTACTTGGTTGTTGCCATG
TTAAACAGGAGGGTTTTATGATTTTGTGTGCATCGTATTTCCGGTTTTTT
GTTTTATATATTTATTTGTGTAAATTCAATAGACGTACGTGTATGTATAT
ATATATATATGTATCAAGGGACCCGCAGGATCCATATTGCTCACCCCCCA
CCCAACCCCGTTTTCAATGTGGCCAACAGATAGTTGGAAATGACTCCATT
TCGCCAATTTTGGACGCAGATTTCTAATCTGGAACTTAGTTTGGAAATAG
GATATACTCTTCATGCTTATGCTTTTATGCCAATATGGTTTATGTGTATA
CACTATGCCAATATGTAATAATTTTCGGCTTCACGAATACCTTCAAATGG
TTTTCACAATAAACTGGAAATATTTACCCGAGTTTCGAAGTGAGCTCGAG
TATTCTAGTATTCTCTGTGCAGACCATCCGCGATTGCTGATAATATTCGT
AAATGGAATGGGCAGGGGTGAATAATTTATTTTGTCTGTCCTTCTTTGCT
CGTCACATTCAAATGATTGGTTTTGCTTTTATGCCAATATGTCATATCTC
TTTCTCACGGCATTGTTTCTTTTTTATCTCTTCCTTGTGTCTTTTTTGGC
GGCGGCGGCGACCGGGGGGGGGGGTGATAGGTTCAAAATGCTTATTTTGA
CTATGCTGGCGAGTGGACTCGATCACACTCATTCAAGGGAATCGCTGATA
TGACGACGGATGGGATGCTTAAGGACTTTAAGAATTTCGTCTTGAAACGT
CAAAATGAGGTGGGTAATTTGTCTCTCTTGTACAATAATCATGTCGTTTA
TTGGTGAGATTTTCAACTGGGGTATGTATGTAGATCTGATGCGTAGCATG
GTCTATTAGCTCATGTGTTCAAGGCATGAGAATACGTGCTCATACTTTAG
GTCTTGGTGGCTGTGGCCAACATCGACAGGCTTGAGGTACGTGCTGCACG
AGCTCAGGATGATGGCTATTATACATGCGTGCTGAAAGTTCTACGGTAGG
GTACCCTATGTAAGGTATTGCAGTGAAAAAGGTACCTTGAATTTGCTGAC
ACTTGTTTTGTTGGTATTAGGGTTTAGTATGTGGACCCGTATTTGAAGAA
GGTATAGAGTATGATGTACTTGTAGTAAAAAAAATGTACCTTTTTTCCGC
TGCTACTATTTGCGGTATGTACGTATAGATAGGGCCACCTGCTGTTTCGA
CAATCTAAATCAATAGAAAGCCATACAGGGTACCAGCGTACAATATCGTT
GAGGACACACGGGTACACCCCCGCTCTCTGGAGGATACGTAGCCACTGGT
TTCACTACTAATGCGTTGCGCAAGACATGACTACACCATCGAGTGTTTTT
TGTTTTTTTTTAACCCCCGGAAGGCTGAGGCAAGAACCTTTACCACTGCT
TCCATACTCAGGTGTTTACCAAAGTATGTCTACATTTCCTTTTACAGAAC
AGAGTTATTTATTCCTCTTTGGGGTAGGCGCCACCCCGGTTCGGCCGAAC
CAAGTAGGTAGTGTAGGCGTTTCACCCACTAAAAGACCTCTGACTAGACT
TCCAGTCATGCTTAGTACACGAGCTACCCTACCCGTTCGGGCGTAGGTCC
GTGGACCATAGTGAGTTGTCGACATTTCAACCCTCGGAGAAAAAAAACAA
AAAAACTTTACGTATTTTGCGTGGAAAATTAAAAACGTATTCGCCTGAGT
TTCAGAAATGAGCGGGCACATAGAATGAAGTACATAGAATACGCCTGTCA
TTTAGATTTACAAGTATTATTAGCAGTCGTGGATGGTCCGGGGTACATCG
AATACACGAGTTCATTCTGAAACTTGGGCGAATACGCCAATTATTCGTAC
GTGTCCGGGGAATGTGTGCACCTCTAGTCGAAAAGAGTACCTCCTCCCCT
GGTTGATGAGTGTACCTCCCCTAGTTGGTAAGCGTACCTCTCCTAGTTGA
TGAATGTACCTCAACTTTTAGTCAACGAGTGTACCTCTCCTAGTTGGTAA
GCGCACCTCCCCTAATTGATGACTATACCTTCCCTAGCTGATTACTATAC
CTCCCTCAGTTGATTACTATACCTCCCCCAGTTGATAAATATACTTCGAT
TAGTCAATGTGTGTACCTCCCCTAGAGGACAAGTGTACCTTCCCTAGTTG
ATGAGTAGACCTCCCTCAGTTAATAAATGCACCTCAACTAGTCAACGAGT
GTACCTCCCTCAGTTGATAAATGTACCTCAATTAGTCAATTTGTGTCTCC
CCTAGATGCCAAGTGTACTTCCCCTCATTGATGCGTATACTTCCCCTAGT
TGATGAATGTACCTCAACTAGTCAATGAGTGTACCCCCCCTAGATGACAA
GTGTACCTCCCCTCGTTGATGAGTGTACTTCCCTATGTTGATAAGTCCAC
CTTACCCTAGCTGATAAATGTACCTCCCCTAGTTGATACATATGCCCTCC
CCTGCCCATCCCTATGTGGTGCGGCGTTGCCCACTACTACGAGCAGGGCA
AGTACAATCTAGCGGCAATATATGGGCCACAGCTGGATTCGCTGGACTCG
GTGTTGGAAGCGTCTAACCTCAGCAACTATGACAAGTTGATCAAGCCTCT
GGGAAAGAGATTGACACAGGAGATGCTTCCGGCCTTCGACTCGCGTAAAG
AACAGATTAGATCTGCGCTGGAGGAGGCGATTCTCTCCAGGTGAAGTGCC
TTTTTTCTTTTTCTTTTTTAAAACCTCGTCAAACACATTTTTTTTCTTCA
TGGATTATATGTTGGATTATATGTGCCAAATATCAACCGGGCAATGACCG
GCTTTTCGAGGGCGTACTACGGTGTTGCTGAGAGCACAAGCGCAAGCAGA
CAGCACGTATAGAAGCTTATCTCACGCACAGGCTATTTTTCATAACGCAC
TCCCATCCAACCCCCCCCATCCCTTTTTTATTCAATTTGTGGATAATGAC
CAAGTCATCCAACAGCTTAAAGGTGATGCTGTGTATATCTTCTTTTTTGT
ATTGCGACTATTGTCAGTTGAGGAATATCTGCTTTTGTTTTTGCCTCTTG
TTGCTCTCTATTATTATTTTGTACTTGTTTTTTTCCAAATCGCATTCTCA
TAGTGCAGATGCCGTCCTCCTGCCCCCCCCCCACTCTTTCCCGTATCCCC
CCTAACCTGTCGATCCTTTGTTCGTTCAATCTGTAATATTCATTTCATGT
TATTGATGTACCGAATCTCTCTTGAACAACCCAAGGTATCTGCCCGAGAG
CATGGTGTTGAGGAAAGCCCTGGACACCGATCCGCAATTTCTGGCGGGTT
TGGAGTTAGTGCGAGATAAGGAGATGTACAAGCGGATCATCACTCCGGCG
GACGCGAAGGTACTGTGCATGTTATAAATTTTGTTATATGTTTGATGGTA
TTTTGTCCTTCACGGGCGTTGGGTAACAATCACCTCTTTTATGGTGTTGC
CGAAGGTGGCCATCACTTGACCCTCTCGTAGCAGAAAAACAGCCAAGCTT
TTCACAACAAAAGCGAAAGTTGTTCATCTCTTGTTTTTTCGAACTTGCCT
AGTTAGCTGCTATCATATGGAGCAGGGCGTAGTATTGTTCTTTTTTTTTT
ATCACCAGGACATTGCACTATTTAGTTTGTGGTTATCGTTATTGTTACTA
CTATTTTTATTATTCACACATTAGCCCGATCCATCAGACCCGTCGGCACA
GGGTAAATGGCGATTCGGTGGAACTGCGTTAGTATAACGCCACAAGATTA
GCAACAAAAACGAACACGGGCCTAAAAACAGGGAAAGCAACGCAGAAGAG
GTAAACAAACGCACGAAACAATAGGAACGGTAGACCGAGGAAAATCAAAA
GCCAAAGACAACGCAAGAGACACGCGCGCCAAGGTCACACCGTGCATCTG
GGTGGGTCGTCTGCAAAGAAATGGAACAAGGCAAAGTACTCTCGCGCGTG
CCGGGCGCGAGTCTTGGCTACATCTACTGCGTTTCATGCACGCAATGAAC
GAGCGACTCCTTCGTCCACAATACCGTACCAGTGGGCGGCACCGACATTT
GCATGCGCCACCTACATTGTTGTGATCTGGATCCCAAAGTCGTTGGCATC
GTTGATGACACACTGTGGCCACCGCCTCGCAGGCCAGCCCCTACCTCTTT
TTGTTATTTCGTCAAGTTCCCCAGTCATCATGACCTTCGGCAGGCATTTG
TCCTTCATGCGCAATACGTTCCTCGCGAACCGATGTCACCGGTTCTTCGC
GTTCCTCTCGATGCTCTCATACCCAGTCCTCTCCAGTGTGGCTCGGTAGG
ACAGAACGTGATTTTAGGGGCCTCCTTATTGTAGACGCGGATTCATCACA
GTAGGAGGCCACGGTAGTACTCCCTCAACAACTTGGCATAGTGCGAGGCG
AGGAGTGTCCACGTGGAGCAGCCGTACAGCAGGACCTCGATCATGTTTTC
GTCTTTAATATGCGAATGTTGGAGTCTTGAAGTCGCACTTTAAGGCAGCT
GTAGACTTGGCGTCGCTACTTGTTGAAGCACACATGGGCCAATCCATCTC
GTCTCATGATCTCCACCACCATCGTGTGGCAGGTGTTGTGAACAGTATCC
CCGAGGTAGACAAACTATTCAATTTGCTTGTACCTCTGACCTGCCACTTC
GATGGTGAGGACTTCAGCTTCGCCTTTCAGCTCGCGCAGGTGCACAGTCT
CCGTCTTCGACATTACGATGATGGCCGTTGTTTTGGCTAGACTTTGCGGG
GATCGCGAGGCTCGCAGGATGGTTCACATCATCACCGTCGCCCCGGTGGT
GAACCCCATCTGGTTGACACGCACGAAATCACCACGCACCACATCGTCGG
CGTTGTGTCGCTTGTAAAACAGCCGACATCACCGTCTCGGAGTAGATAAA
GCATAAGCTGGGCCAGCACACATCTCCGACGGAGGCCCTGGTCGACGGAG
AACCAATCCGAACACTCGCCGTTGTCCAGGCGGACACGGGCTCTCTTGTG
CCATGATAGAACTAGCGAATAGATAATCGACAACAGCTTGCGCAGTACAC
CAAAGCGTCTCGGCACTTGTCAGAGAATAGTGCGGTCTACTAACTAAGTC
AATGAAGCAAGCATATGGAGAGTGGCGTCTTCTTGTCCCGGGCGAGTTTC
TGTAGCCTGCGCATGAATATTATGTCGGTGATCGATCGTCCAGGATCGCA
GCCACGGTGTTGTTCCTCAGGGAGTAGCCCGTTTTTCTCGCAGTAGTAAT
TTCTGAGGCGGCGAGCGACCACTGTAAGCTTGATCACCGCATCCTTCCAC
GCCTGCAGTACCTCCTCTTACCGCCACACGCGGGTCACATTGTGTTGGAA
GGATTGCACGTTGGCGGGCTCCTCACGCACACCGAGCTTGGGGAACTCAG
CGGGGAGGTCATCCGGTCCAACTTCTTTCTCATGTATATATATATATATA
TATATATATATATGTATAACGTACATCCACGATTAAAAAAAAAATGCGGT
TGCACGGCGCGTTGAAAGACTTTTTTGAGTCAGTTGGTTGAGATCGTCCG
CTGGTACGTCGTCCCCTGGAGTGTTTCGGACATGTTGTCGTGGGGTGCAC
TCTGTTGTTGTTGTTGTCGTGAGAATGGAAAATGACAGAATATGACGTCC
GCCGCGCCAGCAGCCTGAAGTATTTTGAGAGGGTTTGATGTACATACATA
TATGCCCTTCGTGGGGTACGAATTTGGGCGATCCAGTGCTCCCTCTTGCG
TGCATTGGTGACAATGCTTTGATTTGGCCATCGGAAATACCACAGTAGCA
GCAGGGGAGCAGTAGCACCTGAGACAGTCATCCGTACACGTTCATAATAT
ATGGTTCTTGCTCTTGTGTTCGAGTAGTAGAAGAACAGTAGCAGCAGATG
AAAAAGTCAACCGTTCACGTCCAATCTACACTGTGTACTGGTGCTTACGT
TCCCCAGGTACCCACTTCGCTGTTTCATTTTTTTTTTTTTTTTTTTAAAT
CTTGGACAGGGTAAATCGAGTTGCAAATGGACCGGAAGAAATTTATTTCA
TGCGGCACACCAGAGTCAAAAGCCCAAATTGTTTGGAACACCATGTTGCA
CCCTCTCGAGCGCAGTTGTTGGTGTGTAGTAGATGAGGATTAGATACGGC
TTGTTCATGCAAAGATGTTCCACCAAAGTGCCCTCCATCTCTCGCAATGA
TCGTAGCCAGGCGCCAAGCTAGATTTTGTACCAGAGGGCTGGATAGCCCA
GCACACAATGGTGCTATGAAACTCCCTCTTTCGTTGGAGAGAAATCTGAG
CGGATGGAATGAGGGAAAATCGATGGGTGCGATAGAGAGGCAAGGGTTGA
GGTAGATGGGTTACGTTAAACAGTTTTGAGCCCCATTTGGCAACGCAGGA
AAAAAGCGATTTGTCATTATCCATCGGGAATTGCTCTGATGGGAACAAAG
CACCGTCCTTCCGAGGATGCGTGCTCAATGGCCAAAACAGCTGTGGCATC
AAAAGCGTAAGTTCACGCCCCCCTCCCCCGAGTGTATTCAATCGGATTTT
ATGAATACGCGAGTAATTCGGTAGCTGGAAGATGAATGCTGAGCTTACAC
ACCTCTGTCTTGTTTTTTTCCATATTAGGTTGAATATATATATATATGTT
TTTCATGTCTTTGATCATTTGATTTGTTTTTTGCTTTACGGCACTTTTAG
TCCTCAAACCAAAAATAATAACGTGAGTACTCCCCCCCCGCCTACCCCGC
GCCCACGATTCGCCGTACAGCTGACTGAAGATGTCCTCCGATCGTTCGGG
CAAGCATTAAAGGACTCGGTTCAAACGGGGGATCTACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7203:711..9049+

>mRNA_H-paniculata_contig7203.15183.1 ID=mRNA_H-paniculata_contig7203.15183.1|Name=mRNA_H-paniculata_contig7203.15183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig7203:711..9049+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATACATATACATTCAGGTGCATACAAAGTGTTAACTACAAGGAGGGTGG
AGTAGCGAAGGGGGATCAGCCGGCAACAGTTGGCGTCGGAGGAAGCAGCT
ACGGGTACGAAGCTAGTGAGGTGCCGGAGATAGAGCGAAAGGAGTTCATC
ACCAAGTATACATATACATTCAGGTGCATACAAAGTGTTAACTACAAGGA
GGGTGGAGTAGCGAAGGGGGATCAGCCGGCAACAGTTGGCGTCGGAGGAA
GCAGCTACGGGTACGAAGCTAGTGAGGTGCCGGAGATAGAGCGAAAGGAG
TTCATCACCAAGCACGGTCGAGTGGTGTTCGACGGTGGAGGTGTGGAGGC
TGATGTGAAGGTCAAGCTTCCTAAACCATCGGCGCTAGAGATCGCCTTAC
AGCACGGTCGAGTGGTGTTCGACGGTGGAGGTGTGGAGGCTGATGTGAAG
GTCAAGCTTCCTAAACCATCGGCGCTAGAGATCGCCTTACAGGTTCAAAA
TGCTTATTTTGACTATGCTGGCGAGTGGACTCGATCACACTCATTCAAGG
GAATCGCTGATATGACGACGGATGGGATGCTTAAGGACTTTAAGAATTTC
GTCTTGAAACGTCAAAATGAGGTTCAAAATGCTTATTTTGACTATGCTGG
CGAGTGGACTCGATCACACTCATTCAAGGGAATCGCTGATATGACGACGG
ATGGGATGCTTAAGGACTTTAAGAATTTCGTCTTGAAACGTCAAAATGAG
GGCAAGTACAATCTAGCGGCAATATATGGGCCACAGCTGGATTCGCTGGA
CTCGGTGTTGGAAGCGTCTAACCTCAGCAACTATGACAAGTTGATCAAGC
CTCTGGGAAAGAGATTGACACAGGAGATGCTTCCGGCCTTCGACTCGCGT
AAAGAACAGATTAGATCTGCGCTGGAGGAGGCGATTCTCTCCAGGGCAAG
TACAATCTAGCGGCAATATATGGGCCACAGCTGGATTCGCTGGACTCGGT
GTTGGAAGCGTCTAACCTCAGCAACTATGACAAGTTGATCAAGCCTCTGG
GAAAGAGATTGACACAGGAGATGCTTCCGGCCTTCGACTCGCGTAAAGAA
CAGATTAGATCTGCGCTGGAGGAGGCGATTCTCTCCAGGTATCTGCCCGA
GAGCATGGTGTTGAGGAAAGCCCTGGACACCGATCCGCAATTTCTGGCGG
GTTTGGAGTTAGTGCGAGATAAGGAGATGTACAAGCGGATCATCACTCCG
GCGGACGCGAAGGTATCTGCCCGAGAGCATGGTGTTGAGGAAAGCCCTGG
ACACCGATCCGCAATTTCTGGCGGGTTTGGAGTTAGTGCGAGATAAGGAG
ATGTACAAGCGGATCATCACTCCGGCGGACGCGAAGCTGACTGAAGATGT
CCTCCGATCGTTCGGGCAAGCATTAAAGGACTCGGTTCAAACGGGGGATC
TACGACTGACTGAAGATGTCCTCCGATCGTTCGGGCAAGCATTAAAGGAC
TCGGTTCAAACGGGGGATCTACGA
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