mRNA_H-paniculata_contig7197.15173.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7197.15173.1
Unique NamemRNA_H-paniculata_contig7197.15173.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7197.15173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7197contigH-paniculata_contig7197:8228..10818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size519
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7197.15173.1prot_H-paniculata_contig7197.15173.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7197 8237..10347 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930874.253726-UTR-H-paniculata_contig7197:8227..82361622930874.253726-UTR-H-paniculata_contig7197:8227..8236Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7197 8228..8236 -
1691481491.1956296-UTR-H-paniculata_contig7197:8227..82361691481491.1956296-UTR-H-paniculata_contig7197:8227..8236Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7197 8228..8236 -
1622930874.31103-UTR-H-paniculata_contig7197:10347..104721622930874.31103-UTR-H-paniculata_contig7197:10347..10472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7197 10348..10472 -
1691481491.2291942-UTR-H-paniculata_contig7197:10347..104721691481491.2291942-UTR-H-paniculata_contig7197:10347..10472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7197 10348..10472 -
1622930874.3348713-UTR-H-paniculata_contig7197:10727..108181622930874.3348713-UTR-H-paniculata_contig7197:10727..10818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7197 10728..10818 -
1691481491.2376463-UTR-H-paniculata_contig7197:10727..108181691481491.2376463-UTR-H-paniculata_contig7197:10727..10818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7197 10728..10818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930874.269134-CDS-H-paniculata_contig7197:8236..84511622930874.269134-CDS-H-paniculata_contig7197:8236..8451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7197 8237..8451 -
1691481491.206746-CDS-H-paniculata_contig7197:8236..84511691481491.206746-CDS-H-paniculata_contig7197:8236..8451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7197 8237..8451 -
1622930874.2933772-CDS-H-paniculata_contig7197:10268..103471622930874.2933772-CDS-H-paniculata_contig7197:10268..10347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7197 10269..10347 -
1691481491.220771-CDS-H-paniculata_contig7197:10268..103471691481491.220771-CDS-H-paniculata_contig7197:10268..10347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7197 10269..10347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7197.15173.1

>prot_H-paniculata_contig7197.15173.1 ID=prot_H-paniculata_contig7197.15173.1|Name=mRNA_H-paniculata_contig7197.15173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MLYGALQLVALSRTAAALSTIDPFTEAGMRERTENGVTFYVALVGAMIGL
LLGMNLLTFYCRPWNKTLSTVGTNVRADGAQRLRAAVDMREETAFLA*
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mRNA from alignment at H-paniculata_contig7197:8228..10818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7197.15173.1 ID=mRNA_H-paniculata_contig7197.15173.1|Name=mRNA_H-paniculata_contig7197.15173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2591bp|location=Sequence derived from alignment at H-paniculata_contig7197:8228..10818- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTACCAGTGCAGCGATAAACAGGACGACGCTAAGGGCGACGAAACACA
ACCTTTTGAACCTGACAACCGGGATCGATTCTGCAAAGCCTGTAAGTACA
CGGTATAATGGTATATTTGCTTATCGGGTTGACCGTTGTTGCGTGACTTT
ATTGTATTGAAATTGGGTGTTTAATTGGTGTTGTATGGTTGGCGTTTCGT
TACCTTTTTTTTTTTTTTTAACTCCCGGAAGGCTGAGGTCAAAACCTTTT
CCGCTGCTTCCACACGTTTCGTTACCTTCCCCTGCGTGTAGCGTTAGCTC
ATTTAACCGCCGTTGTACTTGCCTACGATTTCTTTGTGTTGGGCAGTCTC
GGGCTTCACTGCAACACAGATCTTTGCCACTGTCACATGCGAGCTGGCTG
CTGGCCTCTTGTTTATCGCGGTCAAGCGTCGGAAAGGTGGTGAAGACGCG
TTGTGGAGTGGGGCTTGTTTCATGTTGTATGGTGCACTCCAGCTTGTTGC
TCTTAGCCGCACCGCCGCCGCATTGAGCACTATTGATCCGTTCACGGAAG
GTGCGTGCTCTGTTAGAAGTTCTCAACCACTCGCGCTCAGGATGCCATGT
CCAAGGCCCTCAGCCTTTGTTCTACAGCTTCACTAGATACTCCTATAACA
AAACTTACGTTCGCATCAGAGCCACACAGGATTGACCTGCTCTCAAAACA
TCACTCTGCAAGAAATTGAGGCTGGGCGTTTTTGTAAACCTTTGCCATTT
TTCTGAGGAAATTGTGCTCGAATGGTGGACCTGAAGTAATTACTGCACAT
TAACCGCAGGAAACTCATATTCGGGTGAGGTAAACAAGAAGACGTTGAGC
CTCACACAAAAAATATGGGTTTCTTGAAAACGGTCCGATGATGTACCCCG
CTGTTCCACGATAGAAAGCTTTGAATGGCTTGATGCACGAGGTGGAATGT
CGCCGTGATGGAATGCGAGGCATAGTAAGAGGTGTGTCCCGACGCTGCGG
TGTACTGAGAATGTTCTTTCGCGCCAATGGGAAATGATGCCGGGAAAGAG
GCGATTATCCAATTCGTGGAGCCGAGAACGCGGAATCTCCGGCACAACGC
GTCCTAGGACAATGTGGCGACGCTTGCAATATCAGTAGAACGTTTCCCTA
TGCTATTCAGGCGTTAATCGCTTGACTGAATATTTCCCTGAGTGCGCTCT
AGCATGTAATGCAAACTGAATGCAAACTGAACGTCACTTGGGTTAGGTTA
ACTATAGTAATATAATCGCATCGCTGCTCAGGCAGGCTCCAGAAGAGTGC
TCTCTTTGCGATCGTAGCGATGAGGACGCATGCCGCCTTTTCATCTGTCA
TACTGTGCCTCGAGGTATCAGGGTTTTCATCGGGCGTACTCTGTCAACCG
ACAGAAACCAATAAAATCTAGCTTCCATTTCAACATCGGTGTGTTCGAGG
CGATCAAATAGACCAAAAGGGAACCCCCACACTGTAGTTTCGTTATTCGT
TGCAAGGCTGATTGACCTTCAGATGAACACACCCTTAACACGATAATGCA
CACAACACCTAGTGGGGCACCACTCACTGTATCCGACGTCTTTCTCATGG
TGAGTAAATAATCAGAAAAACATCATCGATCGGTGACGTAGCATGCTGTG
TCCAAGCGCTGAGTCGTTGCCTATCAGACACAAGAGAAGAGTTGATTACT
CGTTTTGTTGCATGGGTAATAGACAGTGTAGACAAAAAATGTCCCGTTTT
GCTGCTGTTTAGGCGCAATAGATAGGATAACTCTTTGGAAAATAAAGAAA
CATATATGAAACGATCAAGTGTGGTACATCTCAAAAGCGAGATATCCAGG
CAATACAGATGGAATCCTTACCGTCAATAAAGAGACATATATATATATAA
GCCATTGGCATCGGCATCGATATCCTCGATCCTGAGAGAGGTCACACGAG
GTTCAACATAGCAAAACCCGAGCGGACGAAACCCGAAAACGCTAGTCACG
TAGAATGGCTGACAAGAGGGTCCGGGACATCTGAACGAGCAACACCAAAT
AAATTTACACATGTCACAATATATATATTTAAAACAAATGCCACCCCACA
CCGTAGCAGCAGGTAGATCTGAAGCACAGACCGCCGCTATTACATGGCTT
CGCATGGCCATCTTGTAATGAAAACATTCACGAAGTCTGTTTATGCCTAT
TTCGAGGCGAAAACCACCTTGAGTAGCTATCCACGATGAGACCTACCAGC
CACAGTCGTGCCCCGGGAATCGGTCGGCCGGCCAAATCGTCTCTAGTCTT
CAAGTGGGACCTGACAGTAGATAGTATGCGTAAATCCCCCAAATATCATC
TTCTTCACATATTTCAGCAGGTATGCGCGAGAGGACGGAGAATGGAGTAA
CATTCTATGTTGCCCTGGTTGGCGCAATGATCGGGCTATTACTCGGCATG
AATCTTCTCACCTTCTACTGTAGACCGTGGAACAAGACTCTATCCACAGT
AGGTACCAACGTTAGAGCTGATGGCGCACAGCGATTGCGTGCCGCTGTGG
ACATGCGGGAGGAAACAGCGTTTTTGGCTTGAGAAATGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig7197:8228..10818-

>mRNA_H-paniculata_contig7197.15173.1 ID=mRNA_H-paniculata_contig7197.15173.1|Name=mRNA_H-paniculata_contig7197.15173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig7197:8228..10818- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTATGGTGCACTCCAGCTTGTTGCTCTTAGCCGCACCGCCGCCGC
ATTGAGCACTATTGATCCGTTCACGGAAGATGTTGTATGGTGCACTCCAG
CTTGTTGCTCTTAGCCGCACCGCCGCCGCATTGAGCACTATTGATCCGTT
CACGGAAGCAGGTATGCGCGAGAGGACGGAGAATGGAGTAACATTCTATG
TTGCCCTGGTTGGCGCAATGATCGGGCTATTACTCGGCATGAATCTTCTC
ACCTTCTACTGTAGACCGTGGAACAAGACTCTATCCACAGTAGGTACCAA
CGTTAGAGCTGATGGCGCACAGCGATTGCGTGCCGCTGTGGACATGCGGG
AGGAAACAGCGTTTTTGGCTTGACAGGTATGCGCGAGAGGACGGAGAATG
GAGTAACATTCTATGTTGCCCTGGTTGGCGCAATGATCGGGCTATTACTC
GGCATGAATCTTCTCACCTTCTACTGTAGACCGTGGAACAAGACTCTATC
CACAGTAGGTACCAACGTTAGAGCTGATGGCGCACAGCGATTGCGTGCCG
CTGTGGACATGCGGGAGGAAACAGCGTTTTTGGCTTGA
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