mRNA_H-paniculata_contig7195.15170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7195.15170.1
Unique NamemRNA_H-paniculata_contig7195.15170.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: D8LE98_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE98_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 7.240e-42
Identity = 82/109 (75.23%), Postives = 93/109 (85.32%), Query Frame = 1
Query:   19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
            D+YVHRSGR          VTLYA+NE+ +I +IE+GVGQGF+FERGAVPSAEQVM LAGTVAREQIKGVSDDMV +FR+SA+ELL EE SEDKELLLAKCLAAI+RKT
Sbjct:  591 DSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDDMVDFFRESAQELLAEEESEDKELLLAKCLAAIARKT 699          
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A836CKS6_9STRA (RNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.540e-26
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 1
Query:   19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISE----DKELLLAKCLAAISRKTE 348
            DTYVHRSGR          VTL+ADNE  ++ +IEK +G+GFKFER AVPSA QVM++AG VA + +  VS D+V +F  +ARELL E  ++    D E LLA+CLAAI+RKTE
Sbjct:  386 DTYVHRSGRTGRAGRLGTCVTLFADNERRDVQKIEKAIGKGFKFERAAVPSATQVMEVAGKVALKALDTVSADVVPFFTPAARELLAESQADGAELDTEQLLARCLAAIARKTE 499          
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A835ZP19_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP19_9STRA)

HSP 1 Score: 110 bits (275), Expect = 8.200e-26
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISE----DKELLLAKCLAAISRKTE 348
            DTYVHRSGR          VTLYADNE  ++ +IE+ VG+GFKFER  VPS  QVM++AGTVA + +  VS+++V +F  +A+EL+ E  +     D E LLA+CLAAI+RKTE
Sbjct:  431 DTYVHRSGRTGRAGRSGVCVTLYADNERRDMQKIERAVGKGFKFERAPVPSPAQVMEVAGTVALKSLTAVSEEVVPFFSSAAKELIAESTASEGGLDTEKLLARCLAAIARKTE 544          
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.900e-24
Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   16 ADTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKTE 348
            AD YVHRS R          VTLYA+NE+ +I  IE+ VG  F+FE  AVPS EQ+M LA  +AR+QIKGVSDD   +FR +A+ELL E+ S D ELLLAKCLA I+R T+
Sbjct:  271 ADCYVHRSDRMERAVRPGVTVTLYAENEICDIRNIEQRVG--FRFECRAVPSEEQMMALAVMLARQQIKGVSDDRAEFFRGAAQELLAEDKSADTELLLAKCLATIARMTD 379          
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A7S2KUG8_9STRA (RNA helicase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KUG8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.910e-14
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
            DTYVHRSGR          V L+  N+  +I RIE+ +G GFKFE    PS E  ++ A   +    K V+D+   +F+++AR LL    +ED    +A+CLAAISR+T
Sbjct:   93 DTYVHRSGRTGRAGAKGISVLLFQQNQARDIVRIERSLGHGFKFELLGPPSIEAALNAAAKTSAIACKTVADETAEHFKEAARALLANGDAEDT---VARCLAAISRRT 198          
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A7S2H5C4_9STRA (RNA helicase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H5C4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.310e-14
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
            DTYVHRSGR          V L+   +  +I RIE+ +G GFKFE    PS E  +  A   +    +G+ D+   +F+ +A  LLE+   ED + ++A+CLAAISR++
Sbjct:  551 DTYVHRSGRTGRAGRKGTSVLLFRPYQSRDIVRIERSLGHGFKFELAGPPSIESALSAAAKTSAIACRGIPDETANFFQDAASSLLED--GEDPQQVVARCLAAISRRS 657          
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: B8BZG6_THAPS (RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZG6_THAPS)

HSP 1 Score: 76.3 bits (186), Expect = 7.710e-14
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
            DTYVHRSGR          V L+  N+  +I RIEK +G GFKFE    PS E  ++ A   +    +GV+D+   +F+ +A  LL    S   E ++A+CLAAI+R+T
Sbjct:  332 DTYVHRSGRTGRAGASGISVLLFQQNQARDIVRIEKSLGHGFKFELLGPPSTEAALNAAAKTSALACRGVADETAAHFKDAAVSLLAS--SGSPEDVVARCLAAIARRT 438          
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A7S0CDF7_9STRA (RNA helicase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDF7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.170e-14
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEE--ISEDKELLLAKCLAAISRKT 345
            DT+VHRSGR          V L+   E  +I RIE+G+G  FKFE    PS E  ++ A   +    +GV  + V YFR +A +LLE E   +ED   ++A+CLAAIS++T
Sbjct:  281 DTFVHRSGRTGRAGKKGTSVILFGPYEARDIVRIERGLGHNFKFELVGPPSIEAALNAAAKTSAVACRGVPAETVDYFRNAASDLLETEGMTAED---IVARCLAAISKRT 388          
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A7S4ART7_9STRA (RNA helicase n=3 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ART7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.000e-13
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
            DTYVHRSGR          V +++ N+  +I RIE+ +G GF+FE    PS   V+  A   +      + D+   YF++SA  LLE   +ED   ++A+CLAAIS++T
Sbjct:  531 DTYVHRSGRTGRAGTNGVSVLMFSANQQGDIVRIERDLGHGFQFELSGPPSTTSVLKAAAKTSAVASMEIPDETAEYFKESAAALLENGDAED---IVARCLAAISKRT 636          
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: K0RQG9_THAOC (RNA helicase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RQG9_THAOC)

HSP 1 Score: 74.3 bits (181), Expect = 4.020e-13
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRK 342
            DTYVHRSGR          V L+  N+  +I R+E+ +G GFKFE    PS E  +  A   +    K V+D+   +FR++A  LL  + +ED   ++A+CLAAISR+
Sbjct:  598 DTYVHRSGRTGRAGAKGISVVLFQQNQARDIVRMERSLGHGFKFELLGPPSTEAALIAAAKTSAIACKSVADETAEHFREAAGILLATDDAED---VVARCLAAISRR 702          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE98_ECTSI7.240e-4275.23RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A836CKS6_9STRA1.540e-2655.26RNA helicase (Fragment) n=1 Tax=Tribonema minus Ta... [more]
A0A835ZP19_9STRA8.200e-2652.63RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
D7FLB0_ECTSI1.900e-2456.76RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7S2KUG8_9STRA1.910e-1441.28RNA helicase (Fragment) n=1 Tax=Skeletonema marino... [more]
A0A7S2H5C4_9STRA3.310e-1438.53RNA helicase (Fragment) n=1 Tax=Helicotheca tamesi... [more]
B8BZG6_THAPS7.710e-1440.37RNA helicase (Fragment) n=1 Tax=Thalassiosira pseu... [more]
A0A7S0CDF7_9STRA8.170e-1441.44RNA helicase n=1 Tax=Proboscia inermis TaxID=42028... [more]
A0A7S4ART7_9STRA4.000e-1338.53RNA helicase n=3 Tax=Pseudo-nitzschia australis Ta... [more]
K0RQG9_THAOC4.020e-1339.81RNA helicase n=1 Tax=Thalassiosira oceanica TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7195contigH-paniculata_contig7195:689..1408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog2880.D8LE98
KEGG koko:K16911
KEGG Pathwayko01110,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Exons2
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.9322553-CDS-H-paniculata_contig7195:688..9821622930873.9322553-CDS-H-paniculata_contig7195:688..982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7195 689..982 +
1691481491.096241-CDS-H-paniculata_contig7195:688..9821691481491.096241-CDS-H-paniculata_contig7195:688..982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7195 689..982 +
1622930873.9479747-CDS-H-paniculata_contig7195:1354..14081622930873.9479747-CDS-H-paniculata_contig7195:1354..1408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7195 1355..1408 +
1691481491.1088057-CDS-H-paniculata_contig7195:1354..14081691481491.1088057-CDS-H-paniculata_contig7195:1354..1408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7195 1355..1408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7195.15170.1prot_H-paniculata_contig7195.15170.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7195 689..1408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7195.15170.1

>prot_H-paniculata_contig7195.15170.1 ID=prot_H-paniculata_contig7195.15170.1|Name=mRNA_H-paniculata_contig7195.15170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MHACFADTYVHRSGRTGRAGRAGTAVTLYADNELHEIFRIEKGVGQGFKF
ERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDK
ELLLAKCLAAISRKTE
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mRNA from alignment at H-paniculata_contig7195:689..1408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7195.15170.1 ID=mRNA_H-paniculata_contig7195.15170.1|Name=mRNA_H-paniculata_contig7195.15170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig7195:689..1408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATGCCTGTTTCGCAGACACCTATGTACATCGGTCGGGACGCACGGG AAGAGCCGGCCGCGCCGGCACGGCAGTAACTCTCTATGCAGACAATGAGC TGCACGAGATATTCAGGATTGAAAAAGGGGTAGGGCAGGGTTTCAAGTTT GAGCGCGGCGCTGTACCCTCCGCAGAGCAAGTGATGGATCTGGCGGGGAC GGTGGCGCGCGAACAGATCAAGGGTGTGTCTGATGACATGGTATTTTACT TCCGGCAATCTGCTCGGGAGCTTCTGGAAGAGGAGATCTCTGAGGTGTGT ACTGGGGTCGCGGGACGGGAGTCTACTCTGTTCTCGTTTCGAATATGACG AGAACTTGGCTTCTTCAGTGTTCTAGGTTGTGTGCATCTGGGCAAGTATT TGGGGTGAGGCATGCGTGGTAACTTCGTGATTTTAGTGTCCCATTAGTGG ATGCCATTCACGCATATGCCTTTTATGTCGTGGACTGTGTTTTCACTTTT GCAGGTACATCTTGGGTAGGACCAAGGTGAGATCATCCTCTGTGGGTTCG AGCTCGAGTACACCCTTGCTCATGGTGGGGCGCTCAAACATTACGGTGAT TAGGGCTCGCTGTCACTAATGCTCACCGCAATCGTGTCCCCTCCGTTTGT CTGCCTGTACTTACAGGACAAAGAGCTCCTTCTGGCCAAATGTTTGGCCG CCATCTCTCGAAAGACCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7195:689..1408+

>mRNA_H-paniculata_contig7195.15170.1 ID=mRNA_H-paniculata_contig7195.15170.1|Name=mRNA_H-paniculata_contig7195.15170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig7195:689..1408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATGCCTGTTTCGCAGACACCTATGTACATCGGTCGGGACGCACGGG
AAGAGCCGGCCGCGCCGGCACGGCAGTAACTCTCTATGCAGACAATGAGC
TGCACGAGATATTCAGGATTGAAAAAGGGGTAGGGCAGGGTTTCAAGTTT
GAGCGCGGCGCTGTACCCTCCGCAGAGCAAGTGATGGATCTGGCGGGGAC
GGTGGCGCGCGAACAGATCAAGGGTGTGTCTGATGACATGGTATTTTACT
TCCGGCAATCTGCTCGGGAGCTTCTGGAAGAGGAGATCTCTGAGATGCAT
GCCTGTTTCGCAGACACCTATGTACATCGGTCGGGACGCACGGGAAGAGC
CGGCCGCGCCGGCACGGCAGTAACTCTCTATGCAGACAATGAGCTGCACG
AGATATTCAGGATTGAAAAAGGGGTAGGGCAGGGTTTCAAGTTTGAGCGC
GGCGCTGTACCCTCCGCAGAGCAAGTGATGGATCTGGCGGGGACGGTGGC
GCGCGAACAGATCAAGGGTGTGTCTGATGACATGGTATTTTACTTCCGGC
AATCTGCTCGGGAGCTTCTGGAAGAGGAGATCTCTGAGGACAAAGAGCTC
CTTCTGGCCAAATGTTTGGCCGCCATCTCTCGAAAGACCGAGGACAAAGA
GCTCCTTCTGGCCAAATGTTTGGCCGCCATCTCTCGAAAGACCGAG
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