mRNA_H-paniculata_contig7195.15170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: D8LE98_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE98_ECTSI) HSP 1 Score: 156 bits (394), Expect = 7.240e-42 Identity = 82/109 (75.23%), Postives = 93/109 (85.32%), Query Frame = 1
Query: 19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
D+YVHRSGR VTLYA+NE+ +I +IE+GVGQGF+FERGAVPSAEQVM LAGTVAREQIKGVSDDMV +FR+SA+ELL EE SEDKELLLAKCLAAI+RKT
Sbjct: 591 DSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDDMVDFFRESAQELLAEEESEDKELLLAKCLAAIARKT 699
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A836CKS6_9STRA (RNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS6_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.540e-26 Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 1
Query: 19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISE----DKELLLAKCLAAISRKTE 348
DTYVHRSGR VTL+ADNE ++ +IEK +G+GFKFER AVPSA QVM++AG VA + + VS D+V +F +ARELL E ++ D E LLA+CLAAI+RKTE
Sbjct: 386 DTYVHRSGRTGRAGRLGTCVTLFADNERRDVQKIEKAIGKGFKFERAAVPSATQVMEVAGKVALKALDTVSADVVPFFTPAARELLAESQADGAELDTEQLLARCLAAIARKTE 499
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A835ZP19_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP19_9STRA) HSP 1 Score: 110 bits (275), Expect = 8.200e-26 Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1
Query: 19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISE----DKELLLAKCLAAISRKTE 348
DTYVHRSGR VTLYADNE ++ +IE+ VG+GFKFER VPS QVM++AGTVA + + VS+++V +F +A+EL+ E + D E LLA+CLAAI+RKTE
Sbjct: 431 DTYVHRSGRTGRAGRSGVCVTLYADNERRDMQKIERAVGKGFKFERAPVPSPAQVMEVAGTVALKSLTAVSEEVVPFFSSAAKELIAESTASEGGLDTEKLLARCLAAIARKTE 544
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI) HSP 1 Score: 106 bits (265), Expect = 1.900e-24 Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 16 ADTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKTE 348
AD YVHRS R VTLYA+NE+ +I IE+ VG F+FE AVPS EQ+M LA +AR+QIKGVSDD +FR +A+ELL E+ S D ELLLAKCLA I+R T+
Sbjct: 271 ADCYVHRSDRMERAVRPGVTVTLYAENEICDIRNIEQRVG--FRFECRAVPSEEQMMALAVMLARQQIKGVSDDRAEFFRGAAQELLAEDKSADTELLLAKCLATIARMTD 379
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A7S2KUG8_9STRA (RNA helicase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KUG8_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.910e-14 Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 1
Query: 19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
DTYVHRSGR V L+ N+ +I RIE+ +G GFKFE PS E ++ A + K V+D+ +F+++AR LL +ED +A+CLAAISR+T
Sbjct: 93 DTYVHRSGRTGRAGAKGISVLLFQQNQARDIVRIERSLGHGFKFELLGPPSIEAALNAAAKTSAIACKTVADETAEHFKEAARALLANGDAEDT---VARCLAAISRRT 198
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A7S2H5C4_9STRA (RNA helicase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H5C4_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.310e-14 Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
DTYVHRSGR V L+ + +I RIE+ +G GFKFE PS E + A + +G+ D+ +F+ +A LLE+ ED + ++A+CLAAISR++
Sbjct: 551 DTYVHRSGRTGRAGRKGTSVLLFRPYQSRDIVRIERSLGHGFKFELAGPPSIESALSAAAKTSAIACRGIPDETANFFQDAASSLLED--GEDPQQVVARCLAAISRRS 657
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: B8BZG6_THAPS (RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZG6_THAPS) HSP 1 Score: 76.3 bits (186), Expect = 7.710e-14 Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
DTYVHRSGR V L+ N+ +I RIEK +G GFKFE PS E ++ A + +GV+D+ +F+ +A LL S E ++A+CLAAI+R+T
Sbjct: 332 DTYVHRSGRTGRAGASGISVLLFQQNQARDIVRIEKSLGHGFKFELLGPPSTEAALNAAAKTSALACRGVADETAAHFKDAAVSLLAS--SGSPEDVVARCLAAIARRT 438
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A7S0CDF7_9STRA (RNA helicase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDF7_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 8.170e-14 Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEE--ISEDKELLLAKCLAAISRKT 345
DT+VHRSGR V L+ E +I RIE+G+G FKFE PS E ++ A + +GV + V YFR +A +LLE E +ED ++A+CLAAIS++T
Sbjct: 281 DTFVHRSGRTGRAGKKGTSVILFGPYEARDIVRIERGLGHNFKFELVGPPSIEAALNAAAKTSAVACRGVPAETVDYFRNAASDLLETEGMTAED---IVARCLAAISKRT 388
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: A0A7S4ART7_9STRA (RNA helicase n=3 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ART7_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 4.000e-13 Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query: 19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRKT 345
DTYVHRSGR V +++ N+ +I RIE+ +G GF+FE PS V+ A + + D+ YF++SA LLE +ED ++A+CLAAIS++T
Sbjct: 531 DTYVHRSGRTGRAGTNGVSVLMFSANQQGDIVRIERDLGHGFQFELSGPPSTTSVLKAAAKTSAVASMEIPDETAEYFKESAAALLENGDAED---IVARCLAAISKRT 636
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Match: K0RQG9_THAOC (RNA helicase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RQG9_THAOC) HSP 1 Score: 74.3 bits (181), Expect = 4.020e-13 Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 19 DTYVHRSGRXXXXXXXXXXVTLYADNELHEIFRIEKGVGQGFKFERGAVPSAEQVMDLAGTVAREQIKGVSDDMVFYFRQSARELLEEEISEDKELLLAKCLAAISRK 342
DTYVHRSGR V L+ N+ +I R+E+ +G GFKFE PS E + A + K V+D+ +FR++A LL + +ED ++A+CLAAISR+
Sbjct: 598 DTYVHRSGRTGRAGAKGISVVLFQQNQARDIVRMERSLGHGFKFELLGPPSTEAALIAAAKTSAIACKSVADETAEHFREAAGILLATDDAED---VVARCLAAISRR 702 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7195.15170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7195.15170.1 >prot_H-paniculata_contig7195.15170.1 ID=prot_H-paniculata_contig7195.15170.1|Name=mRNA_H-paniculata_contig7195.15170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp MHACFADTYVHRSGRTGRAGRAGTAVTLYADNELHEIFRIEKGVGQGFKFback to top mRNA from alignment at H-paniculata_contig7195:689..1408+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7195.15170.1 ID=mRNA_H-paniculata_contig7195.15170.1|Name=mRNA_H-paniculata_contig7195.15170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig7195:689..1408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7195:689..1408+ >mRNA_H-paniculata_contig7195.15170.1 ID=mRNA_H-paniculata_contig7195.15170.1|Name=mRNA_H-paniculata_contig7195.15170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig7195:689..1408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |