mRNA_H-paniculata_contig7180.15157.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7180.15157.1
Unique NamemRNA_H-paniculata_contig7180.15157.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: A0A6H5LD75_9PHAE (GDP-mannose 4,6-dehydratase n=6 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5LD75_9PHAE)

HSP 1 Score: 700 bits (1807), Expect = 8.410e-246
Identity = 339/352 (96.31%), Postives = 348/352 (98.86%), Query Frame = 2 
Query:  371 PMKKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGEGVDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHVDAGNEHL 1426
            PMKKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAE DGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHA+DYIKGMWLMVQRDEP DYVLSTGECHSVKEFVEE+FKY+GTEITWVGEGV+EYGHAKGD ENVLVKVDPRYFRPTEVELLLGDC+KAK+ELGWVPEI+F ELVKDMMK+DIA+VDAGNEHL
Sbjct:   11 PMKKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEGVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAYVDAGNEHL 362
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: A0A835Z0Z6_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Z6_9STRA)

HSP 1 Score: 561 bits (1447), Expect = 2.140e-191
Identity = 269/349 (77.08%), Postives = 307/349 (87.97%), Query Frame = 2 
Query:  374 MKKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGE--GVDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHVDAG 1414
            MK+A+ITGITGQDGSYLAEFLL KGYEVHGIIRRSSSFNTQRIDH+YRDRH + V+L LHYGDLTDSTNLMHI+  V+P EIYNLGAMSHVKVSFEMSEYTAE DGVGVLRLLNAIRS GLE+  RLYQASTSELYGKVQEIPQ ETTPFYPRSPYGVAKQ+ +WM++NYREAYGM L+NGILFNHESPRRGPTFVTRKITRAV RIHR +Q+ +YLGNL+++RDWGHARDY++GMW+M+Q+D PDD+VL+TGE HSVKEFVE +F Y+GT + W GE   VDE+G    D   VLVKVDP YFRPTEV+LL+G  +KAKR LGW P+ITF+ LV+DMMK+D+A VD G
Sbjct:    9 MKRALITGITGQDGSYLAEFLLGKGYEVHGIIRRSSSFNTQRIDHLYRDRHTTQVKLFLHYGDLTDSTNLMHIVSTVKPHEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSCGLEQSCRLYQASTSELYGKVQEIPQTETTPFYPRSPYGVAKQYAFWMIVNYREAYGMFLSNGILFNHESPRRGPTFVTRKITRAVCRIHRQRQECLYLGNLESQRDWGHARDYVEGMWMMLQQDTPDDFVLATGEMHSVKEFVEASFAYVGTTVAWKGERGSVDEHGVDAADESRVLVKVDPSYFRPTEVDLLIGSPAKAKRVLGWSPKITFKALVEDMMKADLAEVDTG 357
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: A0A8J2SRK3_9STRA (GDP-mannose 4,6-dehydratase n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRK3_9STRA)

HSP 1 Score: 562 bits (1449), Expect = 6.570e-191
Identity = 272/343 (79.30%), Postives = 301/343 (87.76%), Query Frame = 2 
Query:  383 AIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGEG--VDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHV 1405
            A+ITGITGQDGSYLAEFLL KGY VHGIIRRSSSFNT RI+H+YRD+H+  V+L LHYGDLTDS+NL HII  V+P E+YNLGAMSHVKVSFEMSEYTAE DGVG LRLLNAIRSAGLEK TRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQ+ YWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARI +GK KT+YLGNLDAKRDWGHARDY++GMWLMVQRDEPDDYVLSTGECHSVKEF E AF  +G  + W G    VDE G    D   VLVKVDP+YFRPTEV+LL+GDCSKAK+ LGW P++TF+ L ++M+ +D+A +
Sbjct:   62 ALITGITGQDGSYLAEFLLGKGYTVHGIIRRSSSFNTGRIEHLYRDKHDQDVKLFLHYGDLTDSSNLFHIISTVRPSEVYNLGAMSHVKVSFEMSEYTAEADGVGTLRLLNAIRSAGLEKATRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQYAYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARISQGKMKTLYLGNLDAKRDWGHARDYVEGMWLMVQRDEPDDYVLSTGECHSVKEFCEVAFARVGITVQWKGAAGSVDEIGVDATDPSRVLVKVDPKYFRPTEVDLLVGDCSKAKKLLGWAPKVTFKALAEEMVDADLAEL 404
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: F0YLN7_AURAN (GDP-mannose 4,6-dehydratase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLN7_AURAN)

HSP 1 Score: 548 bits (1412), Expect = 4.980e-186
Identity = 261/347 (75.22%), Postives = 301/347 (86.74%), Query Frame = 2 
Query:  377 KKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGEG--VDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHVDA 1411
            K A++TG+TGQDGSYL EFLLEKGY VHGIIRRSSSFNT RI+HIY+D H   VRL LHYGDLTDS+NL HII EV+PDEIYNLGAMSHVKVSFEMSEYTAE DG+G LRLLNA+RSAGLEK  RLYQASTSELYGKVQ IPQ ETTPFYPRSPYGVAKQ+ YWML+NYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAV RI   +QKT+YLGNLDAKRDWGHARDY++GMWLMVQRD PDDYVL+TGECHSV+EFVE +F+++G ++ W GE    +E G    D  + LVKVDP+Y+RPTEV+LL+GD +KA+R+LGW P+ITF++L  +M+ +D+A + A
Sbjct:   16 KVALVTGVTGQDGSYLTEFLLEKGYVVHGIIRRSSSFNTGRIEHIYKDMHADDVRLFLHYGDLTDSSNLFHIISEVKPDEIYNLGAMSHVKVSFEMSEYTAEADGIGTLRLLNAVRSAGLEKSCRLYQASTSELYGKVQAIPQTETTPFYPRSPYGVAKQYAYWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVVRIKAQQQKTLYLGNLDAKRDWGHARDYVEGMWLMVQRDVPDDYVLATGECHSVREFVEVSFEHVGIKVKWTGEPGTAEEVGVDAADESHELVKVDPKYYRPTEVDLLVGDAAKARRDLGWKPKITFKKLATEMVDADMAELKA 362
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: A0A4D9D4U1_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4U1_9STRA)

HSP 1 Score: 548 bits (1413), Expect = 6.760e-186
Identity = 255/349 (73.07%), Postives = 307/349 (87.97%), Query Frame = 2 
Query:  377 KKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGE--GVDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHVDAGN 1417
            K A++TG+TGQDGSYL EFLLEKGY VHGIIRRSS+FNT RI+H+Y+DRH + VR  LHYGDLTDSTNL  +I +++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+G LRLLNA+R+ GLEK TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ YW+L+NYREAY M L NGILFNHESPRRGPTFVTRKITRAVARI +G QKT+YLGNLDAKRDWGHARDY++GMW+M+Q D PDD+VL+TGE H V+EFVE+AF+++G E+ W GE   V E G+ K D E+VLVK+DP+YFRPTEVELLLGD +KAK+ +GW PE++F++LVK+M+++DIA V+ G+
Sbjct:   36 KVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYLGNLDAKRDWGHARDYVRGMWMMLQHDTPDDFVLATGETHPVREFVEKAFRHVGMEVEWKGEKGSVHEVGYNKADPEHVLVKIDPQYFRPTEVELLLGDPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGD 384
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: A0A7S2GBW7_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GBW7_9STRA)

HSP 1 Score: 540 bits (1392), Expect = 8.780e-183
Identity = 260/349 (74.50%), Postives = 301/349 (86.25%), Query Frame = 2 
Query:  377 KKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGE--GVDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHVDAGN 1417
            K A+ITGITGQDGSYLAEFLL+KGYEVHGIIRRSSSFNT RI++IY+DRH   V+L LHYGDLTDSTNL+ I+ + +PDEIYNLGAMSHVKVSFEMSEYTAE DGVG LRLLNAIRS G+EK  RLYQASTSELYGKVQEIPQ ETTPFYPRSPYGVAKQ+ YWM++NYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAV RI +G Q  ++LGN+D++RDWGHARDY+KGMWLMVQRDEP+D+VL+T ECHSV+EFVE+AF+ +  +I W GE   VDE G    D    LVK+D +YFRPTEV+LL+GD +KAK+ LGW PEITF+ LV +MM+ D+  V+AG+
Sbjct:   33 KIALITGITGQDGSYLAEFLLDKGYEVHGIIRRSSSFNTYRIENIYKDRHAEDVKLFLHYGDLTDSTNLVQIVADCRPDEIYNLGAMSHVKVSFEMSEYTAEADGVGTLRLLNAIRSCGMEKTCRLYQASTSELYGKVQEIPQTETTPFYPRSPYGVAKQYAYWMIVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVCRISKGLQDILFLGNIDSQRDWGHARDYVKGMWLMVQRDEPEDFVLATNECHSVREFVEKAFEAVDMKIKWTGEKGSVDEVGVDASDESRALVKIDLQYFRPTEVDLLIGDPAKAKKLLGWEPEITFDGLVTEMMEEDMKLVEAGD 381
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: A0A7S2PLW2_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PLW2_9STRA)

HSP 1 Score: 536 bits (1380), Expect = 2.350e-181
Identity = 253/351 (72.08%), Postives = 301/351 (85.75%), Query Frame = 2 
Query:  371 PMKKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGE--GVDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHVDAGN 1417
            P KKA+ITG+TGQDGSYLAEFLL+KGYEVHGI+RRSSSFNT RIDHIYRDRHE+ V+  LHYGDL D+TNL+ +I +++PDEIYNLGAMSHVKVSF+M EYTA+CDGVGVLR+L+AIR++GLEK  R YQASTSELYGKVQE+PQ ETTPFYPRSPY VAKQ+ YW+L+NYREAYGMHLTNGILFNHESPRRG TFVTRKIT  +A I  G ++ +YLGNLDAKRDWGHARDY++GMW+M+Q++  DDYVL+TGE HSV+EFVEEAF+YI   I WVG+   VDE G    D   VLV++DPRYFRPTEV+LL+GD +KAKR LGW  + TF+ELV++MM SDI  +++ N
Sbjct:    7 PPKKALITGVTGQDGSYLAEFLLDKGYEVHGIVRRSSSFNTSRIDHIYRDRHETGVKFYLHYGDLCDATNLISLISQIKPDEIYNLGAMSHVKVSFDMPEYTADCDGVGVLRMLDAIRASGLEKSVRFYQASTSELYGKVQEVPQSETTPFYPRSPYAVAKQYAYWILVNYREAYGMHLTNGILFNHESPRRGRTFVTRKITAELAMIKTGMRQCLYLGNLDAKRDWGHARDYVEGMWMMLQQEVSDDYVLATGETHSVREFVEEAFQYIDITIKWVGDTGSVDEIGVDSADESRVLVRIDPRYFRPTEVDLLIGDPAKAKRVLGWEAKTTFKELVREMMVSDIKLMESNN 357
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: A0A7S2XZ47_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ47_9STRA)

HSP 1 Score: 528 bits (1361), Expect = 2.720e-178
Identity = 257/359 (71.59%), Postives = 302/359 (84.12%), Query Frame = 2 
Query:  356 VTPKKPMKK----AIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRD-EPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGEGVDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHVDAGN 1417
            + PK P K     A+ITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNT RI+H+Y D+      LKLHYGDL DSTNLM II +++PDEIYNLGAMSHVKVSFEM EYTAE DGVG LRLL+A+R+AGL +  R+YQASTSELYGKVQEIPQ E TPFYPRSPYGVAKQF +WML+NYREAY MH  NGILFNHESPRRGPTFVTRK+TRAVARIH+G Q+ + LGNLD++RDWGHARDY++GMW+M+QRD E +DYVL+TGECHSV+EFVE+AF YIG  + W G GVDE G    + + VLVK++PRYFRPTEV+LL+GD SKAK  LGW P++TF+ LV++MM++DI  V+ G+
Sbjct:   17 ILPKYPDKVEGKVAMITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTNRIEHLYADK-----ALKLHYGDLCDSTNLMAIIAQIKPDEIYNLGAMSHVKVSFEMPEYTAEVDGVGTLRLLDAVRAAGLVETCRVYQASTSELYGKVQEIPQTEKTPFYPRSPYGVAKQFSFWMLVNYREAYNMHCINGILFNHESPRRGPTFVTRKVTRAVARIHKGLQQDLQLGNLDSQRDWGHARDYVEGMWMMMQRDGEAEDYVLATGECHSVREFVEKAFHYIGITLGWRGSGVDEVGFDSANEDRVLVKINPRYFRPTEVDLLVGDASKAKNLLGWSPKVTFQALVEEMMQADIDKVEKGD 370
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: B8C1P6_THAPS (GDP-mannose 4,6-dehydratase n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C1P6_THAPS)

HSP 1 Score: 527 bits (1357), Expect = 7.030e-178
Identity = 256/345 (74.20%), Postives = 290/345 (84.06%), Query Frame = 2 
Query:  377 KKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGEG--VDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHV 1405
            K A+ITGITGQDGSYL E LL KGY VHGIIRRSSSFNT RIDHIYRDRHE+ V+L LHYGDL D+TNL+ II  V+PDEIYNLGAMSHVKVSF+M EYTA+CDGVGVLR+L+AIR+ GLEK  R YQASTSELYGKVQE+PQ ETTPFYPRSPY VAKQ+ +W+L+NYREAYGMHLTNGILFNHESPRRG TFVTRKIT AVARI  G  K +YLGN+DAKRDWGHARDY++GMW M+Q D PDDYVL+TGE H+V+EFVE+AF + GT I W GE   V+EYG    D   VLV++DPRYFRPTEV+LLLGD SKAK+ LGW   + FE LVKDMM +D+A V
Sbjct:    5 KVALITGITGQDGSYLTELLLSKGYTVHGIIRRSSSFNTGRIDHIYRDRHETGVKLFLHYGDLCDATNLITIIANVKPDEIYNLGAMSHVKVSFDMPEYTADCDGVGVLRMLDAIRACGLEKSCRFYQASTSELYGKVQEVPQSETTPFYPRSPYAVAKQYAFWILVNYREAYGMHLTNGILFNHESPRRGATFVTRKITIAVARITEGLDKCLYLGNIDAKRDWGHARDYVEGMWRMLQHDTPDDYVLATGETHTVREFVEKAFAHAGTTIAWKGETGTVNEYGVDAADESRVLVRIDPRYFRPTEVDLLLGDPSKAKKTLGWEATLGFEGLVKDMMTADLAMV 349
[Close]
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Match: A0A7S3LZH8_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZH8_9STRA)

HSP 1 Score: 526 bits (1356), Expect = 1.150e-177
Identity = 252/352 (71.59%), Postives = 298/352 (84.66%), Query Frame = 2 
Query:  377 KKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHSVKEFVEEAFKYIGTEITWVGEG--VDEYGHAKGDSENVLVKVDPRYFRPTEVELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHVDAGNEHL 1426
            K+A+ITGITGQDGSYLAE LLEKGYEVHGIIRRSSSFNT RIDHIYRDRHE+ V L LHYGDL+DSTNL HII  V+P EIYNLGAMSHV VSFEMSEYTAE DG+G LR+LNAIRS GL   TR YQASTSELYGKV+EIPQ E TPFYPRSPYGVAKQ+ YW+++NYREAYGMH TNGILFNHESPRRGPTFVTRKITRAVA+I+RGKQ+ ++LGNLD++RDWGHA+DY++GMW M+Q D+ DDYVL+T E H V+EFVE+AF ++G  I W+GE   VDE G    D   VLV+VDP+YFRPTEV++L+G+ +KA+R+LGW P   F  LV++M+ +D+A VD+G E +
Sbjct:   13 KRALITGITGQDGSYLAELLLEKGYEVHGIIRRSSSFNTGRIDHIYRDRHETHVSLFLHYGDLSDSTNLFHIISTVKPHEIYNLGAMSHVAVSFEMSEYTAEVDGIGALRILNAIRSCGLTNFTRFYQASTSELYGKVREIPQTEDTPFYPRSPYGVAKQYAYWIVVNYREAYGMHATNGILFNHESPRRGPTFVTRKITRAVAKIYRGKQQQLFLGNLDSQRDWGHAKDYVEGMWRMLQADQADDYVLATNETHPVREFVEKAFAHVGIIIKWLGERGTVDEIGVDSADESRVLVRVDPKYFRPTEVDILIGNPAKAERQLGWKPTTLFSALVEEMVAADVALVDSGKEDI 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7180.15157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD75_9PHAE8.410e-24696.31GDP-mannose 4,6-dehydratase n=6 Tax=Phaeophyceae T... [more]
A0A835Z0Z6_9STRA2.140e-19177.08GDP-mannose 4,6-dehydratase n=1 Tax=Tribonema minu... [more]
A0A8J2SRK3_9STRA6.570e-19179.30GDP-mannose 4,6-dehydratase n=3 Tax=Pelagomonas ca... [more]
F0YLN7_AURAN4.980e-18675.22GDP-mannose 4,6-dehydratase n=2 Tax=Aureococcus an... [more]
A0A4D9D4U1_9STRA6.760e-18673.07GDP-mannose 4,6-dehydratase n=1 Tax=Nannochloropsi... [more]
A0A7S2GBW7_9STRA8.780e-18374.50GDP-mannose 4,6-dehydratase n=1 Tax=Florenciella p... [more]
A0A7S2PLW2_9STRA2.350e-18172.08GDP-mannose 4,6-dehydratase n=1 Tax=Leptocylindrus... [more]
A0A7S2XZ47_9STRA2.720e-17871.59GDP-mannose 4,6-dehydratase n=1 Tax=Fibrocapsa jap... [more]
B8C1P6_THAPS7.030e-17874.20GDP-mannose 4,6-dehydratase n=2 Tax=Thalassiosiral... [more]
A0A7S3LZH8_9STRA1.150e-17771.59GDP-mannose 4,6-dehydratase n=1 Tax=Spumella elong... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7180contigH-paniculata_contig7180:2622..10414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score705.3
Seed ortholog evalue1.8e-200
Seed eggNOG ortholog2880.D8LKT9
Preferred nameGMDS
KEGG rclassRC00402
KEGG koko:K01711
KEGG ReactionR00888
KEGG Pathwayko00051,ko00520,ko01100,map00051,map00520,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007276,GO:0007281,GO:0007292,GO:0008150,GO:0008152,GO:0008446,GO:0009058,GO:0009225,GO:0009226,GO:0009636,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019673,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0034641,GO:0034654,GO:0036094,GO:0042221,GO:0042350,GO:0042351,GO:0042802,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046368,GO:0046483,GO:0048037,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051302,GO:0051704,GO:0051716,GO:0055086,GO:0065007,GO:0070401,GO:0071704,GO:0097159,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:2000035
EggNOG free text desc.GDP-mannose 4,6-dehydratase activity
EggNOG OGsCOG1089@1,KOG1372@2759
EC4.2.1.47
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons9
Model size2701
Cds size1335
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.5241294-UTR-H-paniculata_contig7180:2621..27031622930871.5241294-UTR-H-paniculata_contig7180:2621..2703Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7180 2622..2703 +
1691481489.842883-UTR-H-paniculata_contig7180:2621..27031691481489.842883-UTR-H-paniculata_contig7180:2621..2703Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7180 2622..2703 +
1622930871.5383365-UTR-H-paniculata_contig7180:4756..47681622930871.5383365-UTR-H-paniculata_contig7180:4756..4768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7180 4757..4768 +
1691481489.8569126-UTR-H-paniculata_contig7180:4756..47681691481489.8569126-UTR-H-paniculata_contig7180:4756..4768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7180 4757..4768 +
1622930871.6753418-UTR-H-paniculata_contig7180:9142..104141622930871.6753418-UTR-H-paniculata_contig7180:9142..10414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7180 9143..10414 +
1691481489.972043-UTR-H-paniculata_contig7180:9142..104141691481489.972043-UTR-H-paniculata_contig7180:9142..10414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7180 9143..10414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930871.5544574-CDS-H-paniculata_contig7180:4768..51191622930871.5544574-CDS-H-paniculata_contig7180:4768..5119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 4769..5119 +
1691481489.8688698-CDS-H-paniculata_contig7180:4768..51191691481489.8688698-CDS-H-paniculata_contig7180:4768..5119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 4769..5119 +
1622930871.5695589-CDS-H-paniculata_contig7180:5868..60241622930871.5695589-CDS-H-paniculata_contig7180:5868..6024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 5869..6024 +
1691481489.8794441-CDS-H-paniculata_contig7180:5868..60241691481489.8794441-CDS-H-paniculata_contig7180:5868..6024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 5869..6024 +
1622930871.5818462-CDS-H-paniculata_contig7180:6566..67251622930871.5818462-CDS-H-paniculata_contig7180:6566..6725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 6567..6725 +
1691481489.892257-CDS-H-paniculata_contig7180:6566..67251691481489.892257-CDS-H-paniculata_contig7180:6566..6725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 6567..6725 +
1622930871.5935705-CDS-H-paniculata_contig7180:6869..69981622930871.5935705-CDS-H-paniculata_contig7180:6869..6998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 6870..6998 +
1691481489.9006393-CDS-H-paniculata_contig7180:6869..69981691481489.9006393-CDS-H-paniculata_contig7180:6869..6998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 6870..6998 +
1622930871.6056683-CDS-H-paniculata_contig7180:7560..77151622930871.6056683-CDS-H-paniculata_contig7180:7560..7715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 7561..7715 +
1691481489.9151971-CDS-H-paniculata_contig7180:7560..77151691481489.9151971-CDS-H-paniculata_contig7180:7560..7715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 7561..7715 +
1622930871.6206055-CDS-H-paniculata_contig7180:7975..80961622930871.6206055-CDS-H-paniculata_contig7180:7975..8096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 7976..8096 +
1691481489.9336336-CDS-H-paniculata_contig7180:7975..80961691481489.9336336-CDS-H-paniculata_contig7180:7975..8096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 7976..8096 +
1622930871.633241-CDS-H-paniculata_contig7180:8356..84971622930871.633241-CDS-H-paniculata_contig7180:8356..8497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 8357..8497 +
1691481489.9485173-CDS-H-paniculata_contig7180:8356..84971691481489.9485173-CDS-H-paniculata_contig7180:8356..8497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 8357..8497 +
1622930871.6549094-CDS-H-paniculata_contig7180:9019..91421622930871.6549094-CDS-H-paniculata_contig7180:9019..9142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 9020..9142 +
1691481489.9594665-CDS-H-paniculata_contig7180:9019..91421691481489.9594665-CDS-H-paniculata_contig7180:9019..9142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7180 9020..9142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7180.15157.1prot_H-paniculata_contig7180.15157.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7180 4769..9142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7180.15157.1

>prot_H-paniculata_contig7180.15157.1 ID=prot_H-paniculata_contig7180.15157.1|Name=mRNA_H-paniculata_contig7180.15157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=445bp
MSETALKPTDVPSVEETPKVDKTETTGVEQAGTETMSAVEGGKKPEAVVK
DSEQTPKATDGEESAKVSPEPAQAIIQGDAATAAVNDVTPKKPMKKAIIT
GITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRL
KLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAECDGV
GVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYG
VAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARI
HRGKQKTIYLGNLDAKRDWGHARDYIKGMWLMVQRDEPDDYVLSTGECHS
VKEFVEEAFKYIGTEITWVGEGVDEYGHAKGDSENVLVKVDPRYFRPTEV
ELLLGDCSKAKRELGWVPEITFEELVKDMMKSDIAHVDAGNEHL*
back to top

mRNA from alignment at H-paniculata_contig7180:2622..10414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7180.15157.1 ID=mRNA_H-paniculata_contig7180.15157.1|Name=mRNA_H-paniculata_contig7180.15157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7793bp|location=Sequence derived from alignment at H-paniculata_contig7180:2622..10414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTTATCAGTTGTAATCACTTCTTCTGTCAGCGACCAAGACTCTAGGCC
ACAGTCATCCCACCGAGGACTACCGACACCAGGTAACTTTGCAATATCAT
ATGCTCGTTCATTTGGTGTCGTACGAAGCTAGTTCGGGGGTAAGTTGGTT
GGTGGGAGGAGTTGTTGCCTGCCGAACAGCTTGTGCGTACAGCTGAGAGC
TGAACAGCGGGATATGGTATCTTTTCTGGTTAATCATTTACAGTAATTAC
GTTTCACTTGTGTCCCCACCCGTTTCGTATAATTGCTTCATCTCCGATCG
AGTGTGCGGCTATGGCTGTGCAAGTCTCTGAGCGCTGGTAGTGGCATTGC
GTCGAACCTCCCTAAGCAAGCATTATGTGGAGAGAGTATTCAAATTACGT
CAGATGTTGCGTGAGTTAGGCCTGTCGTGTGATGTCGAGCTGTTCACCTG
TGCCAAAGAAGCCCGCCGACACATTTGTTCGGCTGATTTTAATTTGTCAG
TTTTCATGTGCTGTTTTTCTTGTTCTCGTCTAATACTCTAATACCTGTTC
AACAGCAACAGTTTACCACAGCAACAGGTCAAGGGCATGCCTTAACACTC
GACCTTTTCCCTCTCCAGCTCAAGATTTTCTGTGCGTCACTGCTCAGGAA
AGTGTAAAAATTGTTGAGTAGTTATTTGGGTTCTGTCCCATTAGATGAGC
TGTACTGTACAGCCTGTAGACAATTTCTCTATGATAATCTTTCGGTGCCT
TGGAAAAATAAGGTGTGAGATGAGGAGATGTGAGCAAGTGGGCTACATAC
TGTGGAGTGAACCTGCTCCTGCTTCCTTTGGCTATGTTATGCACCCCATT
ATTTTGTGTAATGCTACTGAGCTGTTAGATTACTCTTGCGTCATCATTGC
ATGTACAGTATAGACATTTCGAGCTTGTGCAAGTACAGTATGATACCGTA
CCGTACACGATGCAATGTGGGACAGAATACAATCCGTTCACCCATTGTAC
ACTTTCTCCCATGAAACGTATGTTGTATTTTTCAACAGAGTAAAGTTCCG
GAAAATTCTTTCCGAACTGCGGAGACTCGCACCACCTTAAACCTAGATAC
CTCAGTAGATGAATCTTTGATGTCGAGAAATGGGACAGTAAAGCGCCACA
AAACCGTGCAACTCGTCCTGAAACCCGAGTAAGCAAACAATCCAGCTACA
GCAGTTTGGCAGGAGGAGAAATAAATGTTTTCTGATGTGTGATATGTGAT
CTGTGTCTTCGTGTCTCACATTGTATTTGCAATGTAACTGTCAGTTACTG
GTGTCCTTGACCTGGCCCACGAACCATATTTGACACCTTGGGCTTTTTGA
GCACGTCAACTCCACATCGATCACGAGGTGGCTGACTATTTCCTTCGAAT
GAAAATATGAGGCTTCGTCAGTTGTTTCTGTTTGGTTATTGGATATGATC
GGAAAATACTTGTTTGGAATAAACAAACCTCCAACCTGTTATATTTTTTT
CCACACAACAAAATATCACAATTCGGGCAGAGTTGCCGCTGTCCTTGATT
CCGAAATGAACAGGGCTAGATTTGAAACTTGTAAAAACTGTAGGAACAGG
AGAGCGTTGAATTTTCCACATGTGGGACGGATTAAAATCCGTACGATTCG
TGGGGTTCAGATCAGTGGCGTACAGATATTTGCTAACGGTCCACAGCGGT
GCGTCACCGGTCTGAAGCACGTAAGCACCGAATATGCCGTAGAATTGTTC
TTGCAGAATACGTGCGAACGATCCGCAAGCGTAGGCATCACCAGTACAAA
AATACATACGGATCATACCGCGATACACGGCTGACTAACGGGAAAAATGT
ACAGGATAAAATATCTAGGATTTGATCCGTCCGTCGCATGTATTCTTTGG
ATTGTTTGTTGTATTCGTTTGTGAAGCATCGGCTGTGAGGCAAATCATGC
GACACCAGACTACAGAAGAGTTATGCTTGATTGTGCGGAAATCGTCCTGT
TTTGCTCCATCGAAATGTGTCCACTGCACTGCAGTACACTGTAGCTAATG
GTGATGTGGAACCAAAAATCGTCGATTTAAACTGTGTACATAACGTGAGT
ACAAATATCGTAACTTGAGACTTGACCCACAACAGGATATCAATAACATG
TCGGAGACAGCATTGAAACCAACGGATGTACCCAGCGTCGAGGAGACTCC
CAAGGTCGACAAAACTGAAACGACTGGGGTGGAGCAGGCTGGGACCGAGA
CCATGTCGGCGGTAGAGGGAGGAAAGAAGCCGGAGGCAGTGGTGAAGGAT
TCAGAGCAGACACCGAAAGCGACTGATGGCGAAGAATCCGCGAAAGTCTC
GCCCGAACCAGCACAAGCAATCATTCAGGGAGATGCAGCGACGGCGGCAG
TTAACGATGTGACGCCGAAGAAGCCAATGAAGAAGGCAATCATAACCGGT
ATCACAGGACAGGATGGATCGTACCTCGCGGAGTTCCTGCTTGAAAAGGT
ATGTCTACTCACGTACTCTCCACACCTGTGACTGTTTTTCTCCGTGCTGT
GCACACTCTATCCCAGCAAGATTGTTGTGGTGGGCGTCACATATCACAAA
CGTGAATAGTCAGTCGTCATACGATAAAACTACTTGTTGCCACCTTTGTA
TCTCCGGCAAAAGTCACAGGTCGAATCACAGGCCCGATGCGTCATTACCC
CCGCATAATCGTATTGTGCAGATGGAGTGGAGAATTAGAGGTCCTGGGAA
CGGTTTGTCTGATGAGTGTTTCCAGACTGTGTCGGCGTAACTAGCTCGCC
ACATCACGTGTCACACTATTGTGGGTGACATGAGGCGTGTGTATGTTTGC
TCTTGAGGGAACGCTGCTGCGCATTGTTTCGCCCGAAATATATCTACTAG
TTGTCCCCGAAAAGTGACATGGCGTCGTGTGTCACAGCTCGAGGGAGCTG
AGTGATGAACCAACGGTGGTACATCGTCAGGGATGTAGTACTTACTCATT
TATCGCAGGGCACGAGGGGCTGATGTATATGCCATGAAAACTGCTGAAAC
AGATGTATGAATGATGAAATTTGGACGTCACCTTCCAATATCACTCGGAA
ACAACAATTGTGGCTATATTGTGATTCGTGCAGCATCTTTTGTACTGTCG
TGCACGCCACCTGTACAAAACTGGTACTCGCGTGTCACCCTTCCCCCTCA
CGCTGTTTTGCCCCCACTATTTTTGTTGGCCTTGGGTTGGAAAGTAGGGA
TATGAGGTGCACGGTATCATCCGACGATCTTCAAGCTTCAACACTCAGCG
CATCGACCATATTTACCGCGACCGTCACGAAAGCGCCGTGCGCTTGAAGC
TACACTACGGGGACTTAACGGACTCCACCAACTTAATGCACATCATCTAC
GAGGTGAGGAAAAAGAAAAGTCTTGCGTGCTCTCAAGTTTCATCTGTAGT
ACTCCATACCGGGCGTGACCCTTGCGTTGCTATACATGTCATGCATTGAA
TGTACTGGGTTTGCTTTTTCGAGCAAGGATGATAGAGGTCCTTTACCCAA
CTTGGTATCCTTCGATCGTGAACTTTTTTTCGTGGGTGTTTTTAGTACAT
TCGGGGCGTGAGGAATGTGCGAAGAACACATGCCAACATTCTCGATTTTG
TCCGATTTTATTTATGTTCAATTCGGCTCAGTCAGATTCCGGTGAACACC
GTTCTTAAGTCTGTTGTTTTTCATGGGCTGGTCCATTGTTCGTTCGTTGT
CTCCCATATTGTTTTTTCATCTCATGATCGGCTTCTTGTCGCGGATTTCC
GTGGTTTTCCTCTTGCGTTTTCACTCCTTTGTGCTGGCTGTCTGCCTGTA
TTGTCTGTGTGGGATCGTTTCCAACCTATCCTCCATCTCCGCCCGTGGCC
TCGGTTCCGCGCGTGTGAAACACTCGGAAAACTAATATATGACAGGTACA
GCCGGATGAAATCTACAACCTTGGAGCTATGTCTCACGTGAAGGTTTCGT
TTGAGATGTCCGAATACACCGCCGAGTGCGATGGCGTGGGTGTGCTGCGA
CTGCTGAACGCGATCCGGTCTGCTGGCTTAGAGAAGAAGACGCGCTTGTA
TCAGGTACGTCATGCGTGGCGTGCTGTATGTAACTTGACGTACGTCAAAC
TATAGACAACTGAGGTTTGTACCAATACCTGTTGTTCCCTATAAAGTAAG
AACTTGTCCCATACCTACCGTCCGGTGTCGTGTTTTGTGCTCCAACAGGC
GTCAACCTCCGAATTGTATGGCAAGGTGCAGGAGATCCCCCAGAAGGAGA
CGACCCCTTTCTACCCTCGCTCGCCTTACGGTGTGGCCAAGCAATTTGGC
TACTGGATGCTCATCAACTACCGCGAGGTCCGTAACCGATCGAAAAGAAC
AGCAGGACAGTGAACTTGGCTGTAGTGGACCTCTCCGATGTTATTAATAA
AAAAAAGGTCCAAGCTCATGTTTTCCCGTTGTCGTTTGGCTTGGTGCATA
TGCCAGGGATTTCAACGAATGTTGGAGTGTGTAGGGAAATGTTCAAAATG
GGGTTGACTGTACGGCTGTGTCTTCCGTTGTGAATTTGCGACGCTGAGAG
TAAAATGCTGATGTCCAGGTGCAGGTCTCAGAGAAGTCGAGAGCGTCAGC
CAGGTTCCAGACGGTTCGGTTCATTACATGGCTAGATATGTGCGCGGAAG
AAATCAATTTGTAATTGTTATTTGCTTGACGGTGTCTCAGGAGGCCGCAC
CTGCTGTATACTTGGCGTTGTAAAAAAGTGATTTCGGCACAACTTTTGTG
TCATGCACCATAGTATTTCTACATCGCTCTAGCGTATGAGCCTTCTTCAT
TACTCAACTTTTGACTTCGTCCCCTCTTCCCGCCATGCGTGCACGCCCGC
CCTCTCGCTCCTCCCCCTGTTCTCTGATATTAATGGAAGGCGTACGGAAT
GCATCTGACGAACGGTATCCTCTTCAACCACGAAAGCCCTCGCCGAGGCC
CTACCTTCGTCACCCGTAAGATCACCCGTGCCGTGGCTCGTATCCACCGT
GGTAAGCAGAAGACCATCTACTTGGGGAACCTGGACGCAAAGCGGTGGGT
GTTTTTGTGGGACGTTTCGTCACGTCTTGGCAATAGAAGTGGTACTGTCA
CACAGTCAAGATCATTCAATTGAAAATTGAACAAAAGATTACATGAAAAG
GAGTATATTTTTGCACTCATCCTTCCTCAGGATTGGGTTTTCATTGGGGA
GAATGTGCGTATTGAACATATGCCAAAGACAATACATCGGAAATCTTGTA
GAGCGAGATCTTGATTGCTTTTGCCCTCTTTCTTTTAACTACGTGTAAAA
CCAGCGACTGGGGCCACGCAAGGGACTACATCAAGGGCATGTGGCTCATG
GTACAGAGGGATGAGCCCGACGATTACGTGCTCTCTACTGGGGAGTGCCA
CAGCGTCAAGGAATTTGTCGAGGAGGTGTGTGAACTTTGTTACTACACTA
ATGTCCTGCAGATACATTCGAGGTGAAACAAAGAGAGCCACCTCCAGCTA
CTGCAGAAAGTACCGTGTGATACTCATTGTTATTAATTTGAATCCTCATG
TGTATAATGAGGAATTGAATACGAAGTACTCTGCTATCAGTATATCAAGC
TTCGAATAACCAATATTTTTTGTCATCCCGTGTGTGCCGTACCTCTTTCG
AAATGAAACATCTGCTCTGAAACGAAACCACACAGGCGTTCAAGTACATC
GGAACAGAGATAACATGGGTGGGCGAAGGGGTAGATGAATACGGACATGC
CAAGGGTGATTCTGAGAACGTCCTCGTCAAGGTTGACCCGCGCTACTTCC
GGCCTACGGAGGTCGAGCTCTTGCTGGTGAGGCGTGAGACCTGTGCTGTG
GAACACCGAGGTGTTGGTAGCACTACCGGGGTGTGAGCATTTTCGAAAAT
AAAATTATCTCGAAATGTAAAATAATGGACATTGCGCGCTCGAGAGAATT
CGGCAATCGATCGGCAAGATCGGTTTGACGGCGCACTGATTGCTGTTGGT
GGCGCCATAGATCTCGAGTACGTATCCCCTCCAGCGGAGCTTGTCCGCTC
TGCTTGGACTCAACCAGGAGACTTATGACGGCCGAGCATCAAAGTCCTGT
GGCATCGACAAAGTGCTGTCGGATGAATCTTTTGAATCCACGTGTACCGC
GAAGCGGTCCGGCGGTAACCATGAAACCCTCGGGGCGCAACTACGTAGTA
CTCAATCAAACTCACTTGGTCATGTCACACTACCATGAAGATGTAGACTA
CACTTTTGAAGGCAATTTACGAGAACGTCGATGGAACCGATAGTGGTGTG
TTTTGACGTGTTGATCCTCCCCCCCTTGTGCATTGGTGTAAAACCCAGGG
TGATTGCTCGAAGGCGAAGAGGGAGCTGGGGTGGGTGCCAGAGATCACGT
TCGAAGAGCTGGTCAAGGACATGATGAAGTCCGACATCGCACACGTGGAT
GCGGGCAATGAACACCTCTAAAGTACAGGAAACTTCGCGAACTCGTAGGG
TAAATGGCGCCTACTAGCTATAGCTGAGGTTGATTGTATCCAACAGATTT
GACACATGTAAGAGTATGACCAGTATTGGTGAGTATCAAAAGTATATCCT
CTTCGTGCCTAGCACACGAAGCGCAATATGCACCATGCATCGAAACGAGG
ATGGTCGATTATCTCGGCGGTGAAAGCCGCCCAGCGGTCCGAGGGAGAAA
GTTATAAAAATAGGGACGTTGTGAATTTTCTTGATCCGCATTTCTCTCTG
TCCAAAGAGAGGAAGCATCAAGACGTATCTAAAGTTTTCCTCTCAAATCT
CTCTTTTGGTATATCTGACTAATGGAGGAAGCATGTTCACAAGGCAACTC
AGAGTGTTTCGAGAGACAATAGTTGTGTTTTCGCGTTCGCTAGCTGTGGT
CCAAATCGCTCATGTGTTGGGAGGCGCTGGAAGGATGAAGAGATAGATCT
CTGGCTAAGTGTAACTAGTGTAATTTGGGTCACGTTTCTGTGCATTAAGC
CTTAACATTGTCGTTTGATGTTGTACAAGTAGCCAGATGTTGTTCTGAAG
TTGGATTCGCAGGCAGAAATGGTGGATTTTGCCAGTTTTGTCGTCGTTTT
GGTTCTAATTGTTTCATGTGTTAGGTTTGTTTTGTGTTCGATTTGTCCCG
TTGAGCTGGTTCCGTGTTTGCTCATTCTAGATGGAGAAAAAGTGACAGGC
AAACACAATCTAGGCGAACAATGTGCGTGAAGGTGGTGGTATACATACCG
ACGTGTCGAGTGTTGTCCTCCCCACCATACATGTGGCCGTTGCATAATGG
ATAGTGATCCGTATTGTTTTGTGTTGAGCAACTAGTGGAGCATATGACAG
TCTTGCATGGTTTCATGCATGATTCTCGATGTCCGTAGGAGAAGGAACGG
TCTATATTCAGTTAGTATGATCAATCGCCGCCCACCTATTCTTACTAATA
GTACCAGGTGGCATGTCAAGCAGTTGTGGCTATGATGTTACTAATGCCTT
CAAGTTTTCGAGTCTACGTGTAAAATATTGATTTGTTGGTTCTGAAGCAA
TAAAGAGTCTACGTGTAAATGTCTCGAAGAGAAATGAGAAATGATGGGCG
GGGTACACAGGCGAAGAATGTGACCGTCGCCTTAGTGCAAAGGAATTACG
GATTGAAAACCTCATATTTTGTCTTGAATAGTCTAGTCTCGTATGTGATC
CTCGAGCTGCGAGATGGTGACTCCTCTAAAAATTGAGCTGTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7180:2622..10414+

>mRNA_H-paniculata_contig7180.15157.1 ID=mRNA_H-paniculata_contig7180.15157.1|Name=mRNA_H-paniculata_contig7180.15157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at H-paniculata_contig7180:2622..10414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGAGACAGCATTGAAACCAACGGATGTACCCAGCGTCGAGGAGAC
TCCCAAGGTCGACAAAACTGAAACGACTGGGGTGGAGCAGGCTGGGACCG
AGACCATGTCGGCGGTAGAGGGAGGAAAGAAGCCGGAGGCAGTGGTGAAG
GATTCAGAGCAGACACCGAAAGCGACTGATGGCGAAGAATCCGCGAAAGT
CTCGCCCGAACCAGCACAAGCAATCATTCAGGGAGATGCAGCGACGGCGG
CAGTTAACGATGTGACGCCGAAGAAGCCAATGAAGAAGGCAATCATAACC
GGTATCACAGGACAGGATGGATCGTACCTCGCGGAGTTCCTGCTTGAAAA
GATGTCGGAGACAGCATTGAAACCAACGGATGTACCCAGCGTCGAGGAGA
CTCCCAAGGTCGACAAAACTGAAACGACTGGGGTGGAGCAGGCTGGGACC
GAGACCATGTCGGCGGTAGAGGGAGGAAAGAAGCCGGAGGCAGTGGTGAA
GGATTCAGAGCAGACACCGAAAGCGACTGATGGCGAAGAATCCGCGAAAG
TCTCGCCCGAACCAGCACAAGCAATCATTCAGGGAGATGCAGCGACGGCG
GCAGTTAACGATGTGACGCCGAAGAAGCCAATGAAGAAGGCAATCATAAC
CGGTATCACAGGACAGGATGGATCGTACCTCGCGGAGTTCCTGCTTGAAA
AGGGATATGAGGTGCACGGTATCATCCGACGATCTTCAAGCTTCAACACT
CAGCGCATCGACCATATTTACCGCGACCGTCACGAAAGCGCCGTGCGCTT
GAAGCTACACTACGGGGACTTAACGGACTCCACCAACTTAATGCACATCA
TCTACGAGGGATATGAGGTGCACGGTATCATCCGACGATCTTCAAGCTTC
AACACTCAGCGCATCGACCATATTTACCGCGACCGTCACGAAAGCGCCGT
GCGCTTGAAGCTACACTACGGGGACTTAACGGACTCCACCAACTTAATGC
ACATCATCTACGAGGTACAGCCGGATGAAATCTACAACCTTGGAGCTATG
TCTCACGTGAAGGTTTCGTTTGAGATGTCCGAATACACCGCCGAGTGCGA
TGGCGTGGGTGTGCTGCGACTGCTGAACGCGATCCGGTCTGCTGGCTTAG
AGAAGAAGACGCGCTTGTATCAGGTACAGCCGGATGAAATCTACAACCTT
GGAGCTATGTCTCACGTGAAGGTTTCGTTTGAGATGTCCGAATACACCGC
CGAGTGCGATGGCGTGGGTGTGCTGCGACTGCTGAACGCGATCCGGTCTG
CTGGCTTAGAGAAGAAGACGCGCTTGTATCAGGCGTCAACCTCCGAATTG
TATGGCAAGGTGCAGGAGATCCCCCAGAAGGAGACGACCCCTTTCTACCC
TCGCTCGCCTTACGGTGTGGCCAAGCAATTTGGCTACTGGATGCTCATCA
ACTACCGCGAGGCGTCAACCTCCGAATTGTATGGCAAGGTGCAGGAGATC
CCCCAGAAGGAGACGACCCCTTTCTACCCTCGCTCGCCTTACGGTGTGGC
CAAGCAATTTGGCTACTGGATGCTCATCAACTACCGCGAGGCGTACGGAA
TGCATCTGACGAACGGTATCCTCTTCAACCACGAAAGCCCTCGCCGAGGC
CCTACCTTCGTCACCCGTAAGATCACCCGTGCCGTGGCTCGTATCCACCG
TGGTAAGCAGAAGACCATCTACTTGGGGAACCTGGACGCAAAGCGGCGTA
CGGAATGCATCTGACGAACGGTATCCTCTTCAACCACGAAAGCCCTCGCC
GAGGCCCTACCTTCGTCACCCGTAAGATCACCCGTGCCGTGGCTCGTATC
CACCGTGGTAAGCAGAAGACCATCTACTTGGGGAACCTGGACGCAAAGCG
CGACTGGGGCCACGCAAGGGACTACATCAAGGGCATGTGGCTCATGGTAC
AGAGGGATGAGCCCGACGATTACGTGCTCTCTACTGGGGAGTGCCACAGC
GTCAAGGAATTTGTCGAGGAGCGACTGGGGCCACGCAAGGGACTACATCA
AGGGCATGTGGCTCATGGTACAGAGGGATGAGCCCGACGATTACGTGCTC
TCTACTGGGGAGTGCCACAGCGTCAAGGAATTTGTCGAGGAGGCGTTCAA
GTACATCGGAACAGAGATAACATGGGTGGGCGAAGGGGTAGATGAATACG
GACATGCCAAGGGTGATTCTGAGAACGTCCTCGTCAAGGTTGACCCGCGC
TACTTCCGGCCTACGGAGGTCGAGCTCTTGCTGGCGTTCAAGTACATCGG
AACAGAGATAACATGGGTGGGCGAAGGGGTAGATGAATACGGACATGCCA
AGGGTGATTCTGAGAACGTCCTCGTCAAGGTTGACCCGCGCTACTTCCGG
CCTACGGAGGTCGAGCTCTTGCTGGGTGATTGCTCGAAGGCGAAGAGGGA
GCTGGGGTGGGTGCCAGAGATCACGTTCGAAGAGCTGGTCAAGGACATGA
TGAAGTCCGACATCGCACACGTGGATGCGGGCAATGAACACCTCTAAGGT
GATTGCTCGAAGGCGAAGAGGGAGCTGGGGTGGGTGCCAGAGATCACGTT
CGAAGAGCTGGTCAAGGACATGATGAAGTCCGACATCGCACACGTGGATG
CGGGCAATGAACACCTCTAA
back to top