mRNA_H-paniculata_contig7176.15153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7176.15153.1
Unique NamemRNA_H-paniculata_contig7176.15153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: D7FX61_ECTSI (Elongation factor P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX61_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 4.800e-112
Identity = 172/242 (71.07%), Postives = 196/242 (80.99%), Query Frame = 1
Query:   58 LGLLGSEAFVVPAATLRQGSFVWSQTSVRRTLPSPRWPSA----------VRALCMESTSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRANE 753
            LGLLG+EAFV+P+ATLRQGSF   Q   R      RW +A          V AL M ST+DFKNGMTID+DG+PCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGE +  AQVD++DLQYTY EGDMYYFMD+ T+EEVSI  K VGDKAGF +EGM L A +FKGK I+V++PKQM+LEVVETDPGEKGNTAQG +KPAK+ +GA +NVPLFIT GEKIRVD ++KKYM RA E
Sbjct:   19 LGLLGAEAFVLPSATLRQGSFAQQQQQQRGVT---RWTAAAGPRTARGGGVGALSMGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKVDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELSATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDIDSKKYMERAKE 257          
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: A0A6H5KN57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN57_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 3.420e-102
Identity = 149/187 (79.68%), Postives = 167/187 (89.30%), Query Frame = 1
Query:  193 MESTSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRANE 753
            M ST+DFKNGMTID+DG+PCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGE +  AQVD+LDLQYTY EGDMYYFMD+ T+EEVSI  K VGDKAGF +EGM L A +FKGK I+V++PKQM+LEVVETDPGEKGNTAQG +KPAK+ SGA +NVPLFIT GEKIRVDT++KKYM RA E
Sbjct:    1 MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELSATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVASGAMINVPLFITTGEKIRVDTDSKKYMERAKE 187          
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: A0A836CK22_9STRA (Elongation factor P (EF-P) KOW-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK22_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.500e-77
Identity = 120/187 (64.17%), Postives = 151/187 (80.75%), Query Frame = 1
Query:  193 MESTSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRANE 753
            M STSDFK G+TI++DG+P ++ EFLHVKPGKG+AFVR+K+KNLITGN++EKTFRAGE I+LAQV+RL LQ+TY +G  + FMDT +FEEV +    +GDKA ++ EGM LEA+ +  + IDVSIP+ MVL V +TDPG KGNTAQGGSKPA LE+G  + VPLFI  GEKI+VDTE +KYM R+ E
Sbjct:    1 MASTSDFKTGLTIEVDGAPVRVQEFLHVKPGKGAAFVRSKLKNLITGNTVEKTFRAGEPITLAQVERLTLQFTYDDGTNFCFMDTTSFEEVQMAKSILGDKADWLQEGMQLEALQWTDRIIDVSIPRTMVLTVTQTDPGVKGNTAQGGSKPATLETGVVLQVPLFINEGEKIKVDTEERKYMERSKE 187          
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: A0A7S2UXP2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXP2_9STRA)

HSP 1 Score: 229 bits (583), Expect = 4.860e-70
Identity = 113/188 (60.11%), Postives = 147/188 (78.19%), Query Frame = 1
Query:  184 ALCMESTSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRA 747
            AL M  TSDFKNG+TI++DG+P KI++FLHVKPGKGSAFVR+K+KNL+TGN+ EKTFRAGES+  A V++ +LQ+TY       FM+ +TFEE  I +  VGD   +++EG  +  + +  + IDV +PK + L+VVETDPG KGNTAQGGSKPAKLESGATVNVPLFI+ G++IRVDT  +KY+ +A
Sbjct:   41 ALSMLDTSDFKNGLTIEVDGAPVKIIDFLHVKPGKGSAFVRSKLKNLLTGNTNEKTFRAGESVQEAIVEKAELQFTYEADPNMAFMNMNTFEEELIPISMVGDNVDWIMEGSTVNCLKWNDQWIDVEVPKTLNLKVVETDPGVKGNTAQGGSKPAKLESGATVNVPLFISEGDEIRVDTIDRKYLGKA 228          
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: A0A7J7IJD2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJD2_9RHOD)

HSP 1 Score: 230 bits (586), Expect = 4.960e-70
Identity = 107/183 (58.47%), Postives = 141/183 (77.05%), Query Frame = 1
Query:  199 STSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRA 747
            S++DF+ G+TI++DGSP K++E LHVKPGKG+AFVRTK+KNL+TGNS+E+TFRAGES+  AQV+++++QYTY E   Y FM+  TFEE  I    VGD A ++  G ++    + GKPI+V +P  M LEVVETDPG +GNTAQGGSKPAKLE+G  + VPLFI +GEK++VDT    Y+SR 
Sbjct:   79 SSNDFRVGLTIEVDGSPFKVIEHLHVKPGKGAAFVRTKLKNLLTGNSMERTFRAGESVPEAQVEKVEMQYTYAEESDYVFMNMTTFEEERIPASTVGDTAKYLRTGQDVSVTKWNGKPIEVEVPTTMTLEVVETDPGVRGNTAQGGSKPAKLETGVVIQVPLFINVGEKVKVDTRTGTYLSRG 261          
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: L1J0T9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J0T9_GUITC)

HSP 1 Score: 225 bits (573), Expect = 4.320e-69
Identity = 108/185 (58.38%), Postives = 143/185 (77.30%), Query Frame = 1
Query:  199 STSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRANE 753
            S++DF+ G TI  DG+  K+LEFLHVKPGKG+AFVRTK+KNL TG +LEKTFRAGE +  A+V + D+Q+ YL+G  Y FMD ++FE  S++ + +GD   +M EG++++ + F  K +D+ IP+ MVLEV ET+PG KGNTAQGG KPA LE+GA V VPLFI  GEK++VDT +KKY+SRANE
Sbjct:    5 SSNDFRPGTTIQFDGNVYKVLEFLHVKPGKGAAFVRTKLKNLTTGGNLEKTFRAGEMVDGAEVIKSDVQFNYLDGTDYVFMDMESFETQSVSAEVLGDSTIWMKEGVDVKIVKFGDKILDIEIPQTMVLEVTETEPGVKGNTAQGGDKPATLETGAVVRVPLFIKTGEKVKVDTTSKKYLSRANE 189          
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: A0A7R9YPI6_DIALT (Hypothetical protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YPI6_DIALT)

HSP 1 Score: 224 bits (570), Expect = 1.640e-68
Identity = 112/196 (57.14%), Postives = 147/196 (75.00%), Query Frame = 1
Query:  163 RWPSAVRA-LCMESTSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRA 747
            RW +  RA + M +++DFK GMTI+ D  P K++EFLHVKPGKGSAFVR+K+KNLITGN++EKT+RAGES+  A+V++ D+QYTY EGD Y FMD  +FEE+ I  KA+ D+  F+ E  + +   + G+ I V +P QM L+V+ET PG KGNT QGG KPA LE+GA + VPLFI  GE++RVDT  KKY+SRA
Sbjct:    1 RWATQSRAAVSMLTSNDFKVGMTIESDAVPYKVIEFLHVKPGKGSAFVRSKLKNLITGNTMEKTWRAGESVGAAEVEKFDVQYTYKEGDQYVFMDMASFEEMRIDAKAI-DQIDFLKESGSAQVAKWNGQIISVELPNQMNLKVIETMPGVKGNTVQGGQKPATLETGAVIQVPLFIEEGEEVRVDTIEKKYLSRA 195          
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: A0A1C0V5J7_9CYAN (Elongation factor P n=2 Tax=unclassified Limnothrix TaxID=2632864 RepID=A0A1C0V5J7_9CYAN)

HSP 1 Score: 223 bits (568), Expect = 2.210e-68
Identity = 101/186 (54.30%), Postives = 146/186 (78.49%), Query Frame = 1
Query:  193 MESTSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRAN 750
            M S++DF+ G+TI+LD    +++EFLHVKPGKG+AFVRTK+KN+ TG+ +E+TFRAGE++  A +++ D+Q+TY++G+ Y FMD  T+EE++I+   +GD+  ++ EGM  + + + GK I+V +P  +VLEVVETDPG KG+TA GG KPAKLE+GATV VPLFI++GEK+R+DT   KY+ R N
Sbjct:    1 MISSNDFRPGVTIELDNGVWRVVEFLHVKPGKGAAFVRTKLKNVQTGSVVERTFRAGETVPQATLEKSDMQHTYMDGEQYVFMDMKTYEEMNISAAQIGDRVKYLKEGMEAQVVTWNGKVIEVDLPNTVVLEVVETDPGVKGDTATGGQKPAKLETGATVMVPLFISVGEKLRIDTREDKYLGREN 186          
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: A0A7R9UCL6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL6_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.190e-67
Identity = 107/189 (56.61%), Postives = 143/189 (75.66%), Query Frame = 1
Query:  193 MESTSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLE--GDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRANE 753
            M STSDFKNG+T+++DG+P KI+EF+HVKPGKG+AFVR+K+KNL+ G+ +EKT+RAGE + LAQV++ D+Q+TY +     Y FMD  +FEEV+     +G KA F+ +GM +  + +  K IDV +P+ MV EVVETDPG KGNT QGG+KPA L+ GA V VPLF+  GE I+VDT+  KY+SRA E
Sbjct:   39 MASTSDFKNGLTLEVDGTPVKIVEFMHVKPGKGAAFVRSKLKNLMNGSVVEKTWRAGEKVELAQVEKFDMQFTYFDDSSSSYMFMDVASFEEVACDADVLGSKASFLKDGMEVAGIKWNEKIIDVELPQTMVYEVVETDPGVKGNTVQGGTKPATLDGGAVVAVPLFVEQGEMIKVDTKEGKYLSRAAE 227          
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Match: A0A7V5I583_9BACT (Elongation factor P n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I583_9BACT)

HSP 1 Score: 220 bits (561), Expect = 2.490e-67
Identity = 103/183 (56.28%), Postives = 140/183 (76.50%), Query Frame = 1
Query:  199 STSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEVSITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEKGNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRA 747
            +++DF+ G+TI++DGSP K++E LHVKPGKG+AFVRTK+KNL+TGN++E+TFRAGE++  AQV++ + QYTY   + Y FM+  TFEE  +  + VGD A ++  G ++    + GKPI+V +P  + LEVVETDPG +GNTAQGGSKPAKLE+G  V VPLFI +GEKI+VDT    Y+SR 
Sbjct:    4 NSNDFRVGLTIEVDGSPFKVIEHLHVKPGKGAAFVRTKLKNLLTGNTMERTFRAGETVPEAQVEKFEAQYTYPAENEYVFMNMATFEEEHVPNEVVGDTAKYLRVGQDVSVTKWNGKPIEVEVPATLTLEVVETDPGVRGNTAQGGSKPAKLETGVVVQVPLFIEVGEKIKVDTRTGSYLSRG 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7176.15153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX61_ECTSI4.800e-11271.07Elongation factor P n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KN57_9PHAE3.420e-10279.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CK22_9STRA1.500e-7764.17Elongation factor P (EF-P) KOW-like domain-contain... [more]
A0A7S2UXP2_9STRA4.860e-7060.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7J7IJD2_9RHOD4.960e-7058.47Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
L1J0T9_GUITC4.320e-6958.38Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7R9YPI6_DIALT1.640e-6857.14Hypothetical protein n=3 Tax=Diacronema lutheri Ta... [more]
A0A1C0V5J7_9CYAN2.210e-6854.30Elongation factor P n=2 Tax=unclassified Limnothri... [more]
A0A7R9UCL6_9STRA1.190e-6756.61Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7V5I583_9BACT2.490e-6756.28Elongation factor P n=1 Tax=bacterium TaxID=186922... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7176contigH-paniculata_contig7176:1997..10479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.0
Seed ortholog evalue7.2e-90
Seed eggNOG ortholog2880.D7FX61
KEGG koko:K02356
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Elongation factor P, C-terminal
EggNOG OGs2QSVF@2759,COG0231@1
Ec32 ortholog descriptionelongation factor P
Ec32 orthologEc-10_004410.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons7
Model size1190
Cds size741
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.6754415-UTR-H-paniculata_contig7176:1996..20111622930870.6754415-UTR-H-paniculata_contig7176:1996..2011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7176 1997..2011 +
1691481489.459851-UTR-H-paniculata_contig7176:1996..20111691481489.459851-UTR-H-paniculata_contig7176:1996..2011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7176 1997..2011 +
1622930870.8693242-UTR-H-paniculata_contig7176:10045..104791622930870.8693242-UTR-H-paniculata_contig7176:10045..10479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7176 10046..10479 +
1691481489.5526156-UTR-H-paniculata_contig7176:10045..104791691481489.5526156-UTR-H-paniculata_contig7176:10045..10479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7176 10046..10479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.6970186-CDS-H-paniculata_contig7176:2011..20511622930870.6970186-CDS-H-paniculata_contig7176:2011..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 2012..2051 +
1691481489.4719017-CDS-H-paniculata_contig7176:2011..20511691481489.4719017-CDS-H-paniculata_contig7176:2011..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 2012..2051 +
1622930870.7263484-CDS-H-paniculata_contig7176:4087..41431622930870.7263484-CDS-H-paniculata_contig7176:4087..4143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 4088..4143 +
1691481489.481711-CDS-H-paniculata_contig7176:4087..41431691481489.481711-CDS-H-paniculata_contig7176:4087..4143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 4088..4143 +
1622930870.7467659-CDS-H-paniculata_contig7176:4967..50971622930870.7467659-CDS-H-paniculata_contig7176:4967..5097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 4968..5097 +
1691481489.492317-CDS-H-paniculata_contig7176:4967..50971691481489.492317-CDS-H-paniculata_contig7176:4967..5097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 4968..5097 +
1622930870.767876-CDS-H-paniculata_contig7176:5370..54891622930870.767876-CDS-H-paniculata_contig7176:5370..5489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 5371..5489 +
1691481489.5036702-CDS-H-paniculata_contig7176:5370..54891691481489.5036702-CDS-H-paniculata_contig7176:5370..5489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 5371..5489 +
1622930870.7816117-CDS-H-paniculata_contig7176:7367..75351622930870.7816117-CDS-H-paniculata_contig7176:7367..7535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 7368..7535 +
1691481489.5244153-CDS-H-paniculata_contig7176:7367..75351691481489.5244153-CDS-H-paniculata_contig7176:7367..7535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 7368..7535 +
1622930870.8257978-CDS-H-paniculata_contig7176:8144..82581622930870.8257978-CDS-H-paniculata_contig7176:8144..8258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 8145..8258 +
1691481489.534183-CDS-H-paniculata_contig7176:8144..82581691481489.534183-CDS-H-paniculata_contig7176:8144..8258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 8145..8258 +
1622930870.85173-CDS-H-paniculata_contig7176:9931..100451622930870.85173-CDS-H-paniculata_contig7176:9931..10045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 9932..10045 +
1691481489.5433662-CDS-H-paniculata_contig7176:9931..100451691481489.5433662-CDS-H-paniculata_contig7176:9931..10045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7176 9932..10045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7176.15153.1prot_H-paniculata_contig7176.15153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7176 2012..10045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7176.15153.1

>prot_H-paniculata_contig7176.15153.1 ID=prot_H-paniculata_contig7176.15153.1|Name=mRNA_H-paniculata_contig7176.15153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
MMRNMFLLSAALLALGLLGSEAFVVPAATLRQGSFVWSQTSVRRTLPSPR
WPSAVRALCMESTSDFKNGMTIDLDGSPCKILEFLHVKPGKGSAFVRTKV
KNLITGNSLEKTFRAGESISLAQVDRLDLQYTYLEGDMYYFMDTDTFEEV
SITVKAVGDKAGFMVEGMNLEAMFFKGKPIDVSIPKQMVLEVVETDPGEK
GNTAQGGSKPAKLESGATVNVPLFITIGEKIRVDTEAKKYMSRANE*
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mRNA from alignment at H-paniculata_contig7176:1997..10479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7176.15153.1 ID=mRNA_H-paniculata_contig7176.15153.1|Name=mRNA_H-paniculata_contig7176.15153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8483bp|location=Sequence derived from alignment at H-paniculata_contig7176:1997..10479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCTCTCTCCACGGATGATGCGAAACATGTTTCTTCTGTCGGCAGCCCT GCTAGGTGAGCATACTAGAGTATTGGTTGTCTTGTTGAATTATGTGTTCT CTAGCTTGATTTTCGAGGTCACCGGATGCTGTCGCATGCATCATGTTATG ATATAGATGACGGGCTTACGAGCCAAACATGCGGCAATCACGTGTTCATG TTTCTGTCGGGGTGGTCGAGCATGAATGCTAGTCCTAATTAGACACTGTA ACACGAGTGATCTTTATTGTCGTTGAAACGGGAAAGCCCGAAGGTTAGCA TGTATGATGCTTCTGTGGATTCTCAAGTGTTTCTCAGGTGTCATTTGTGT TGATGATCCTCGCTCCTGCTTACTCTCCCTACTATCTTTATGGTGTTCAC GTTTGGTTTCTCCAATTTGGTGTGTACCACAGATACTAGCGGTGCGATCA CAGAGCTTTATAGGTCTATCGAGTTTTGTCTGTACCCAAGATCCCTTCAC GCCTGCGACCCGTTGCTGACCATGACGTGTTTCGCGTACCCAGCCTCTAC CGGTAGTACAAGCGGAAATTTATACGAGGCCTATGGATGAATTTCCCCAC CTCTGGATGCCAGTTGATCCGTAATTGAGTTCGATGCTGGTGTGTTGCAA GTGTAGATCGCACAGCTCAGTGACTCGATAACTGCAAAAGGGTTCAAAGT TGGAACCTGCAGCCGTTGCTGCGAGAGTTACGGCCCCCGTGGGGACATAC TTCATGGAAAATTGTTCAGCAGCAGTAGCAGCAGTAGCGTTCACTTGTAA TGGACTTACTGTGGGCGTGAACCCATATATTAGCTCTGAAACAAATGTCG CAGCAAAGGCTTTCTTCCGTGTAGACGGCAAGTTCTTGGTAATATGCGGC ACGCCCCCCGACTTCCGCCATTTGTGTACTGGTGTGCAGTGTACAACATA GATGCGGTATTCAGGATTGGCGACTACATTAATGAAACAATGAAACAATT CCATATGCATCTGTAGTAATTCAGGATATCCATAAGTTCTCCGGGGGGCA CATAGCATTTGTTCGAGTTGCTTCATAGGCATTTGGGATGCCTATATATA TTCCGAATTGCTTCACAGGCAGGTTGCACGCTTGCATCAGCCCTCAATTA GACTGTAGCGCCAGGCGTCTGCTGCGAGGGCACGCGCAGGCAAAAATTTA TTGACACCGAGGCAAATAAATATCATCGTCTGGAAGCTGTGCCGCGAAAA ATATGTTACTCTGTCACTCACTGTCCAACCTTTTCGACGCCGAAGCCCCG AGAACTACTGCTACTGCAGGGACAGTACAGTCTGGCTTTAGTCTACAGGA ATGCGTCTTCCACCCGGCCACTTTGGAACCCGTTGGAAGATGACCACAAA AACGTATTTTTTGGAGCAAGGTATATTCACAGAACTTTCATAGATTATTT TACCGAAAATGTATTCATCGTTAATTCCAATTCGTGAAAACCGCACATAT GCTGTTCAACACTACAGAAACACAAACTCCCCTTAACACATCAGTACTCG AATAATCTATTCAATCTCACGGACAAGTGACTCCTCTCCCCCCCCTTGTT GGTTTAATTTGTGGATAAGTAATCCAGAAGCTTGGAGATGCTGAACATAC CTTCATTCTTTTTTACGGCTCTTGTCATGTTTTCTACAGTACTTTTAGAG TGTTTGCGCAAAACGAATTTCTTTTGCAAGTTTCGATTTGGTCCTGTACA GCTAACAGTGAGCTCCTCGTCGTGGACTCCAGTCCACCTATACTAACGTC TGATTACAAAACGAATTCCTTGTTACAGCCAAACGAATTTTGAAAAAAAA ATCCAATCGTGACGAGACGGGGAGGCAGGCCACTGTTGGCGATATACGAC CAAACCAATATTTGCGAAAACAAATCGTTTCGCGCAAACACTCTATTGAC TTGCTCTTTACTCTATATTACTCTTTCCAAACCGTATTATCGTATTAATG ATGTAGATCACATCCTGCTGGTGAAGTTGTCCTTGGCAATTGACCCGTAT GCCCACCCCTCCCTCCCTGTCCATGTGTCTCATGATCCTAGCCCTTGGGC TCTTGGGCTCGGAAGCCTTCGTTGTACCAGCGGCGACTCTTCGACAGGTA AGTTGAAATACCTGAGCAGCTGGTCGGCGGCCGAACCCAAGCAGGACAGA TGGATTTGTTAATCCCATGAGGGGTTGTCAAGAGGGTATTTTAGAGAAAC AAATACGGGCCGTTGCAGTCATTGTGGGCAGAATGATGTCAAGTACCTTT CGGGTGCTATGTGTGCTCTCTATGCTACACTCTACCTAAACAGTGCCCCC GCCCCCATCCATGTACTCATGTCATAGAGGTCGATTTCCCCTGTTTTTAA GGCAGGATTCGACAAGAATCGAGGTCAACGATGAAAATTCCTGTGGTATA GTTTGTGTTTTTTTCAATGGAAAGGTGCTGAGTTTAGCGATGGATGGTCC CCTCGTTTCTTCTTTCGGGCTGTATCGAGTGCTGGAGCGGGCAGGAGCGG TGCGAACCGCCGAACTGCCGTTGCTTGGCGTGTGTGATGTAACGGATGAG AGAACATTGCCACGCAAGGACACGTGTTCGTTTGCTTTTTGGAAGCCGTG TGATGTTTTGTTCACGTGTTGAGCTCAAAAGTTTATCTTGACAAAATTGC TGGATTGTTGAGTGTATAGAGAGCTCTGATGTTCTACAGTCCAACGTCGC CGACAGTACACTCAACGTCCCTGACCAAGCAGACCACCATTGGCATTGTA ATTATTTTGCTTACACAGACGCGGGTCTATGCTGTGGCCTCGACTTATTT TACCCCTCGTCCCCCGCCCTCTCCCCTCCCCACTCCGCCCGCCCGCCCTC ACATCCATCTCCACCTTTTGCTGATTCTCGTCCTAAATTTCGGGCGGGAA ACTCCCGCTCGACCTTGTTAGGGGTCTTTTGTATGGTCGCAGACATCGGT GCGACGAACGTTGCCTTCGCCCCGATGGCCCTCGGCGGTGCGCGCGTTGT GCATGGAGTCGACATCAGACTTCAAGAACGGGATGACTATTGACCTCGAT GGTAAGCGGCCTGTTTGCAGGTGTTGCGGGTGACGGATGCTACGGTTGGG TATGGAGTACGCGAATTTTTGTTTGTGTGTGCGCCCTTATGCTGTATTCT GTTGCTGACAATCTCTCAGTGAAGCGATGCGTTTTGTCTCTTCGTCACCC CCCGCCCCCAAACTCACGCCCCCCCACACACACAACGCTGCTCGTACCTA CTCTTTCGCCATTTGGGAACCACACCGTCCCGCGCGGCTGTTTTTGATTT CTTCGCGCTGCTACTTCATCATAGGTTCCCCCTGCAAGATCCTTGAGTTC TTGCACGTGAAGCCTGGGAAGGGATCAGCGTTCGTTCGTACAAAGGTCAA GAATCTTATCACGGGCAATAGCCTGGAGAAGACCTTCCGCGCGGTAAGGC TTGTATGCGCGTTCTGTGTGTCTTACTCCAGTATCGTCGAACCTCCACCC CCAGGATATATGCACAGTATCCCGATCGACTGTACACATATTATTAACAC GAGTGTTCTCTGCACGTCCTCTCGAGTCTATTCTGATCCGCATCCTTAAC ATGTACCCAAGGGTGCCCGTCGGATGTGGGCTGACGGCGTGCCGCTCTGA CTGTCTGCATTATATCCGAACACAGTGTAATGCACAAGTATTTCACCTCC CCCCAGAAGAAATATGAATACTCCGAGCATTCGCGACGATAGGTGAAAAT CTTTTTGCCCAAGGTTTTGTGAATGTGAGGGCAAATAGAATAAGTGTTGA CCCCCTATTTAGTCGTTTCACTTTCATTCGGAGCAGTCGTGGTATGATCC GGGGCACATGGCTATAATAAACGTGCTCGTGTTAAACTTTCAGGCGAGTA TATATATATTATTTATTTTTTCATCGCGAATGTGGTGATAACTGCTGTGT GGTATTGCGGAGTATCTCACACACGCAGGTTATTGTGTCCTGTTACTGGT TATGCTGTACAAATACTCTCAGAGGGGTACGGCTGGGGTGGTAGAAGTAG TCCTTGGCAATGGTCTGGTCTCTTGTATTAGCTGTATATTGCTATACGTC AGGAAAAGCCCTGGGTCGATACAAGTCTGACAGTTGGTGGGGTGGTTACA CTGTCCCTGCTTCCTGCTCCCAGCTCAAAATGAGGCTACATTACATAAAC CCCGGGATTGGGGATGGAACCGTCACATTAGACAATGACTAACGTCCCGC AATTAACATCTCATAACACGAGTGCTCGAAGTATTCGTATCGATGGTTGA AATATTTCCATTCCGCTATACTCTCTCAAGTTACCTGACAGTCTCAGAAA AACACATGTATTCGACAGGAACATAGCGTAGATTGATTGAAGACGAGAGG ATGCGATATCGTGGCCTGCCGCCAGGCCAAATTCTCGACAGGGTCGTTCA ATATTTTGTCATGTTTCGGAGGAGGGGGGGGGGGGGGGCGTTTGGTATGT ACTGCTAAACACTGATGTCTGCCGCTCACACCGAGTGATGTATTAGAAAC GCCGTGCCCGACATACAGACTTTACATGCACCCCTATACATATGTTCCAC GATCACGATGTGCATGGGAACGGAGATTGTTTATGTATTGCGTGCAGCAC GTGAAGGCCTTATAAAAATAGTACACCCCGTTCACCCACTGGACTTCATT CGTAAGCTAATTCATATTACCACAATTGATAGCTCTGTAAAGCTCATACC CGCTCTGTGTCACAAAGAAAAGTCGACTAAGTTTCTAAAGGCCCGTATCT CCATTTTAATTTTGTTTTTTTATCAACCAGATGCCAAACAACAACCCGAC CAAAAACGAGCGCTATATTTTGCCTCTTCTCGTATGTTTGCCAATGAGAA AACGTGATATATATTTAAAAAAAAAAAAAGATAAAAATGGTCCAAGATTA CCCCAAACCTGGAGCAGCCATTGTTTTTGATGAACCTATCGGAAAGCACT TCGAAATAAGTGCGTAGGAATGTATCAAATTTTATCTTTCCAACGATTCC AATCGCAGCCTCTGAACAGTCTTGGGTCTGGAAATATGAGCTGCCAAAAC ACAACTGATTTTACTTTCAGCACCGAGAAAGTATAATAACTTGATGATAC CCCCGTTGAGAGGTTGTACAGCTGATCCCCGATTTCATTTGTGTACATTG ACCAATCAAATTAGATCAAATTGGGGGGAGCCTTTGGCGTGCAGGAGTTC TTAGCCGACTCTCTTGGGCTTTTTGCTGTGCATCCCATCCCCGTGCCTTT GTTGTGTACGCACGACATCAGGGGGAATCCATCTCCTTGGCCCAGGTGGA CAGGTTGGATCTGCAGTACACGTACTTGGAGGGAGATATGTACTATTTCA TGGACACTGATACGTTCGAGGAGGTGTCGATAACCGTGAAAGCTGTGGGG GACAAGGCCGGGTTTATGGTCGAGGGCATGAACTTGGAGGTAAGGGGGAA AGGCACGTTACCAGGTTTGACAACTATTGTTTTCGAGGGGGGGATAGACA GCAGTGTGCGAGTTGATCGTCTTTTTTCATTCATTTCCCCTCATATATAA CGGTAGCCCCGTTATTACTAGATTGGGTGTATGTTACTAGGTATAGAGCC ATTGATACCGCTCGTCCACCAGCGCGTATACCGTTGGCAACAGGAGCAGC AGCAACAGCAGCGAGTCAAGGATATGAGTATATTTTTTGAGAGAATGGAC CTCGCCGGTTTTCCCAACCGCCCATGCGGCTCAAAAAACATCACACTGTT TTTGGTAGGATGCCCCCGACATCCCTAGGCCATATCAACAACTTGCCGAT GTTGCCTTGGTCGATCGAATCAGCAGCATGCGCGCCAAGCTTTCGATCTG TTTGCAAACGGAATGATACACTTGGGAAAACGCCCAGCATTCGCATTAGA GCAAGTTTTCATTGCGGCTCTATTGATTGTCCTCCGCTCCGTCCCTCCCC TCCCGTTATCTTGAAGCCCGTTCGCCCGAATCCTCTCTTCTCTTTGGTAC CTCGTCATTGTGTGCCCACCAATCCCCTCTTCGGACTGCTGCCGTCAGGC TATGTTTTTCAAGGGAAAACCCATCGACGTGAGTATTCCTAAGCAGATGG TATTGGAGGTGGTGGAGACTGACCCTGGGGAAAAAGGAAACACAGCGCAG GGAGGTTCAAAGGTGGGTGGGTATAAGCGATCTAATCTATTCTGCAGGAT CTTCCGGTGTTTGTTGCGGACGCTCTCTCACGTTTTCTTGTTGATATCGT AGCACCTGTGATTAGTGTTTTCCGAATACGACGTTGCTCTTTCAAACAAT GGGCAGGGTCTCTCGCTGTACATAGCTGTCTCCGGTAGTCGTTTAACGGT CGTGGCGTTTGTTGAGAGTTGGACATCATTGATTTGTGTTTTTGTCGTGA TGGATGGCATCCACAGGTTGTGTGCTCAGAGGAACCACGTTGAACAACCG ATAGTCTAGGTCCATTGAACGGACAGTGTTAGTTTTGTTCTCTTATCGAC CCTCACACCGAGGTTTGTCCCAGTATGTCGAGGTGACGTGGTCGTTCTGA TTTTCATGGATGTAGCCATTTTTGTCCTTCAAACGAGGCGTGTGGTTTCT ACTGGATGGTGCCTTGTGATGTTTGTTGGGAGCCCACCAATGTAAGGGCA AGGCTCGAAAGTTTTGTCATTTGCCCTTGAACGAACACAAAAATCTGGTT CAGGTTGAGCTGCCGCGTAAACACCTCATGGATTTACCTGGAAATTCCGC AGAATATATACAATAAAGGGAGGGCTTTAGATAACCGACCAACTGCGTGT GTGCCAACGATCTCGTCGGTGCTGGCTATGCTCAGTCTCTATCATACACG TTAATGTCGTCGAAATTTATGCAGGGATTGGAACTACCGCAGGTATTCCC CCAACAAGGTATTTTGCGTTTTCCTTTACTTTGAAATCTCCGTAGATGCC GATTATTTTTGCATCTTGGATGTCATACGTGAGAGCTGTGTGTGACGTGC AGTCCTCCTCAACTCGAAAAGGCAAGGCACTGCATTTCTGATCCTTTCGT TGGCAGCATGCGACTATCCGTAGATGAGAAACAAATCCAATATTTTTACG AGTTGGGGGCGTTATGTAGCTATCATGTCCTGCTAGCCTGCCGTGCGCTA TAGTAATCGTGACTATCGAAGAGCGCTGCTTTTCCCAGTACAAGAATACA TCACGCAGCTTGGGCCGTGGCTCTTCGTCGACTGGGCATGATGTACTTGT TTGGGAGAGAAGCACTCCACGTCTCTTGCCCGACCCGCTTAGCGAGACAT AAGACACACGGTCGAAACGTCCACTTCTTCTATGCAGCTTGATATGAAAT GCAAAGCTTGGCGGTTGTTCTCGGCGATGATTAGGGTACAGTGCAACACA GCAAGGTGCCAGAAAACAGGAAACTGGGCGGTGCCTTTATACACACAGCG CTTTTCCTGAACATCCTAAAAGAATGGCAGTTCAGTCCAATCGCCACGGA CATACAAAAAATCTCCGACGACTGCGCACTCCAATCTTTCTCCATCGAGA AATTTGCACACCTCCTGTGCCTAACCGCACAGTGTGTACCATCAATGTTT TATGTGTTTTCTTCGCGCCTAGGCGGTGTATTGCGAGTGTATTCTACGAG TGTGGAGGAAGCGAAAGCCCCGGCAACACCGAAAACAAGAGTTTGGACTA GAGGCTCCGGATACGCGAAGCCTTATGCTCTTGGTTTGTCGACTCATTAC ACCCCTCCTGTTCCGCTGTGCCTCATGACTTTGCTTTGTCGGTGATCAAC TGCTTTCGATTTTGATGTTTTGTTCTGTTGTGCAGCCGGCAAAACTGGAA TCTGGCGCGACCGTCAACGTCCCTCTTTTCATCACGATCGGAGAAAAGAT TAGGGTGGACACAGAGGCCAAGAAATATATGAGCAGAGCGAACGAGTGAT GAAATTAGTAAACTGTGGGGAAGTATTGTGGTAGTCTCTGGTTTTAAGGT GTTTGTTGCGTTTGTTTTTTTCAAAGAAATCATTGAAGCATCATCGCGCA TTTTTTTTTACCGCGGTGCCTCTCTTTCCATTTTTTAGTATACCATTTTG TTCCTCTGCACGATGCATTCTTCACCTTTGGTTTGTTAGGGTCGGTAGGC ATACTTGAGTGTTCTCACGTTGATCGTAGTACTTTCGTCAGGGAGATTGC TGTACTCGACCGGGCTATTGTTACTGCGACTTTAACTGTCCGGGCATTAT TGGGGCGTTGCTGTCGACTTCAAGGGTGGCGGCGTCGCATAAATTTATTT GGTAACAAGTCGTCTTGCGATACCCCCAGAGTGTCCTACTGTAGCTTTAG GTCGCCGGAGAAAAACGAGCTTGTTCTGCTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7176:1997..10479+

>mRNA_H-paniculata_contig7176.15153.1 ID=mRNA_H-paniculata_contig7176.15153.1|Name=mRNA_H-paniculata_contig7176.15153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig7176:1997..10479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCGAAACATGTTTCTTCTGTCGGCAGCCCTGCTAGATGATGCGAA
ACATGTTTCTTCTGTCGGCAGCCCTGCTAGCCCTTGGGCTCTTGGGCTCG
GAAGCCTTCGTTGTACCAGCGGCGACTCTTCGACAGCCCTTGGGCTCTTG
GGCTCGGAAGCCTTCGTTGTACCAGCGGCGACTCTTCGACAGGGGTCTTT
TGTATGGTCGCAGACATCGGTGCGACGAACGTTGCCTTCGCCCCGATGGC
CCTCGGCGGTGCGCGCGTTGTGCATGGAGTCGACATCAGACTTCAAGAAC
GGGATGACTATTGACCTCGATGGGGTCTTTTGTATGGTCGCAGACATCGG
TGCGACGAACGTTGCCTTCGCCCCGATGGCCCTCGGCGGTGCGCGCGTTG
TGCATGGAGTCGACATCAGACTTCAAGAACGGGATGACTATTGACCTCGA
TGGTTCCCCCTGCAAGATCCTTGAGTTCTTGCACGTGAAGCCTGGGAAGG
GATCAGCGTTCGTTCGTACAAAGGTCAAGAATCTTATCACGGGCAATAGC
CTGGAGAAGACCTTCCGCGCGGTTCCCCCTGCAAGATCCTTGAGTTCTTG
CACGTGAAGCCTGGGAAGGGATCAGCGTTCGTTCGTACAAAGGTCAAGAA
TCTTATCACGGGCAATAGCCTGGAGAAGACCTTCCGCGCGGGGGAATCCA
TCTCCTTGGCCCAGGTGGACAGGTTGGATCTGCAGTACACGTACTTGGAG
GGAGATATGTACTATTTCATGGACACTGATACGTTCGAGGAGGTGTCGAT
AACCGTGAAAGCTGTGGGGGACAAGGCCGGGTTTATGGTCGAGGGCATGA
ACTTGGAGGGGGAATCCATCTCCTTGGCCCAGGTGGACAGGTTGGATCTG
CAGTACACGTACTTGGAGGGAGATATGTACTATTTCATGGACACTGATAC
GTTCGAGGAGGTGTCGATAACCGTGAAAGCTGTGGGGGACAAGGCCGGGT
TTATGGTCGAGGGCATGAACTTGGAGGCTATGTTTTTCAAGGGAAAACCC
ATCGACGTGAGTATTCCTAAGCAGATGGTATTGGAGGTGGTGGAGACTGA
CCCTGGGGAAAAAGGAAACACAGCGCAGGGAGGTTCAAAGGCTATGTTTT
TCAAGGGAAAACCCATCGACGTGAGTATTCCTAAGCAGATGGTATTGGAG
GTGGTGGAGACTGACCCTGGGGAAAAAGGAAACACAGCGCAGGGAGGTTC
AAAGCCGGCAAAACTGGAATCTGGCGCGACCGTCAACGTCCCTCTTTTCA
TCACGATCGGAGAAAAGATTAGGGTGGACACAGAGGCCAAGAAATATATG
AGCAGAGCGAACGAGTGACCGGCAAAACTGGAATCTGGCGCGACCGTCAA
CGTCCCTCTTTTCATCACGATCGGAGAAAAGATTAGGGTGGACACAGAGG
CCAAGAAATATATGAGCAGAGCGAACGAGTGA
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