mRNA_H-paniculata_contig7175.15152.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7175.15152.1
Unique NamemRNA_H-paniculata_contig7175.15152.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7175.15152.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 5.010e-56
Identity = 100/229 (43.67%), Postives = 147/229 (64.19%), Query Frame = 1 
Query:   10 QIPINANNATTFGYVIDKFLIIDLRLQFRWRNSPGFWGIFASALQHAHNHTTQRSARITRLGKNAINSVRVIPDQHFHNQ-EIPNGRYIPTTVGGGREDPFITQVYVDDAINVEVQTSLDERRCLQASASLASDHYRLLGDRLEHHPQLLSPVKMSDWDAHLEVLGWTIDTAALTIAYPPHKIAKVKQLMYEWPPSRKQATITEVQKLIGKLLHVSQGVRPGKFFVRQM 693
            ++ ++   +  F YV +  +I+D  LQF W +SP  WG+ ASA++HAHN+TT  SA IT  G++A + V V P +    +  +P     P   GG   + F  + YVDDA+ VE+++ L+ RRCL+A+ S ASD +RL G R    P L +  K + WD  +E+LGW IDT ALTI+    K+AK++ ++ EWP  R+ AT+TEV+ L+GKLLH+ + VRPGKFFVR++
Sbjct:  534 KVSVDVKESPKFSYVFEDLVIVDRCLQFGWTSSPALWGVCASAVEHAHNNTTVTSAVITSEGRDATSHVCVEPRRENEVRGRLPPEYVFPRDSGGMIRNNFWVRTYVDDALFVELESFLEGRRCLRATRSFASDSFRLFGTRNSGEPPLFAREKTTSWDTRMEMLGWVIDTVALTISVSQEKVAKMRAMLAEWPVERRVATVTEVRSLLGKLLHLCEVVRPGKFFVRRI 762
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BLAST of mRNA_H-paniculata_contig7175.15152.1 vs. uniprot
Match: A0A225WA20_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA20_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.370e-6
Identity = 45/134 (33.58%), Postives = 64/134 (47.76%), Query Frame = 1 
Query:  301 DPFITQVYVDDAINVEVQTSLDERRCLQASASLASDHYRLLGDRLEHHPQLLSPVKMSDWDAHLEVLGWTIDTAALTIAYPPHKIAKVKQLMYEWPPSRKQATITEVQKLIGKLLHVSQGVRPGKFFVRQMSQL 702
            + F    +VDD I VE+          QA A+L      +LG R       ++  K S W + L  LG   +T   T++ P  K+AK +Q +     SR+ AT TE+QKL+G L HV   VR  K F + +  L
Sbjct:  265 ESFSGYEWVDDHILVELDVG---DHLHQAEATLRHTMLAILGSRS------MNESKFSGWSSELMALGLLWNTVNQTVSIPTDKVAKAQQRVRAML-SRRSATKTELQKLLGSLRHVGTCVRTSKPFFQLLHSL 388
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BLAST of mRNA_H-paniculata_contig7175.15152.1 vs. uniprot
Match: A0A448ZCT6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCT6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.990e-6
Identity = 40/133 (30.08%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:  319 VYVDDAINVEVQTSLDERRCLQASASLASDH-YRLLGDR---LEHHPQLLSPVKMSD--WDAHLEVLGWTIDTAALTIAYPPHKIAKVKQLMYEWPPSRKQATITEVQKLIGKLLHVSQGVRPGKFFVRQMSQ 699
            +YVDD   + VQ +   RR ++ +   + D  +R L  +       P  +  +K  D  W     +LGW IDT   TI+ PPH++A++++L+    P++K A + +  KL+G+L  +S  + PG   +  M Q
Sbjct: 1118 IYVDDFCGL-VQGNQWTRRAVKRALLHSLDKVFRPLDKQDTPYRQEPASIKKLKKGDATWTTSKVILGWLIDTTTKTISLPPHRVARLQELLQAIQPTQKYAKVADWHKLLGELRSMSLAL-PGSLGLFSMLQ 1248
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BLAST of mRNA_H-paniculata_contig7175.15152.1 vs. uniprot
Match: K0RUC8_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUC8_THAOC)

HSP 1 Score: 57.0 bits (136), Expect = 9.140e-6
Identity = 34/117 (29.06%), Postives = 61/117 (52.14%), Query Frame = 1 
Query:  319 VYVDDAINVEVQTSLDERRCLQASASLASDHYRLLGDRLEHH---PQLLSPVKMSD--WDAHLEVLGWTIDTAALTIAYPPHKIAKVKQLMYEWPPSRKQATITEVQKLIGKLLHVS 654
            ++VDD I +  Q   +ERR  +       D  R L +    H   P  L  ++  D  W     +LGW IDT A+TI  PPH++ ++ +++   P ++K+ ++ +  K++G+L  +S
Sbjct:  760 IFVDDFIGL-AQDLTNERRVRRILLHAIDDVIRPLSESDNVHRREPVSLKKLRQGDCSWSTVKLILGWVIDTVAMTIHLPPHRLERLGEILASIPATQKRTSVKKWHKVLGELRSMS 875
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7175.15152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE5.010e-5643.67Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A225WA20_9STRA3.370e-633.58Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A448ZCT6_9STRA3.990e-630.08Uncharacterized protein (Fragment) n=1 Tax=Pseudo-... [more]
K0RUC8_THAOC9.140e-629.06Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7175contigH-paniculata_contig7175:54..755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog4792.ETI54779
Hectar predicted targeting categoryother localisation
EggNOG OGs2D1NN@1,2SIQK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size702
Cds size702
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930870.6126215-CDS-H-paniculata_contig7175:53..7551622930870.6126215-CDS-H-paniculata_contig7175:53..755Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7175 54..755 +
1691481489.447603-CDS-H-paniculata_contig7175:53..7551691481489.447603-CDS-H-paniculata_contig7175:53..755Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7175 54..755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7175.15152.1prot_H-paniculata_contig7175.15152.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7175 54..755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7175.15152.1

>prot_H-paniculata_contig7175.15152.1 ID=prot_H-paniculata_contig7175.15152.1|Name=mRNA_H-paniculata_contig7175.15152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
AFRQIPINANNATTFGYVIDKFLIIDLRLQFRWRNSPGFWGIFASALQHA
HNHTTQRSARITRLGKNAINSVRVIPDQHFHNQEIPNGRYIPTTVGGGRE
DPFITQVYVDDAINVEVQTSLDERRCLQASASLASDHYRLLGDRLEHHPQ
LLSPVKMSDWDAHLEVLGWTIDTAALTIAYPPHKIAKVKQLMYEWPPSRK
QATITEVQKLIGKLLHVSQGVRPGKFFVRQMSQL
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mRNA from alignment at H-paniculata_contig7175:54..755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7175.15152.1 ID=mRNA_H-paniculata_contig7175.15152.1|Name=mRNA_H-paniculata_contig7175.15152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=702bp|location=Sequence derived from alignment at H-paniculata_contig7175:54..755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTTTCGGCAAATCCCAATCAATGCCAACAACGCTACGACATTCGGTTA
CGTCATTGACAAGTTCCTAATCATTGACCTTCGACTTCAATTCAGATGGC
GCAATAGCCCTGGGTTCTGGGGTATTTTCGCATCCGCATTACAACACGCA
CACAACCACACGACCCAACGATCCGCCCGCATTACCCGCCTCGGAAAGAA
TGCAATCAACTCTGTTCGTGTCATTCCAGATCAACATTTTCATAATCAAG
AGATCCCGAACGGGCGCTATATTCCAACCACGGTAGGTGGCGGTAGGGAG
GATCCGTTTATCACCCAGGTCTATGTCGATGACGCCATTAACGTAGAAGT
CCAAACCTCTCTCGACGAAAGAAGATGCTTACAGGCATCGGCATCGCTGG
CATCGGACCACTACCGATTGCTGGGTGATCGATTAGAACACCATCCACAA
CTTTTGTCCCCAGTAAAGATGTCAGATTGGGACGCACACCTAGAAGTCTT
GGGATGGACGATCGATACAGCCGCGTTAACCATCGCATATCCGCCACACA
AAATAGCGAAAGTCAAACAGCTCATGTATGAATGGCCGCCGTCACGGAAA
CAAGCCACAATCACCGAAGTGCAGAAATTAATCGGTAAGCTACTCCACGT
ATCTCAAGGGGTAAGACCAGGCAAATTTTTCGTACGGCAGATGTCGCAGC
TA
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Coding sequence (CDS) from alignment at H-paniculata_contig7175:54..755+

>mRNA_H-paniculata_contig7175.15152.1 ID=mRNA_H-paniculata_contig7175.15152.1|Name=mRNA_H-paniculata_contig7175.15152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig7175:54..755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTTTCGGCAAATCCCAATCAATGCCAACAACGCTACGACATTCGGTTA
CGTCATTGACAAGTTCCTAATCATTGACCTTCGACTTCAATTCAGATGGC
GCAATAGCCCTGGGTTCTGGGGTATTTTCGCATCCGCATTACAACACGCA
CACAACCACACGACCCAACGATCCGCCCGCATTACCCGCCTCGGAAAGAA
TGCAATCAACTCTGTTCGTGTCATTCCAGATCAACATTTTCATAATCAAG
AGATCCCGAACGGGCGCTATATTCCAACCACGGTAGGTGGCGGTAGGGAG
GATCCGTTTATCACCCAGGTCTATGTCGATGACGCCATTAACGTAGAAGT
CCAAACCTCTCTCGACGAAAGAAGATGCTTACAGGCATCGGCATCGCTGG
CATCGGACCACTACCGATTGCTGGGTGATCGATTAGAACACCATCCACAA
CTTTTGTCCCCAGTAAAGATGTCAGATTGGGACGCACACCTAGAAGTCTT
GGGATGGACGATCGATACAGCCGCGTTAACCATCGCATATCCGCCACACA
AAATAGCGAAAGTCAAACAGCTCATGTATGAATGGCCGCCGTCACGGAAA
CAAGCCACAATCACCGAAGTGCAGAAATTAATCGGTAAGCTACTCCACGT
ATCTCAAGGGGTAAGACCAGGCAAATTTTTCGTACGGCAGATGTCGCAGC
TAGCCTTTCGGCAAATCCCAATCAATGCCAACAACGCTACGACATTCGGT
TACGTCATTGACAAGTTCCTAATCATTGACCTTCGACTTCAATTCAGATG
GCGCAATAGCCCTGGGTTCTGGGGTATTTTCGCATCCGCATTACAACACG
CACACAACCACACGACCCAACGATCCGCCCGCATTACCCGCCTCGGAAAG
AATGCAATCAACTCTGTTCGTGTCATTCCAGATCAACATTTTCATAATCA
AGAGATCCCGAACGGGCGCTATATTCCAACCACGGTAGGTGGCGGTAGGG
AGGATCCGTTTATCACCCAGGTCTATGTCGATGACGCCATTAACGTAGAA
GTCCAAACCTCTCTCGACGAAAGAAGATGCTTACAGGCATCGGCATCGCT
GGCATCGGACCACTACCGATTGCTGGGTGATCGATTAGAACACCATCCAC
AACTTTTGTCCCCAGTAAAGATGTCAGATTGGGACGCACACCTAGAAGTC
TTGGGATGGACGATCGATACAGCCGCGTTAACCATCGCATATCCGCCACA
CAAAATAGCGAAAGTCAAACAGCTCATGTATGAATGGCCGCCGTCACGGA
AACAAGCCACAATCACCGAAGTGCAGAAATTAATCGGTAAGCTACTCCAC
GTATCTCAAGGGGTAAGACCAGGCAAATTTTTCGTACGGCAGATGTCGCA
GCTA
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