mRNA_H-paniculata_contig7168.15143.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7168.15143.1
Unique NamemRNA_H-paniculata_contig7168.15143.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7168.15143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7168contigH-paniculata_contig7168:671..8580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930869.0441751-CDS-H-paniculata_contig7168:670..6961622930869.0441751-CDS-H-paniculata_contig7168:670..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7168 671..696 +
1691481488.8788948-CDS-H-paniculata_contig7168:670..6961691481488.8788948-CDS-H-paniculata_contig7168:670..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7168 671..696 +
1622930869.0643077-CDS-H-paniculata_contig7168:8402..85801622930869.0643077-CDS-H-paniculata_contig7168:8402..8580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7168 8403..8580 +
1691481488.8900268-CDS-H-paniculata_contig7168:8402..85801691481488.8900268-CDS-H-paniculata_contig7168:8402..8580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7168 8403..8580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7168.15143.1prot_H-paniculata_contig7168.15143.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7168 671..8580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7168.15143.1

>prot_H-paniculata_contig7168.15143.1 ID=prot_H-paniculata_contig7168.15143.1|Name=mRNA_H-paniculata_contig7168.15143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
LKVQWTVPSVRVAFRGVICPLSFDKLSAAGQGHLDRVKHMIFELNASTAA
CIPTNCSGMQNFMCCRP*
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mRNA from alignment at H-paniculata_contig7168:671..8580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7168.15143.1 ID=mRNA_H-paniculata_contig7168.15143.1|Name=mRNA_H-paniculata_contig7168.15143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7910bp|location=Sequence derived from alignment at H-paniculata_contig7168:671..8580+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAAGTACAGTGGACGGTGCCCAGGTAGGTTTTTACTATAGAAAAGGA
CGGGCGAGCTTGACACTGCTTCAAGAAATCTTGCAGAGGGATGATAGTAG
AGAGAGAGACGCTCCGCTACAATTTATGTAGCCTACCCCACAACCAATAG
AAACGTTCGTTACGGCTGGTCTAACGCTCACTATCTGTACAGATGTAGCA
TTAGTTGGTAGGGCCCGATATCCCCAAATAATCAGTGCATCACAACGCAT
AGACCGATGTTTCAGGGGTGTGACTATGCTTGATGCGGGATGTACAAACG
TGAATGATTCACAAAATTCACACTGCCGATGAGGTTCGACCCGTTTCAGT
GCCATGCGGAGTTTCGGAGCAGAAATAAGTGTGATTACTGGACGGACTGA
CCGTACTGTTTGCTGGGGCAATGTGCAATTCGGCCCAAATGCCGGGTACC
ACAAATGGGATAAGGCTCGCGCTGACTGTGAAAGTCTGGAGACTGATTTG
TTTTTTCGAGAAGCCACTTGGGGCTGGCTCGTACTTGAGTGCTCCGCTAT
GTAGGTTGGGGATGTGAAGACTTTCATGAAATTGGTTACGTTCTGTTCGC
AAGCACGTCTGTGCCACCCTCATTTAGATGCATCGTATCAGGCAGACGAA
CACACACACAGTATCGTGCCCAGTAAACTTTTTGGGGAGCAAGTTATGAA
GACCGCGAACTATTGGTGTATAGCACAGTATAATTGTCACTTTGATGATG
AAGCAACAGACGCCATGCTGTACAGGCAAGTGACTGTGATGGGGCTTTCC
GCTCCCTGTACTTTCGGTCTCTGTCGTTTTGCCGCCAAACAATGCAGATG
GTATAGGTTGTAGTATTTAGGTGTCACTATACTCGTTTAAAAAATGCCGG
CTCGATATAAGGTGCCATTTGTCTGGTGACACCAATCTTCCCTATATCTG
GTAGCTGGTACCTTATATAAAGCCAACACCATGAATATGGGGTCCGAGAC
ACTGCGTGGCCCTGTACAAGGTAACCCCACGTTCTTTTCAGCAGTTCAAA
TCCACGCCACAAATCGTTTCAGTCGTACTTAAGAATATTACGCATCTGAA
CAGCACCGTTGCCGATCCCACCGGTCACAAATGTCACAAATGTCGGAGGA
CATGTGAGCTGTACCTGCATGGCTTTTTTGGCGACCAGGACCCTTTCAGC
GACAGCGAAATGCGTCGCACTTCCCCTACAGTACCAGGATAGAGGATTGT
GCATCCTTTTCATATTGCATAAAATCGCTCGTGATAGTCACGGATCTCAT
CTAGTGGTTGAAGAGTGATCTCCGGTAACGTCGCCATGAGTAGGTAGAGT
ACGTTTGATATACAGTCAGTAAGCCATGACAAACTAAAGCTCTGCTGTAT
GCAGTCCTTGAGTGCTCCACACTCTTGTTCGTCCTGTCCTCTTTGGTCGC
AATAATTGCTGGTAGTACAGCGCAGAATATATGATGGTAAGTCGTCATGC
ACTATGCCCTCCCTGGAATTGGAGTGATTATCTGTAAGAATTACCAGGAC
CTTATTCGCTACCCTTATGCAAAGTGCTGATGTAGGTCCAGTTTCTTTAT
AAAATGTATCTGCCCTGTATAGAGTATCTTGAATGTGCTGGCAATACGGT
AACTTTTCCAGGGGGCACGTAATGTGATACAGGCGTCAGAAACAGGCAGC
ACGCAGCTCCACAAGATATACACTACGGATTCTTTGCAATGTGTACCCAC
ACGCCGTTACGTAAACCTCACCCACAATATCTCAGCGCCTTACTCGTTGC
TCGTGCACATGAGAGGTGTATGGTCTGTGGTACAGACAGTACCATTACAG
TCAGTCGGTAAAAACAGTACTTCAATCTACTATCAAGATACATCACAATG
TGACCTTCAGTTCGAAATTTCAAAGTTTTGCCTCTTGTGCTGTCTCTATG
CAGATCGTGTCAAACGAGCCTCGTCATATTTTCAGGCAATAATTGACTCC
CGCGCGTCATTTTGTTTTCAGGGGCTATCGCGGGTCCACAAAATTGGACA
GGGTGAGCATGTTTACTTGATTTATGTGTAGGCGTCCTGATCTCGCGCGG
TGGGACAGGACAACAATCGCGTCCCGTCCCGCAAGGGTGCCGTGATTCCG
TGATAACCCTGGACTTATTTCGAACGGCGGCGTGTACTGACGATGTGAAC
GTGAAGGTCGCGAGGCAAGCAGAAGCGCAAAATCGACCTTATTTTCAGTG
TAGCTAGGTCGCACTGTTGGATATTATGGGACGTTATGGCGACCGGACCA
AATTTCTAGAATTTCCGGTCCTATTTGTTTCGTCTCGACGTCCAATCCGG
CGACCATTTGTCCGAATAAGTTGGTCTCGGAACTAGAGAGGACTAAATCC
ATGATCATTTAAAGTGAGTAACGCGGAGCGCTGATAGCGCAGCAACAGGA
TCGATCACTTGAAGTCAATTTAGTGGAGATGACTGAATAGTCACATGAAC
AAGACAAAATGCCATCATTCGAAATTACAGGGCGCGGGGACATGAATGTG
GGGTTCGATTAAATAATTCTCGATTTCCCAAGTTGAGCTCTAAATCTACA
GCCGCTTGAGTAAAAGTGCCTTTCCGAGGGTTTTGTCTAGATTTGTGTGT
GGTCGGTTTACGCTTGTACGACTTTTTCGGTCGGAGCGAAGCCAATCGAT
ATACCAATAAATGGTCGATCTATCGATCTATCCGCAACGTGTCGCTGCGA
GCGAAGAACGAGCGGGCGAGCACTTGAGCGAGAACAAAACGGCCCCCGCC
GGCTCGTGAGCGGTCTTCGCGGGAGGCAGAGAAGATAGGCATTCGGGTTC
GATCTTGTTTCAACGAGCTACAAATTCCGTTGGATGATGATTGCAGCATG
CGGGACAGAGCATTGGAATATTGATCGACGCCCACCAATGTGTTATGTAT
ACTCCCTCCGTTCCTCAAGTCTGCGACGTTATGATTTCTCATTTCTTGTG
TAGGTCGTTTTTTCACGAATACGAAGAGTTTTTCGTTTATGTATGGCTTG
AAATGAACCTATGGACATGAATTATAAGAACTTTTATTTCGTTCTCGCAT
TCTGTCCCGAAATACTTGCAAAAAAATCGCGAAAAGGGAAACTAAAAAAA
CGGCCCTCTTCGGCTCCATTTTAAGTGGCTGCACTACGCCCGGCGGCGGA
CAAAGCGCCCCCGTATGGTCACACAACATCCCAGCACCTCGCCAATACGA
CTCACGTGCAGCCCCCAGACCGTCTGCGGCGCGAGTTTAGTAACCAACAT
TACCACTCCGGCGAGTCGGGCATCTTTAGCCCAGAGTCTATTAGCCTGGG
GTAAAAATTGCGGGGTGAGCGAGGAACGTCGAAACGCATTGGCCGTGCAA
TACGCTTTAGCGCTACCTCCCGGTAAGAAACGGCTCCTAAAGGCATTGGG
ACACAGTTGGAGCAGTTTGGAGTTGGCGACAAATACCCCAGACAACTGTG
GGCGCGTGTACAAAAACAATTAGATCATGGTAACACCCTTTCGATAAGGT
CAGCGTCACGAAGCGGGCGGCCGTCGGACTTCACATCAACAAAAGTACTC
CATGACTCCAAGGGTCAACGCCGTGCATTGAACCTCGACCCTCGATCAAC
TGTCTGCCAAGCTATTACGGAGGAACATAGTTGTTGGTACCTCGCCCAGA
TCTGAGCCAATATTGAGTGAATTTTAAGAAGCAAAGGCGCAAACGAACCG
CATGGGCAATTGCGTTGCGGAATATATATATTTATATATATGGAAGTTAG
TATGCAATATTTTTCGCTAATTTCTGGTTCTATCCTTACGCCGCGACAGG
TGAACGAAATGTCTCACATTTGGCCGTAGAGCGTCCGTTTTGATGGCGTG
TCCAACAAACTATGGCTTGGACTAATGGCATGGACAATGCGGTCATGTAC
AAGAAGAAAATTCACAAGTCGAATTTGCTGACATGAACTTATGCCATATT
TTCTCGCAATGTCACCGCTAACCGTAGCGCGGTGCTCGTGGGCCAAAACT
TAAAACTCTCGCCATACCTCACTCATTCGATGGCGGTTCTCCGCCCACGA
TGGCTTGGACGAACGGCTGGGTCAATGCGGTCACGTACGATAGAGTAAAA
GACAACAAAAAGATGTTCGTGTTGAAGTGCTTTAAATATTTGAATATCAT
CGCCTTTAACGTTGTCCCGGCGCTCGTGAGAAATGTTGATCGCGGACAAT
TTTAATATCGCCGTCGTCATTGTCCTCAAATGATCCGGTTCCAGCTATAT
GTAACAGATATTCACAATACAATAACAGTACTGCCGCCTCTGGAATATAC
AGTACGCCCTACAAACATCCAACCTAACCTAGCTTAACACAAACACGATC
CACCACCCGCCCAGACTTTGCCCCTACCCAACCCTACTATAGCGGATAAC
ATACAGTAAAATGTTTCGTGTTAAACCATTGTATCCCCGTCTGCCGCATC
CCTCATACCCACAAACCCTGAAACGTTCGCGGAGATGTCAAGCGACTCCT
GTAGCATGACCCCATCGTCCCAGCGACAGCCTTATACCAGGGGGCGCTGA
AGTCATGGTCGTCCGCTACCTTAAGGGTGCCCATTTTTTCATCGAGTATG
CTATCGTTACGGACCCACGTATTCATGTCATTAGCCGCGTGCGAAACAAG
TTTCCCACGGATTGCTGCCTTCCAACTGCCCACCAGCCCTTCCCACTGGT
CATCCCTATACCAATCCTTCCGAACCTGCTCCCACACTTGCTTCATGGCA
CGCTTTGTGTCGAAGTTAAAGCTGACATACTGCTTTCCTTGCTGCCAGAA
TAACTCAATTGGCTGAGAAGACGGCAAGTAGAGAGGTGTCTGAATCAATT
GCCACCCTTTGCTCTTCATGAACACCTCAACTTTGTCTCAAAAACTTGTC
GGGAAACTTGAGCTGAAAGAACACCCGAGTGGCCAACGCTACCTCCGCGC
AGCTGACACCGTTGCCACACTTCGAGTTCAAGTTCGGGAATGATCCACTC
TTGGGTACTTCGAAATTGTGAAGCACAACTTTCTGTCGACCTTTACCGTC
CTTTCCAAACGCCGAACTGTGATTATTTTGGCCTTGTACTTCTGCAACAG
TGCTGTATTGTGCGCCTTGATGTTCGTTCAGGCACCCCGACCTCGGCGTC
ATATCCGTGGTCGTGCGATGCGTTGTCGATAACAAGAATCATCTATTTTA
ATGGAAAAGCAGCGTTGAAAGCCGGCTCAGGGCGATTCTCGAGCCACCCC
ATGAAAATTTTGTTGTTCATGGCAGCCTGGTACTCCACTTTAGCGTGTTT
GGCCTGTCAGAGCATCTCCGCGGTTTTCTCTGTTCCCATCGCCCATCCTC
ATCCGTGCAACAATATGAGTAGGCAGAGCCGTGCAGTTGGTGTCGAAAAC
TCTCATCCATGTACACAGTCACTGCCGTTTTTGCTTCCTCTTGAGTAAGA
GCGCCAGAAAACGCTCCAGAAAATGTCTAATACGAGCCTTCCTGGCATTG
AGTCGCGGAGGGATTTGAATCCTTCCCCGACGGCGTCTATAGCCAAGCCT
ATACAACAGCCCTTATATCGCATTGTTCGAGATGTCGAAATCACAGTCAA
CCCTTACCCATTCGCCTATTGTCCGCCGGAAAACTTGCTGCCCGTCTTCG
TGCTTGCCGCTGGTAAAAGCACGAAGCTTCGCTGTTTTGCAAATCGGTGA
GGACAGTCCGCCTGTCTTCTTCACTTGCCACGCCTCGCCCCTCCGCCGAT
GTTGTCTTGAGCGACTTCTGATCCTCCCATAAAGTGCGAACCTGTTCACC
GCGCAGGCGGAAAGAGCAAAGGTTACAATTTCTCCCAAAACACAATTGGC
ACTGCGTAACATGACACACGCAACAAGCTCCAAAATATTGAAGATTCTCA
CTATATAGAGCGTCCGCAACTTCAGAGTATGGAGAGCACAACCATCGAGC
ACGTTACTTCGCTGAGGTGCAATCCGGTCAGTATTTTTCAAGTAAAGTCG
ACACAATAGATAGTACAAGGCACGCTGCACAGTAAAAAAACACTTGGACC
TCGTGTGTAAAAACTGTTCCGAAATGGTGTCTGTACACTACTCAGTATTC
TGCTGTACTGTACTCACTACAGATGTCATGTACCTTGAACACCTTCTTTG
GTCCAATGCGCATCACCCTGGCGGTCTCCCTTACAGCAGGGTTTCGGTCC
ATACCTGACTGGACGAGATTGAAGTTCACCAAAAGGATAGCCCGGGGCTG
TGACGCATCCATAGCCGAAATCCCCTCGCGGTGTGGCGCTGTCGTGTGGA
GACGAACAAGCTCCTGTTCCCTCAGTACCTTCTCGCATGTGTCAACGCCT
CAGTCACCCGTTTTCCATAGAATTCGCGTGAATGGCTTGCATGGCCAAGA
GTGTCGTATTGGTGGAGATCGGCGTAGTGATCAGAAACAATATGCAGCGA
GCAAGATCCCACATCGGCAGTTCCTCAGCGGACAAACATGACAAGAAACT
GTTTGTAGGGGGACCTAAATCGTGGGTGCGCATTTTGTCATAACTAAGGT
AGTCTCCGCCGACACCACACTCCAGGTCACTAATCCAGTTCACGTGAGTC
CTATGGGATGTGGGTGACTGAGGGATGTCCGACTTGAAGGCCTCGAGCAC
CAACCCGTGAACTGTACGCTTTGTCCAGAGAAAAACATGAATTCTACTGA
AAATATTAGTGACTATTCCGAGCATGGTTGATTCAAAATCTTGACGCCGG
CGTTTAAATCCAGATGTGCTCGTTGTGCTATTTGATGTATCACTTGGGGT
GATATCGCCAACTTTTTTGAGTTTTTATCCGAACCGACTAAATTCCGCTC
ACCGATCATCTTATTGCCTGTGTGTGTTTTGCAATGAAGTGAGTGAGATT
ATCCACTGTCTCTTCAACAGTGTGTGTTTTAGTATGGCCCAATATTGCTT
CTGACATGCCGTTTTCCTATAGCGACCACCATGCAAAAAACGTGAAGTCC
GCAAGTTGCATTTGATAAGGCAGAAGCTCCCGCTAAGTTTGTATTTGGAA
GGTATCAGCAGTGTGCGTGATTTTTCGAAATGAACAGATTCTATTATGAT
TGCTGGCATGTTTTAGGCATGAGTTCAACATGTATCTGCCTCAAGGTTCA
GCACGAGCGCGTTTGGTCTGTATGTGCCCTGCAAAATGTACGGCTGCAGT
GAGTACTATAAAAACGGACAAACAGTACAAGAGAACACTTCATTTTTTGT
GCCCGCGCATGGTGCAACTCGGGTCATCCAAATATTCGGGTCTTTTTACC
AGGGGTTTTCACACAGGCGTTTTCAACGATTTTTACTCGTTTTTTTCGGC
GGAATGGATTCCAAAGTCTTGAGGATCCCGAGATTATTGTTTTTGTATTC
AAAGTGAGGACGCCGTAAACATCCATTGTTTATAAAGATTTACGGTCTGA
AACATTTTCACTGAATTTACCGCCATGTACATTGTTAGATGTCCATCACT
GTACGTACAAATGAAACGATGCAATCGACTCTACGATGAGAAGGTCGCAG
ACCAGGCCTCTGCCGTCGGGTCTGTAATAACCAACCACAGGTGCGCTTCG
TTCCGACCTCTGCCTGGCGCTTTGATGCCGCTACTCTCTCGTCGCACACA
TGTTCCATCACTTGTGGCATGGATGCGCACAGTGTACGAGTTGCGTTTCG
TGGTGTTATTTGCCCTCTCAGCTTCGACAAACTCAGCGCCGCTGGGCAGG
GGCACCTTGATCGCGTGAAACACATGATCTTCGAGCTTAACGCCTCTACC
GCGGCCTGTATCCCAACTAACTGCAGCGGCATGCAGAATTTTATGTGCTG
CAGACCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7168:671..8580+

>mRNA_H-paniculata_contig7168.15143.1 ID=mRNA_H-paniculata_contig7168.15143.1|Name=mRNA_H-paniculata_contig7168.15143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig7168:671..8580+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAAGTACAGTGGACGGTGCCCAGCTCAAAGTACAGTGGACGGTGCCC
AGTGTACGAGTTGCGTTTCGTGGTGTTATTTGCCCTCTCAGCTTCGACAA
ACTCAGCGCCGCTGGGCAGGGGCACCTTGATCGCGTGAAACACATGATCT
TCGAGCTTAACGCCTCTACCGCGGCCTGTATCCCAACTAACTGCAGCGGC
ATGCAGAATTTTATGTGCTGCAGACCGTGATGTACGAGTTGCGTTTCGTG
GTGTTATTTGCCCTCTCAGCTTCGACAAACTCAGCGCCGCTGGGCAGGGG
CACCTTGATCGCGTGAAACACATGATCTTCGAGCTTAACGCCTCTACCGC
GGCCTGTATCCCAACTAACTGCAGCGGCATGCAGAATTTTATGTGCTGCA
GACCGTGA
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