mRNA_H-paniculata_contig7161.15137.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7161.15137.1
Unique NamemRNA_H-paniculata_contig7161.15137.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 372 bits (954), Expect = 2.690e-115
Identity = 205/401 (51.12%), Postives = 258/401 (64.34%), Query Frame = 1
Query:   13 EVRVALQKMNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQRRIDTLE---------GGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYSGGNSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGTET----KFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGMDKKITSRMQKCVN 1176
            E+  AL ++ R+K+PG DGVP DFL L        + MG  V+ M+N++WK+RVIP    EST+V IP KG+MT M N R ISLM++VLK+L++II+ R     E          GFR REEC+ QA CLLEICQRRK   ++ +L FVDLKKAYDTVP EALF KL  YGVRG +L +IR +Y  S I+VR     S    L RGVRQ CPLSP LFN+ I+DILDGAE  GV   G +     + PGLLFAD LV ++PTR KL  M++H++  M  NE  A I KC VMAI G    RLR    RW+L GE LPIVE Y YLG+ F R L V      +L   +K V  +TP+L    IPVPLK +VVR +++P++L GAE++GM   IT+R+Q  VN
Sbjct:  504 EMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLFNIFINDILDGAESLGVPEVGNQLERAPRIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAI-GHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVN 903          
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 259 bits (663), Expect = 2.080e-74
Identity = 146/415 (35.18%), Postives = 236/415 (56.87%), Query Frame = 1
Query:    1 VSDSEVRVALQKMNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQRRIDTLE---------GGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYS---GGNSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGT--------ETKFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTE--RLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGMDKKI-TSRMQKCVN 1176
            +   E+  AL+++N  KA G DG+  + L+L  Y PD P   G +++ ++N +W ++ +P+ W  S +VSI  KG++T+M N R IS+M +++K+LM ++ QR  D  +         GGF   EEC +Q   + +I  RR+     T+  F+DL+KAYDT+PHE LF KL   G+ G +L +++ +Y  ST+ V+     G  S P+ + RG+RQ CP SP LFN+ I+DI DG E  G  + G           + PG LFAD  V + P+   L  M  H ++  + +     ++KC VMA+ G  ++   LR +A RWQLGGE++P+V EYRYLG     +L + +    R+  +++ V  +   L    IP+ ++ SV+++ ++P +  G E++GMD     +R+Q  +N
Sbjct:  397 IGGGELCKALKRLNNNKASGVDGITAETLKLAIYAPDSP--FGKSLLELMNNIWTTKCVPKQWCSSAVVSILKKGDVTVMDNYRGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILFNIFINDIFDGIEGLGCEVPGCVDMLDSRQPLRVPGQLFADDTVGLAPSLDNLHAMFAHFSQWAEDHYMGFGVKKCGVMAL-GRHSDVVALREQADRWQLGGERVPVVSEYRYLGALINSDLSMRNIVGDRVNKSRRAVEALDSVLGGRDIPINVRTSVLKTCILPVLTYGCEVWGMDSTSGVNRLQTILN 808          
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 239 bits (610), Expect = 1.380e-66
Identity = 153/407 (37.59%), Postives = 215/407 (52.83%), Query Frame = 1
Query:   13 EVRVALQKMNRYKAPGEDGVPVDFLRLL---------------DYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSI-PTKGEMTIMGNCRRISLMSSVLKILMVIIAQR-----------RIDTLEGGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYSGG---NSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGT--ETKFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGM 1137
            EVR AL  M   KAPG DGV  DFL+L                + HP  P  M   + +++  MW    +P +W  + +V I   +G+   M N R ISL+  VLK+L  II +R           R+   + GFR REEC+     L E+ +RR+I    ++L F+DLKKAYDTVPH ALF KL   GVRG  L +I+ +Y  S++S R       N  P  L RG+RQ CP+SP LFNV I+DI+D   + GV + G    T   GLLFAD LV ++    KL +  + +T      E Q  + KC +M I    +        +W L G+ +P+VEEY YLG     +L +  +   R+  AKK +  ++PFL   SIP+ +++ V  S+V P  L GAE++G+
Sbjct:  682 EVRAALLSMKNGKAPGCDGVSADFLKLCCGQSLEEEDDDGDDAETHPPNP--MAAVLFKLLCAMWAQETVPSVWNMAEVVPIFKNRGDQLEMENYRGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKEQAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQNLYRHSSVSFRAPSDCCRNISPAPLRRGLRQGCPMSPLLFNVFINDIIDEIRELGVHVPGLPRSTTLGGLLFADDLVLLSDHPDKLQQSLDAITHWADKWEMQFGVSKCAIMGIDMPISHLSSLREDQWTLQGQPVPLVEEYVYLGTLLHNSLDMKESIRYRVGRAKKALQSVSPFLSCRSIPLHIRSRVFMSMVCPVALYGAELWGL 1086          
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO)

HSP 1 Score: 233 bits (594), Expect = 1.590e-65
Identity = 139/397 (35.01%), Postives = 215/397 (54.16%), Query Frame = 1
Query:   13 EVRVALQKMNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQR--RIDTL-------EGGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYSGGNSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGTETKFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGMDKKITSRMQKCVN 1176
            EV  AL+  ++ KA G DG+P++F ++L    ++ +  G+ V ++I  ++    +PE W E+ IV +P KG++  M N R ISL++++ K ++ II ++  RI T        + GFR  EECI Q  C  EI +RR +  + T   F+D KKAYD VPHE LF KL  YG  G +L ++ E+Y     SVR     S       GV+Q CP SPTLFN+ I++IL+G    GVGI G   + PGLLFAD  V    +   +V     L       +   +I KC +M            E +  +     +P VE YRYLGI   RNL + +    R E A++ +  I P +    IP+P++ ++++S+++P    G+E+YGM  + T+ +Q+ ++
Sbjct:  215 EVLRALEHSSKGKATGTDGIPIEFYKVLQRDKNRESPFGNFVFQLITEIYAQAKVPEQWNEAMIVPVPKKGDLHNMDNYRGISLINTLCKEVVKIITEKLNRICTTNKILRDEQAGFRKLEECIAQTTCFYEIVKRRSLKGKPTMALFLDFKKAYDKVPHEGLFAKLRGYGFSGRILDFLIELYRNPKASVRIGDERSDTFNYQMGVKQGCPASPTLFNLYINNILEGIT--GVGI-GNGEQVPGLLFADDAVVFAESYDDMVHNMEILEDWCDKWKMDLNISKCGLMVFNS-------NEQRAIKYKNANIPTVERYRYLGIPINRNLDLKTVINDRKEKAQQALMIIRPLISRIEIPLPIRVTLIKSVLIPTATFGSELYGMSSQRTAPIQRVID 601          
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG)

HSP 1 Score: 221 bits (562), Expect = 2.010e-60
Identity = 135/398 (33.92%), Postives = 210/398 (52.76%), Query Frame = 1
Query:    1 VSDSEVRVALQKMNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQR--RIDTL-------EGGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYSGGNSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGTETKFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGMDKKITSRMQK 1167
            +S +E+  AL+     K+PG DG+P +  +++ Y  +  + +   ++R+I  +W +  IP+    S ++ IP KG++    N R ISL+ ++ K+L  IIA+R  +ID         + GFR REEC+ QA  L E+ +RRKI   +T++ F+D  KAYD VPHEAL  K+   G+ G +   I  +Y    + VR     S  V  N GVRQ CP SP LF++ I+D+LDG +  GV I G E   PGLLFAD  V +  +  +L      LT   Q  E Q + +KC +M I              + + G+ +  V+EY+YLG+ F       S      E  +K    +  FL    +P  ++A+++R++++P +  G EI+GM     S +QK
Sbjct:  393 LSWAEICAALKSTPNNKSPGSDGIPSEVWKMVQYEDEPTSPLAKLILRLITGIWDAEKIPKQLDPSVVIPIPKKGDIRDPNNYRGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLRKIKTAGIGGKLYRVIEALYRSPKMCVRVGDRLSKTVDYNCGVRQGCPASPMLFDIYINDLLDGIK--GVKIPGIEECIPGLLFADDAVVLAESPAELQIALEKLTAWSQKWEMQINQDKCGIMGINSS-------TGMLFTIMGKPITQVKEYKYLGVVFNNKWNNLSALQNNKENERKAFQSMYYFLSRKDVPTAMRAALIRTVLIPILCYGCEIFGMSAVRCSTLQK 781          
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: A0A1R1YJD8_9FUNG (LINE-1 retrotransposable element ORF2 protein n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YJD8_9FUNG)

HSP 1 Score: 220 bits (561), Expect = 4.090e-60
Identity = 138/398 (34.67%), Postives = 206/398 (51.76%), Query Frame = 1
Query:   10 SEVRVALQKMNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQR------RIDTL---EGGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYSGGNSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGTETKFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGMDKKITSRMQKCVN 1176
            +E+  AL+     K+PG DG+P +  + + +  +  + +   + R+I  +W +  IPE    S +V IP KG+M    N R ISL+ ++ K++  IIA+R      + D L   + GFR REEC+ QA  L E+ +RRKI   +T++ F+D  KAYD VPHEAL  K+   G+ G V   I  +Y    + VR  G  S  V  N GVRQ CP SP LF++ I+D+LDG +  GV + G E   PGLLFAD  V +  +  +L      L+      E Q + EKC VM I G            + + G+ +  V EY+YLG+ F       S      E  +K    +  FL    IP  ++ S++R++++P +  G EI+GM    +  +QK  N
Sbjct:  770 AEICDALKSTPNKKSPGYDGIPSEAWKTVQHEIEPTSPLAKVLFRLIKEIWDNESIPEQLDPSVVVPIPKKGDMREPNNYRGISLIPTLSKVVSKIIARRLCKIENKYDILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLKKIRACGIGGKVYRIIEALYRSPKMCVRIGGQLSKLVEYNCGVRQGCPASPILFDIYINDLLDGIK--GVKVPGVEEVIPGLLFADDAVVLAESPAELQIALEKLSAWSNKWEMQINQEKCGVMGING-------NTGMLFTVMGKPINQVTEYKYLGVLFNDKWNNLSALKNNRENGRKAFHSMYYFLTKKDIPTAMRVSLIRTVLIPILCYGGEIFGMSTTRSGTLQKVAN 1158          
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG)

HSP 1 Score: 214 bits (544), Expect = 5.720e-58
Identity = 131/398 (32.91%), Postives = 209/398 (52.51%), Query Frame = 1
Query:    1 VSDSEVRVALQKMNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQR--RIDTL-------EGGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYSGGNSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGTETKFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGMDKKITSRMQK 1167
            +S +E+R AL+     K+PG DG+P +  +L+    +  +     ++R+IN +W +  IP+    S +V IP KG+M    N R ISL+ ++ K++  II++R  +ID         + GFR REEC+ QA  L E+ +RRKI   +T++ F+D  KAYD VPH+AL  K+ + G+RG +   I  +Y    + VR     S  V  N GVRQ CP SP LF++ I+D+L G +  GV I G +T+  GLLFAD  V +  +  +L      L+      E + + EKC +M I              + + G+ +  V EY+YLG+ F       S      +  +K    +  FL    IP  ++ +++R++++P +  G EI+GM    +  +QK
Sbjct:  455 LSWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKNSGIRGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLGGIK--GVKIPGIDTEIAGLLFADDAVVLADSPAELQIALEKLSAWSHKWEMKINQEKCGIMGINSS-------TGMLFTVMGKHIEQVTEYKYLGVVFNNKWNNLSALKSNRKNGRKAFHSMYYFLSRKDIPTAMRVALIRTVLIPILCYGGEIFGMSATRSGTLQK 843          
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: A0A1R1XKG1_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XKG1_9FUNG)

HSP 1 Score: 214 bits (545), Expect = 6.190e-58
Identity = 134/397 (33.75%), Postives = 210/397 (52.90%), Query Frame = 1
Query:   13 EVRVALQKMNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQR------RIDTL---EGGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYSGGNSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGTETKFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGMDKKITSRMQKCVN 1176
            ++R A++     KAPG DG+P +  +L+    +  + +   +V ++  MW S  IPE++  S IV IP KG+     N R ISL+ +++KIL  I+AQ+      + + L   + GFR REEC+ QA  L E+ +RRKI    T++ F+D  KAYD VPHEAL  KL    + G +   I  +Y    I VR     S     +RGVRQ CP SP LF++ I+DIL+  +  G+ I     K  GLLFAD  V    +  +L      +++  +  E Q +  KC V+ I G  T+ +      + +    +P V+EY+YLG+ F       S      E A + +  +  FL N   P+ ++A+++RS+++P    G EI+GM +   +++QK V+
Sbjct:  902 DIRRAIKVTPNNKAPGIDGIPSELWKLVQEEKNPESYLSKLLVELLLKMWNSAHIPEIFNTSIIVPIPKKGDPRDTNNYRGISLIPTLVKILAKIVAQKLNELDFKYNLLVKEQAGFRSREECVSQATVLYEVVRRRKIKGIPTWIGFIDFAKAYDRVPHEALLSKLKSQKIGGQLHRVISALYKSPRICVRVGNSISRKFEYSRGVRQGCPASPMLFDLFINDILENIK--GINIPTINKKIKGLLFADDAVVFADSPSELQIAFERVSEWAEKWEMQVNASKCGVIGI-GQSTKMI------FMMQNGIVPQVKEYKYLGVMFNDKWNHVSAIKNNAEAASRAISGMYYFLENNKTPIAIRATLIRSVIIPIATYGGEIFGMSQSRINKLQKVVD 1289          
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 214 bits (544), Expect = 8.890e-58
Identity = 133/395 (33.67%), Postives = 203/395 (51.39%), Query Frame = 1
Query:   10 SEVRVALQKMNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQR--RIDTL-------EGGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYSGGNSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGTETKFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGMDKKITSRMQK 1167
            +E+  AL+     K+PG DG+P +  +L+    +  +       +++N +W+   IP+    S IV IP KG+M    N R ISL+ ++ K+L  IIA+R  +ID         + GFR REEC+ QA  L E+ +RRKI   +T++ F+D  KAYD VPH+AL  K+   G+ G +   I  +Y    + VR     S  V  N GVRQ CP SP LF++ I+D+LDG +  GV + G +T+ PGLLFAD  V +  +  +L      LT      E Q + EKC +M I              + + G+ +  V EY+YLG+ F       S      +  +K    +  FL    IP  ++ ++VR++++P +  G EI+GM       +QK
Sbjct: 1082 TEICAALKSTPNNKSPGSDGIPSEVWKLVQNEEEPTSPFAKLFSKLVNKIWEDEKIPQKLDPSVIVPIPKKGDMRDPNNYRGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKSSGIGGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLDGIK--GVKVPGIDTEIPGLLFADDAVVLAESPAELQIALEKLTVWSLKWEMQINQEKCGIMGINSS-------TGMLFTIMGKPIKQVAEYKYLGVVFNDKWNNLSALKNNRDNGRKAFHSMYYFLSRRDIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQK 1467          
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Match: A0A1R1X4V9_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X4V9_9FUNG)

HSP 1 Score: 213 bits (541), Expect = 1.600e-57
Identity = 136/398 (34.17%), Postives = 203/398 (51.01%), Query Frame = 1
Query:    1 VSDSEVRVALQKMNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPELWTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQR------RIDTL---EGGFRCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKLHHYGVRGSVLGYIREVYGRSTISVRYSGGNSPPVRLNRGVRQECPLSPTLFNVLISDILDGAEQWGVGIDGTETKFPGLLFADALVCMTPTRKKLVKMNNHLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEEYRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVVRSIVVPQML*GAEIYGMDKKITSRMQK 1167
            +S  E+  AL+     K+PG DG+P +  + + +  +  +     + R+I  +W +  IPE    S +V IP KG+M    N R ISL+ ++ K++  II +R      + D L   + GFR REEC+ QA  L E+ +RRKI   +T++ F+D  KAYD VPHEAL  K+   G+ G V   I  +Y    + VR  G  S  V  N GVRQ CP SP LF++ I+D+LDG +  GV I G +   PGLLFAD  V +  +  +L      LT      E Q + EKC VM I              + + G+ +  V +Y+YLG+ F       S      E  +K    +  FL    IP  ++A+++R++++P +  G EI+GM       +QK
Sbjct:  433 LSWDEICAALKSTPNKKSPGYDGIPSEAWKTVQHEIEPTSPFAKVLFRLIKEIWDTESIPEQLDASVVVPIPKKGDMREPNNYRGISLIPTLSKVVSKIIVRRLGKIDNKYDILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLKKIRAGGIGGKVHRIIEALYRSPKMCVRIGGQLSKLVEYNCGVRQGCPASPILFDIYINDLLDGIK--GVKIPGIDKGIPGLLFADDAVVLAESPAELQIALEKLTAWSLKWEMQINQEKCGVMGINSS-------TGMLFTIMGKTIAQVSDYKYLGVVFNDKWNHLSALQNNRENGRKAFHSMYYFLSRKDIPTAMRAALIRTVLIPILCYGGEIFGMSALRCGTLQK 821          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7161.15137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE2.690e-11551.12Reverse transcriptase domain-containing protein n=... [more]
A0A7S1SJ55_9CHLO2.080e-7435.18Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A3M2C3P5_9GAMM1.380e-6637.59Reverse transcriptase domain-containing protein n=... [more]
L7JX89_TRAHO1.590e-6535.01RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A1R1Y7R2_9FUNG2.010e-6033.92Putative RNA-directed DNA polymerase from transpos... [more]
A0A1R1YJD8_9FUNG4.090e-6034.67LINE-1 retrotransposable element ORF2 protein n=1 ... [more]
A0A1R1YAQ4_9FUNG5.720e-5832.91RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1XKG1_9FUNG6.190e-5833.75RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1YP44_9FUNG8.890e-5833.67LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A1R1X4V9_9FUNG1.600e-5734.17Putative RNA-directed DNA polymerase from transpos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7161contigH-paniculata_contig7161:10390..11565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue5e-39
Seed eggNOG ortholog45157.CMT010CT
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1176
Cds size1080
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7161.15137.1prot_H-paniculata_contig7161.15137.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7161 10450..11529 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930868.6051636-UTR-H-paniculata_contig7161:10389..104491622930868.6051636-UTR-H-paniculata_contig7161:10389..10449Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7161 10390..10449 -
1691481488.7352405-UTR-H-paniculata_contig7161:10389..104491691481488.7352405-UTR-H-paniculata_contig7161:10389..10449Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7161 10390..10449 -
1622930868.6336946-UTR-H-paniculata_contig7161:11529..115651622930868.6336946-UTR-H-paniculata_contig7161:11529..11565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7161 11530..11565 -
1691481488.755211-UTR-H-paniculata_contig7161:11529..115651691481488.755211-UTR-H-paniculata_contig7161:11529..11565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7161 11530..11565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930868.62139-CDS-H-paniculata_contig7161:10449..115291622930868.62139-CDS-H-paniculata_contig7161:10449..11529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7161 10450..11529 -
1691481488.7470617-CDS-H-paniculata_contig7161:10449..115291691481488.7470617-CDS-H-paniculata_contig7161:10449..11529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7161 10450..11529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7161.15137.1

>prot_H-paniculata_contig7161.15137.1 ID=prot_H-paniculata_contig7161.15137.1|Name=mRNA_H-paniculata_contig7161.15137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=360bp
MNRYKAPGEDGVPVDFLRLLDYHPDQPTIMGDAVVRMINVMWKSRVIPEL
WTESTIVSIPTKGEMTIMGNCRRISLMSSVLKILMVIIAQRRIDTLEGGF
RCREECIVQAGCLLEICQRRKIHTQNTFLTFVDLKKAYDTVPHEALFGKL
HHYGVRGSVLGYIREVYGRSTISVRYSGGNSPPVRLNRGVRQECPLSPTL
FNVLISDILDGAEQWGVGIDGTETKFPGLLFADALVCMTPTRKKLVKMNN
HLTKSMQANETQADIEKCRVMAIKGFRTERLRREAQRWQLGGEQLPIVEE
YRYLGINFTRNLKVSSTTVGRLEGAKKFVGKITPFLRNTSIPVPLKASVV
RSIVVPQML*
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mRNA from alignment at H-paniculata_contig7161:10390..11565-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7161.15137.1 ID=mRNA_H-paniculata_contig7161.15137.1|Name=mRNA_H-paniculata_contig7161.15137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig7161:10390..11565- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATCCGATTCTGAAGTGAGAGTAGCACTTCAGAAGATGAACAGATATAA AGCCCCGGGGGAGGATGGAGTGCCAGTCGACTTCCTAAGACTCTTGGATT ACCATCCGGACCAACCAACTATCATGGGAGACGCGGTAGTGAGAATGATC AATGTCATGTGGAAAAGCCGAGTCATACCGGAACTGTGGACAGAGTCTAC CATAGTCTCTATCCCAACGAAGGGTGAGATGACAATCATGGGTAACTGTC GCAGGATATCTCTCATGAGTTCGGTACTCAAGATATTAATGGTGATCATA GCCCAGAGACGGATCGACACGTTAGAAGGGGGCTTTCGGTGTAGGGAAGA ATGTATAGTACAAGCAGGATGCCTCCTAGAAATCTGCCAGAGAAGGAAAA TTCATACACAAAATACCTTCCTAACATTTGTAGACCTTAAGAAAGCATAT GATACCGTCCCACACGAAGCTCTTTTTGGTAAATTACACCACTATGGTGT CCGAGGTAGTGTGTTAGGGTATATCCGAGAGGTATATGGAAGAAGCACTA TTTCCGTTCGGTATAGCGGGGGCAACTCGCCCCCAGTACGCCTGAATAGA GGAGTGCGGCAAGAGTGCCCACTGTCCCCGACTTTGTTCAATGTGTTGAT TAGTGACATCTTGGACGGAGCCGAGCAGTGGGGCGTCGGAATCGATGGTA CAGAAACTAAGTTCCCGGGACTTCTATTCGCGGACGCCTTAGTTTGTATG ACCCCCACTCGCAAAAAGTTAGTCAAGATGAACAATCACTTGACTAAATC GATGCAAGCAAACGAAACGCAAGCAGATATTGAAAAGTGTAGAGTCATGG CCATCAAAGGGTTCCGCACGGAACGACTAAGAAGAGAAGCACAAAGATGG CAATTGGGGGGGGAGCAGTTACCAATAGTCGAGGAGTATCGGTACTTGGG GATTAACTTCACCAGAAACCTGAAGGTAAGTAGTACGACGGTAGGCAGGT TAGAAGGAGCGAAGAAATTTGTGGGCAAAATAACTCCGTTCCTTAGGAAT ACGTCCATCCCCGTGCCCCTAAAAGCCTCAGTTGTTCGATCGATTGTAGT CCCACAGATGTTGTAAGGAGCGGAAATTTACGGGATGGACAAGAAGATCA CCTCGCGGATGCAAAAGTGCGTAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig7161:10390..11565-

>mRNA_H-paniculata_contig7161.15137.1 ID=mRNA_H-paniculata_contig7161.15137.1|Name=mRNA_H-paniculata_contig7161.15137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at H-paniculata_contig7161:10390..11565- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAGATATAAAGCCCCGGGGGAGGATGGAGTGCCAGTCGACTTCCT
AAGACTCTTGGATTACCATCCGGACCAACCAACTATCATGGGAGACGCGG
TAGTGAGAATGATCAATGTCATGTGGAAAAGCCGAGTCATACCGGAACTG
TGGACAGAGTCTACCATAGTCTCTATCCCAACGAAGGGTGAGATGACAAT
CATGGGTAACTGTCGCAGGATATCTCTCATGAGTTCGGTACTCAAGATAT
TAATGGTGATCATAGCCCAGAGACGGATCGACACGTTAGAAGGGGGCTTT
CGGTGTAGGGAAGAATGTATAGTACAAGCAGGATGCCTCCTAGAAATCTG
CCAGAGAAGGAAAATTCATACACAAAATACCTTCCTAACATTTGTAGACC
TTAAGAAAGCATATGATACCGTCCCACACGAAGCTCTTTTTGGTAAATTA
CACCACTATGGTGTCCGAGGTAGTGTGTTAGGGTATATCCGAGAGGTATA
TGGAAGAAGCACTATTTCCGTTCGGTATAGCGGGGGCAACTCGCCCCCAG
TACGCCTGAATAGAGGAGTGCGGCAAGAGTGCCCACTGTCCCCGACTTTG
TTCAATGTGTTGATTAGTGACATCTTGGACGGAGCCGAGCAGTGGGGCGT
CGGAATCGATGGTACAGAAACTAAGTTCCCGGGACTTCTATTCGCGGACG
CCTTAGTTTGTATGACCCCCACTCGCAAAAAGTTAGTCAAGATGAACAAT
CACTTGACTAAATCGATGCAAGCAAACGAAACGCAAGCAGATATTGAAAA
GTGTAGAGTCATGGCCATCAAAGGGTTCCGCACGGAACGACTAAGAAGAG
AAGCACAAAGATGGCAATTGGGGGGGGAGCAGTTACCAATAGTCGAGGAG
TATCGGTACTTGGGGATTAACTTCACCAGAAACCTGAAGGTAAGTAGTAC
GACGGTAGGCAGGTTAGAAGGAGCGAAGAAATTTGTGGGCAAAATAACTC
CGTTCCTTAGGAATACGTCCATCCCCGTGCCCCTAAAAGCCTCAGTTGTT
CGATCGATTGTAGTCCCACAGATGTTGTAAATGAACAGATATAAAGCCCC
GGGGGAGGATGGAGTGCCAGTCGACTTCCTAAGACTCTTGGATTACCATC
CGGACCAACCAACTATCATGGGAGACGCGGTAGTGAGAATGATCAATGTC
ATGTGGAAAAGCCGAGTCATACCGGAACTGTGGACAGAGTCTACCATAGT
CTCTATCCCAACGAAGGGTGAGATGACAATCATGGGTAACTGTCGCAGGA
TATCTCTCATGAGTTCGGTACTCAAGATATTAATGGTGATCATAGCCCAG
AGACGGATCGACACGTTAGAAGGGGGCTTTCGGTGTAGGGAAGAATGTAT
AGTACAAGCAGGATGCCTCCTAGAAATCTGCCAGAGAAGGAAAATTCATA
CACAAAATACCTTCCTAACATTTGTAGACCTTAAGAAAGCATATGATACC
GTCCCACACGAAGCTCTTTTTGGTAAATTACACCACTATGGTGTCCGAGG
TAGTGTGTTAGGGTATATCCGAGAGGTATATGGAAGAAGCACTATTTCCG
TTCGGTATAGCGGGGGCAACTCGCCCCCAGTACGCCTGAATAGAGGAGTG
CGGCAAGAGTGCCCACTGTCCCCGACTTTGTTCAATGTGTTGATTAGTGA
CATCTTGGACGGAGCCGAGCAGTGGGGCGTCGGAATCGATGGTACAGAAA
CTAAGTTCCCGGGACTTCTATTCGCGGACGCCTTAGTTTGTATGACCCCC
ACTCGCAAAAAGTTAGTCAAGATGAACAATCACTTGACTAAATCGATGCA
AGCAAACGAAACGCAAGCAGATATTGAAAAGTGTAGAGTCATGGCCATCA
AAGGGTTCCGCACGGAACGACTAAGAAGAGAAGCACAAAGATGGCAATTG
GGGGGGGAGCAGTTACCAATAGTCGAGGAGTATCGGTACTTGGGGATTAA
CTTCACCAGAAACCTGAAGGTAAGTAGTACGACGGTAGGCAGGTTAGAAG
GAGCGAAGAAATTTGTGGGCAAAATAACTCCGTTCCTTAGGAATACGTCC
ATCCCCGTGCCCCTAAAAGCCTCAGTTGTTCGATCGATTGTAGTCCCACA
GATGTTGTAA
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