mRNA_H-paniculata_contig71542.15130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig71542.15130.1
Unique NamemRNA_H-paniculata_contig71542.15130.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71542.15130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig71542contigH-paniculata_contig71542:2..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size149
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930867.6666503-CDS-H-paniculata_contig71542:3..561622930867.6666503-CDS-H-paniculata_contig71542:3..56Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71542 4..56 -
1691481488.3828425-CDS-H-paniculata_contig71542:3..561691481488.3828425-CDS-H-paniculata_contig71542:3..56Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71542 4..56 -
1622930867.6864502-CDS-H-paniculata_contig71542:373..4671622930867.6864502-CDS-H-paniculata_contig71542:373..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71542 374..467 -
1691481488.3977022-CDS-H-paniculata_contig71542:373..4671691481488.3977022-CDS-H-paniculata_contig71542:373..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71542 374..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig71542.15130.1prot_H-paniculata_contig71542.15130.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig71542 4..467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig71542.15130.1

>prot_H-paniculata_contig71542.15130.1 ID=prot_H-paniculata_contig71542.15130.1|Name=mRNA_H-paniculata_contig71542.15130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
RSWEVSRLSLRSILVATASLVSHVPKPFAEDGSIPKELGGLTSLTSFHL
back to top

mRNA from alignment at H-paniculata_contig71542:2..467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig71542.15130.1 ID=mRNA_H-paniculata_contig71542.15130.1|Name=mRNA_H-paniculata_contig71542.15130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=466bp|location=Sequence derived from alignment at H-paniculata_contig71542:2..467- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGCTGGGAGGTCTCACGTCTCTCACTTCGTTCCATCTTAGTGGCAAC
AGCATCACTGGTGAGTCACGTTCCAAAGCCTTTCGCGGAAGATGGTGAGC
GAGATACGCGAGAAGGTGCTCTACGGAGGAGGACGTGTAGGCGATATCGT
TGTATTCGGGCTGTGATTGGATCATACGTTCCCATGCTGGTGGTGTGTGT
GGGTCGGTATTTAGGGCCAGATCCGAGGCCGAATCTGGTGGGCGGGGTCT
TTACGGGGTGTCAGCGTAGTTCGTGTATGACCGTATCGTTTTCATGGAGT
GTTGTGTACGATGGCTCCAGTGTCGTTTGGTCGAGATTTGTTGGGTAGGT
GTATCTGTCGTGTTCGATGTGTGATGTGTACCTATCTGTCTCGTGCGTTC
TCGTGTCGCAGGCTCCATCCCTAAGGAGCTGGGAGGTCTCACGTCTCTCA
CTTCGTTCCATCTTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig71542:2..467-

>mRNA_H-paniculata_contig71542.15130.1 ID=mRNA_H-paniculata_contig71542.15130.1|Name=mRNA_H-paniculata_contig71542.15130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig71542:2..467- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGCTGGGAGGTCTCACGTCTCTCACTTCGTTCCATCTTAGTGGCAAC
AGCATCACTGGTGAGTCACGTTCCAAAGCCTTTCGCGGAAGATGAGGAGC
TGGGAGGTCTCACGTCTCTCACTTCGTTCCATCTTAGTGGCAACAGCATC
ACTGGTGAGTCACGTTCCAAAGCCTTTCGCGGAAGATGGCTCCATCCCTA
AGGAGCTGGGAGGTCTCACGTCTCTCACTTCGTTCCATCTTGCTCCATCC
CTAAGGAGCTGGGAGGTCTCACGTCTCTCACTTCGTTCCATCTT
back to top