mRNA_H-paniculata_contig71498.15125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig71498.15125.1
Unique NamemRNA_H-paniculata_contig71498.15125.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: A0A819XXR9_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A819XXR9_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 2.520e-6
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   25 LPTDPCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQ 141
            LP   C  N CQNGG+CT+ +GGG  CTC  G+ G+SC+
Sbjct:  112 LPGQRCLTNVCQNGGTCTMTLGGGFYCTCPPGYTGLSCE 150
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BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: A0A816E1I8_9BILA (Hypothetical protein n=5 Tax=Rotaria sordida TaxID=392033 RepID=A0A816E1I8_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 4.410e-6
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   25 LPTDPCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQ 141
            LP   C  N CQNGG+CT+ +GGG  CTC  G+ G+SC+
Sbjct:  160 LPGQRCLTNVCQNGGTCTMTLGGGFYCTCPPGYTGLSCE 198
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BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: UPI001601992E (uncharacterized protein LOC118409788 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601992E)

HSP 1 Score: 51.6 bits (122), Expect = 5.380e-6
Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   13 IVPYLP-TDPCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQT 144
            I   LP TDPC+P+PCQNGG CT   G  + C C  G+GG  CQT
Sbjct:  492 ICQLLPATDPCDPDPCQNGGVCTSS-GDSYTCECVDGWGGPDCQT 535
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BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: C3YBB9_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YBB9_BRAFL)

HSP 1 Score: 51.6 bits (122), Expect = 5.380e-6
Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   13 IVPYLP-TDPCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQT 144
            I   LP TDPC+P+PCQNGG CT   G  + C C  G+GG  CQT
Sbjct:  430 ICQLLPATDPCDPDPCQNGGVCTSS-GDSYTCECVDGWGGPDCQT 473
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BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: A0A815HMN8_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A815HMN8_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 7.280e-6
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   25 LPTDPCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQ 141
            LP   C  N CQNGG+CT+ +GGG  CTC  G+ G+SC+
Sbjct:  618 LPGQRCLTNVCQNGGTCTMTLGGGFYCTCPPGYTGLSCE 656
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BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: UPI0018D68C86 (neurogenic locus notch homolog protein 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D68C86)

HSP 1 Score: 51.2 bits (121), Expect = 7.350e-6
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   37 PCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQT-ITSCECN 165
            PCNP+PCQNGG+C     GG +C C +G+ G  C+  +T+C  N
Sbjct:   25 PCNPDPCQNGGNCFASHSGGFLCVCAAGYYGQRCENLVTACAPN 68
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BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: UPI0014582B17 (neurogenic locus notch homolog protein 2-like isoform X1 n=3 Tax=Pecten maximus TaxID=6579 RepID=UPI0014582B17)

HSP 1 Score: 51.2 bits (121), Expect = 7.380e-6
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   13 IVPYLPTDPCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQTITSCECNS 168
            + P +   PC+P+PCQNGG+CT   G  + CTC +G+GG +C  I  C  +S
Sbjct:  310 LTPDVLCRPCDPDPCQNGGTCTY-AGVVYTCTCPTGYGGTNCDQIDPCTLSS 360
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BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: A0A813WFT3_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A813WFT3_9BILA)

HSP 1 Score: 50.8 bits (120), Expect = 8.700e-6
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   25 LPTDPCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQ 141
            LP   C  N CQNGG+CT+ +GGG  CTC  G+ G+SC+
Sbjct:  224 LPGQRCLTNICQNGGTCTMTLGGGFYCTCPPGYTGLSCE 262
[Close]
BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: A0A2N2JNV2_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 TaxID=2013741 RepID=A0A2N2JNV2_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 1.020e-5
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:   34 DPCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQT 144
            DPC+PNPC NGG+C+ ++ G + C C  GF G  CQT
Sbjct: 5547 DPCDPNPCLNGGACSANLVGEYACDCPVGFVGTDCQT 5583
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BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Match: A0A8B8BW72_CRAVI (neurogenic locus notch homolog protein 1-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BW72_CRAVI)

HSP 1 Score: 50.4 bits (119), Expect = 1.270e-5
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   40 CNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQTI 147
            CNPNPCQNGGSC +  G  + C CT+GF G +C+ I
Sbjct:   23 CNPNPCQNGGSCKIS-GNTYTCACTNGFTGTNCEQI 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71498.15125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A819XXR9_9BILA2.520e-653.85Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A816E1I8_9BILA4.410e-653.85Hypothetical protein n=5 Tax=Rotaria sordida TaxID... [more]
UPI001601992E5.380e-655.56uncharacterized protein LOC118409788 n=1 Tax=Branc... [more]
C3YBB9_BRAFL5.380e-655.56Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
A0A815HMN8_9BILA7.280e-653.85Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
UPI0018D68C867.350e-647.73neurogenic locus notch homolog protein 1-like n=1 ... [more]
UPI0014582B177.380e-644.23neurogenic locus notch homolog protein 2-like isof... [more]
A0A813WFT3_9BILA8.700e-653.85Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A2N2JNV2_9DELT1.020e-554.05Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A8B8BW72_CRAVI1.270e-558.33neurogenic locus notch homolog protein 1-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig71498contigH-paniculata_contig71498:314..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog2880.D8LED1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidase inhibitor activity
EggNOG OGsCOG2340@1,KOG3017@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930866.8261192-CDS-H-paniculata_contig71498:313..5051622930866.8261192-CDS-H-paniculata_contig71498:313..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71498 314..505 +
1691481487.9797776-CDS-H-paniculata_contig71498:313..5051691481487.9797776-CDS-H-paniculata_contig71498:313..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71498 314..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig71498.15125.1prot_H-paniculata_contig71498.15125.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig71498 314..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig71498.15125.1

>prot_H-paniculata_contig71498.15125.1 ID=prot_H-paniculata_contig71498.15125.1|Name=mRNA_H-paniculata_contig71498.15125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MSNEIVPYLPTDPCNPNPCQNGGSCTVDIGGGHVCTCTSGFGGMSCQTIT
SCECNSSTTSRQN*
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mRNA from alignment at H-paniculata_contig71498:314..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig71498.15125.1 ID=mRNA_H-paniculata_contig71498.15125.1|Name=mRNA_H-paniculata_contig71498.15125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig71498:314..505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAACGAGATTGTCCCTTACCTACCTACAGATCCTTGCAACCCGAA
TCCTTGCCAAAATGGAGGTAGCTGTACCGTGGACATTGGCGGGGGGCATG
TGTGCACATGCACTTCAGGCTTCGGAGGCATGTCCTGCCAAACCATCACC
TCATGTGAGTGCAATTCATCAACAACCAGTAGGCAAAACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig71498:314..505+

>mRNA_H-paniculata_contig71498.15125.1 ID=mRNA_H-paniculata_contig71498.15125.1|Name=mRNA_H-paniculata_contig71498.15125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig71498:314..505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAACGAGATTGTCCCTTACCTACCTACAGATCCTTGCAACCCGAA
TCCTTGCCAAAATGGAGGTAGCTGTACCGTGGACATTGGCGGGGGGCATG
TGTGCACATGCACTTCAGGCTTCGGAGGCATGTCCTGCCAAACCATCACC
TCATGTGAGTGCAATTCATCAACAACCAGTAGGCAAAACTAGATGTCGAA
CGAGATTGTCCCTTACCTACCTACAGATCCTTGCAACCCGAATCCTTGCC
AAAATGGAGGTAGCTGTACCGTGGACATTGGCGGGGGGCATGTGTGCACA
TGCACTTCAGGCTTCGGAGGCATGTCCTGCCAAACCATCACCTCATGTGA
GTGCAATTCATCAACAACCAGTAGGCAAAACTAG
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