mRNA_H-paniculata_contig71217.15097.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig71217.15097.1
Unique NamemRNA_H-paniculata_contig71217.15097.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A8F0F7B2_9PHAE (Ribosomal protein S1 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7B2_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.970e-60
Identity = 101/122 (82.79%), Postives = 109/122 (89.34%), Query Frame = 1
Query:    1 MSSFIVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
            M  F+ TSNFEFN+FGLLLSQYDYKVK NDILAGSIIGLESTHALVDLGLEK+A LPLTEIT +K   QSKLL+INFIGEF IL IN+K +QILVSLRYVHSL LWERLKQIDFK+TIIYAK
Sbjct:    1 MFPFLTTSNFEFNKFGLLLSQYDYKVKKNDILAGSIIGLESTHALVDLGLEKIAFLPLTEITIKKTGHQSKLLNINFIGEFLILDINEKTEQILVSLRYVHSLCLWERLKQIDFKHTIIYAK 122          
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A2I4Q389_9PHAE (30S ribosomal protein S1 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q389_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 4.360e-45
Identity = 78/118 (66.10%), Postives = 96/118 (81.36%), Query Frame = 1
Query:   13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
            +VTSNFEFN+F LLLS+YDYKVK  DILAG +IGLE+THALVD+GL+KVA LPL EI  +   +  ++L +NF+GEF IL +NK+  Q +VSL+ +HSLYLWERLKQID K TIIYAK
Sbjct:    1 MVTSNFEFNKFALLLSKYDYKVKQYDILAGVVIGLETTHALVDIGLKKVAFLPLQEIYVKVPNEPKEVLDMNFVGEFLILYLNKRTNQTIVSLKQIHSLYLWERLKQIDLKNTIIYAK 118          
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: D1J709_ECTSI (Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J709_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 3.300e-41
Identity = 72/118 (61.02%), Postives = 94/118 (79.66%), Query Frame = 1
Query:   13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
            I TS F+FN+FGL+LSQY YKVK NDILAG IIG+ES + LVDLGLE+V  LPL EI+   I + ++LL++N++GEF IL INKK+ +I++S++ V S+YLW RL+QIDFK   IYAK
Sbjct:    5 IATSKFDFNKFGLILSQYSYKVKTNDILAGIIIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNVNYVGEFLILDINKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAK 122          
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A8F0FC68_9PHAE (Ribosomal protein S1 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC68_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.580e-40
Identity = 72/122 (59.02%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    1 MSSFIVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
            MSS I+ S F FN+FGL+LSQY YKVK NDILAG ++G+ES +ALVDLGL+++ +LPL EI+    ++  +LLHINFI EF IL I+    +I+VSL+ V SLYLW RL+Q+DF   IIYAK
Sbjct:    1 MSSSIIVSKFNFNKFGLILSQYSYKVKKNDILAGIVVGIESNYALVDLGLDQIGILPLNEISIHTNKNPHELLHINFICEFLILNISTNPSRIIVSLKRVESLYLWNRLRQMDFTNMIIYAK 122          
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A8E6D6L3_9PHAE (Ribosomal protein S1 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6L3_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.020e-39
Identity = 71/117 (60.68%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYA 363
            I+TS F+ NRFGL+L++Y Y+VK NDILAG IIGLESTHALVD+GLE+ A+LP  EI    + +    L+I+FIGEF IL INK  QQI+VSL+ V  + LW+R++QIDFK T+IYA
Sbjct:    5 ILTSKFKTNRFGLILAKYSYRVKLNDILAGRIIGLESTHALVDIGLERAALLPREEINVSAVNNPKAALYIDFIGEFLILSINKTTQQIIVSLKQVDCMRLWQRIRQIDFKNTVIYA 121          
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A6B7EVE1_9PHAE (30S ribosomal protein S1 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVE1_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.040e-39
Identity = 68/118 (57.63%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
            I TS F+FN+FGL+LS+Y YK+K NDILAG ++G+ES + LVD+GL++V  LPL EI+   I  +  LL+IN+IGEF IL INK + +I+VS++ V S+YLW RL+QIDFK   IYAK
Sbjct:    5 ITTSKFDFNKFGLILSKYSYKIKTNDILAGIVVGVESNYVLVDVGLDQVCFLPLKEISISPITKKIDLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYAK 122          
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A1I9LVS8_9PHAE (30S ribosomal protein S1 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVS8_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 8.370e-39
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
            +V S F+FN+FGL+LS+Y YKVK NDILAG II +ES +ALVDLGLEKV  LP  EI+   I D S LL +N+IGEF IL +N  + +I+VS++ V S+YLW RL+QIDF    IYAK
Sbjct:    5 VVVSKFDFNKFGLILSKYSYKVKTNDILAGIIIAVESNYALVDLGLEKVCFLPFDEISISTISDPSDLLKLNYIGEFLILDMNNNSNRIIVSIKGVQSIYLWNRLRQIDFANLTIYAK 122          
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A8F0F7Y6_9PHAE (Ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Y6_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.480e-38
Identity = 67/118 (56.78%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
            IVTS F+FN+FGL+LS+Y Y++K NDILAG IIG+ES +ALVDLGL+++  LP+ E+      D  KLL+INFIGEF IL I K   +I++SL+ + S+YLW RL+Q+DF    IYAK
Sbjct:    5 IVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLDQICFLPIEELAIYLTVDPHKLLNINFIGEFLILNITKNQSRIILSLKRIESIYLWNRLRQLDFTNITIYAK 122          
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A2R4QQ05_9PHAE (30S ribosomal protein S1 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ05_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 8.300e-38
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
            IVTS F+FN+FGLLLS++ Y+VKNNDILAG +IGLE  +AL+DLGLE++  LPL E++   I +  +LL+INFI EF IL I K  Q+I+VSL+ V S+YLW RL+Q+DF   IIYAK
Sbjct:    3 IVTSKFDFNKFGLLLSKHSYQVKNNDILAGILIGLEPEYALIDLGLERICFLPLKELSLSHITNAQELLNINFIAEFFILDI-KDNQRIIVSLKRVESIYLWNRLRQLDFTNMIIYAK 119          
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A5A4MJF2_9PHAE (30S ribosomal protein S1 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJF2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.930e-37
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    1 MSSFIVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEK-IQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
            M  +IVTS F+FN+FGL+LS+Y YKVK +DILAG IIG+ES +ALVDLGLE+V  LPL EI+    I     LL++N IGEF IL IN+ + +I+VS++ V S+YLW RL+QIDF    IYAK
Sbjct:    1 MLLYIVTSKFDFNKFGLILSKYSYKVKTDDILAGIIIGIESNYALVDLGLEQVCFLPLKEISISSPISGPIDLLNVNSIGEFLILDINQNSNRIMVSMKRVQSIYLWNRLRQIDFSNITIYAK 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A8F0F7B2_9PHAE1.970e-6082.79Ribosomal protein S1 n=1 Tax=Protohalopteris sp. T... [more]
A0A2I4Q389_9PHAE4.360e-4566.1030S ribosomal protein S1 n=1 Tax=Dictyopteris diva... [more]
D1J709_ECTSI3.300e-4161.02Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectoc... [more]
A0A8F0FC68_9PHAE1.580e-4059.02Ribosomal protein S1 n=1 Tax=Desmarestia aculeata ... [more]
A0A8E6D6L3_9PHAE1.020e-3960.68Ribosomal protein S1 n=1 Tax=Ishige okamurae TaxID... [more]
A0A6B7EVE1_9PHAE3.040e-3957.6330S ribosomal protein S1 n=1 Tax=Cladosiphon okamu... [more]
A0A1I9LVS8_9PHAE8.370e-3959.3230S ribosomal protein S1 n=1 Tax=Pleurocladia lacu... [more]
A0A8F0F7Y6_9PHAE4.480e-3856.78Ribosomal protein S1 n=2 Tax=Laminariales TaxID=28... [more]
A0A2R4QQ05_9PHAE8.300e-3860.1730S ribosomal protein S1 n=3 Tax=Fucaceae TaxID=30... [more]
A0A5A4MJF2_9PHAE1.930e-3758.5430S ribosomal protein S1 n=5 Tax=Scytosiphonaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig71217contigH-paniculata_contig71217:252..647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.9
Seed ortholog evalue5.2e-10
Seed eggNOG ortholog110662.Syncc9605_0468
Preferred namerps1a
KEGG koko:K02945
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
EggNOG free text desc.ribosomal protein S1
EggNOG OGs1G11B@1117,1GYER@1129,COG0539@1,COG0539@2
COG Functional cat.J
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930862.7663531-CDS-H-paniculata_contig71217:251..6471622930862.7663531-CDS-H-paniculata_contig71217:251..647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71217 252..647 -
1691481486.2873392-CDS-H-paniculata_contig71217:251..6471691481486.2873392-CDS-H-paniculata_contig71217:251..647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71217 252..647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig71217.15097.1prot_H-paniculata_contig71217.15097.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig71217 252..647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig71217.15097.1

>prot_H-paniculata_contig71217.15097.1 ID=prot_H-paniculata_contig71217.15097.1|Name=mRNA_H-paniculata_contig71217.15097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MSSFIVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGL
EKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYV
HSLYLWERLKQIDFKYTIIYAKKXXXSLSFKL
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mRNA from alignment at H-paniculata_contig71217:252..647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig71217.15097.1 ID=mRNA_H-paniculata_contig71217.15097.1|Name=mRNA_H-paniculata_contig71217.15097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig71217:252..647- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCTTTTATTGTTACGTCAAATTTTGAGTTTAATAGATTTGGACT ACTTTTATCACAATATGATTATAAGGTGAAAAACAATGATATATTAGCTG GGTCTATTATTGGTTTAGAATCTACTCATGCTTTAGTTGATCTTGGCTTA GAAAAAGTAGCGGTTTTGCCTTTAACTGAAATTACTTTTGAAAAAATTCA AGATCAAAGTAAATTACTGCATATAAATTTTATTGGGGAATTTTCAATCC TTAAGATTAATAAAAAAGCTCAACAAATATTAGTTTCTTTACGTTATGTT CATTCTTTATATCTATGGGAACGATTAAAGCAAATAGATTTTAAATATAC TATCATTTATGCAAAAAAGANNNNNNNTAGTTTAAGTTTTAAATTA
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Coding sequence (CDS) from alignment at H-paniculata_contig71217:252..647-

>mRNA_H-paniculata_contig71217.15097.1 ID=mRNA_H-paniculata_contig71217.15097.1|Name=mRNA_H-paniculata_contig71217.15097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig71217:252..647- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCTTTTATTGTTACGTCAAATTTTGAGTTTAATAGATTTGGACT
ACTTTTATCACAATATGATTATAAGGTGAAAAACAATGATATATTAGCTG
GGTCTATTATTGGTTTAGAATCTACTCATGCTTTAGTTGATCTTGGCTTA
GAAAAAGTAGCGGTTTTGCCTTTAACTGAAATTACTTTTGAAAAAATTCA
AGATCAAAGTAAATTACTGCATATAAATTTTATTGGGGAATTTTCAATCC
TTAAGATTAATAAAAAAGCTCAACAAATATTAGTTTCTTTACGTTATGTT
CATTCTTTATATCTATGGGAACGATTAAAGCAAATAGATTTTAAATATAC
TATCATTTATGCAAAAAAGANNNNNNNTAGTTTAAGTTTTAAATTAATGT
CTTCTTTTATTGTTACGTCAAATTTTGAGTTTAATAGATTTGGACTACTT
TTATCACAATATGATTATAAGGTGAAAAACAATGATATATTAGCTGGGTC
TATTATTGGTTTAGAATCTACTCATGCTTTAGTTGATCTTGGCTTAGAAA
AAGTAGCGGTTTTGCCTTTAACTGAAATTACTTTTGAAAAAATTCAAGAT
CAAAGTAAATTACTGCATATAAATTTTATTGGGGAATTTTCAATCCTTAA
GATTAATAAAAAAGCTCAACAAATATTAGTTTCTTTACGTTATGTTCATT
CTTTATATCTATGGGAACGATTAAAGCAAATAGATTTTAAATATACTATC
ATTTATGCAAAAAAGANNNNNNNTAGTTTAAGTTTTAAATTA
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