mRNA_H-paniculata_contig71217.15097.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A8F0F7B2_9PHAE (Ribosomal protein S1 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7B2_9PHAE) HSP 1 Score: 196 bits (497), Expect = 1.970e-60 Identity = 101/122 (82.79%), Postives = 109/122 (89.34%), Query Frame = 1
Query: 1 MSSFIVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
M F+ TSNFEFN+FGLLLSQYDYKVK NDILAGSIIGLESTHALVDLGLEK+A LPLTEIT +K QSKLL+INFIGEF IL IN+K +QILVSLRYVHSL LWERLKQIDFK+TIIYAK
Sbjct: 1 MFPFLTTSNFEFNKFGLLLSQYDYKVKKNDILAGSIIGLESTHALVDLGLEKIAFLPLTEITIKKTGHQSKLLNINFIGEFLILDINEKTEQILVSLRYVHSLCLWERLKQIDFKHTIIYAK 122
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A2I4Q389_9PHAE (30S ribosomal protein S1 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q389_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.360e-45 Identity = 78/118 (66.10%), Postives = 96/118 (81.36%), Query Frame = 1
Query: 13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
+VTSNFEFN+F LLLS+YDYKVK DILAG +IGLE+THALVD+GL+KVA LPL EI + + ++L +NF+GEF IL +NK+ Q +VSL+ +HSLYLWERLKQID K TIIYAK
Sbjct: 1 MVTSNFEFNKFALLLSKYDYKVKQYDILAGVVIGLETTHALVDIGLKKVAFLPLQEIYVKVPNEPKEVLDMNFVGEFLILYLNKRTNQTIVSLKQIHSLYLWERLKQIDLKNTIIYAK 118
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: D1J709_ECTSI (Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J709_ECTSI) HSP 1 Score: 146 bits (369), Expect = 3.300e-41 Identity = 72/118 (61.02%), Postives = 94/118 (79.66%), Query Frame = 1
Query: 13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
I TS F+FN+FGL+LSQY YKVK NDILAG IIG+ES + LVDLGLE+V LPL EI+ I + ++LL++N++GEF IL INKK+ +I++S++ V S+YLW RL+QIDFK IYAK
Sbjct: 5 IATSKFDFNKFGLILSQYSYKVKTNDILAGIIIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNVNYVGEFLILDINKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAK 122
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A8F0FC68_9PHAE (Ribosomal protein S1 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC68_9PHAE) HSP 1 Score: 145 bits (365), Expect = 1.580e-40 Identity = 72/122 (59.02%), Postives = 93/122 (76.23%), Query Frame = 1
Query: 1 MSSFIVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
MSS I+ S F FN+FGL+LSQY YKVK NDILAG ++G+ES +ALVDLGL+++ +LPL EI+ ++ +LLHINFI EF IL I+ +I+VSL+ V SLYLW RL+Q+DF IIYAK
Sbjct: 1 MSSSIIVSKFNFNKFGLILSQYSYKVKKNDILAGIVVGIESNYALVDLGLDQIGILPLNEISIHTNKNPHELLHINFICEFLILNISTNPSRIIVSLKRVESLYLWNRLRQMDFTNMIIYAK 122
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A8E6D6L3_9PHAE (Ribosomal protein S1 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6L3_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.020e-39 Identity = 71/117 (60.68%), Postives = 91/117 (77.78%), Query Frame = 1
Query: 13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYA 363
I+TS F+ NRFGL+L++Y Y+VK NDILAG IIGLESTHALVD+GLE+ A+LP EI + + L+I+FIGEF IL INK QQI+VSL+ V + LW+R++QIDFK T+IYA
Sbjct: 5 ILTSKFKTNRFGLILAKYSYRVKLNDILAGRIIGLESTHALVDIGLERAALLPREEINVSAVNNPKAALYIDFIGEFLILSINKTTQQIIVSLKQVDCMRLWQRIRQIDFKNTVIYA 121
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A6B7EVE1_9PHAE (30S ribosomal protein S1 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVE1_9PHAE) HSP 1 Score: 141 bits (356), Expect = 3.040e-39 Identity = 68/118 (57.63%), Postives = 91/118 (77.12%), Query Frame = 1
Query: 13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
I TS F+FN+FGL+LS+Y YK+K NDILAG ++G+ES + LVD+GL++V LPL EI+ I + LL+IN+IGEF IL INK + +I+VS++ V S+YLW RL+QIDFK IYAK
Sbjct: 5 ITTSKFDFNKFGLILSKYSYKIKTNDILAGIVVGVESNYVLVDVGLDQVCFLPLKEISISPITKKIDLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYAK 122
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A1I9LVS8_9PHAE (30S ribosomal protein S1 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVS8_9PHAE) HSP 1 Score: 140 bits (353), Expect = 8.370e-39 Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 1
Query: 13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
+V S F+FN+FGL+LS+Y YKVK NDILAG II +ES +ALVDLGLEKV LP EI+ I D S LL +N+IGEF IL +N + +I+VS++ V S+YLW RL+QIDF IYAK
Sbjct: 5 VVVSKFDFNKFGLILSKYSYKVKTNDILAGIIIAVESNYALVDLGLEKVCFLPFDEISISTISDPSDLLKLNYIGEFLILDMNNNSNRIIVSIKGVQSIYLWNRLRQIDFANLTIYAK 122
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A8F0F7Y6_9PHAE (Ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Y6_9PHAE) HSP 1 Score: 138 bits (348), Expect = 4.480e-38 Identity = 67/118 (56.78%), Postives = 89/118 (75.42%), Query Frame = 1
Query: 13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
IVTS F+FN+FGL+LS+Y Y++K NDILAG IIG+ES +ALVDLGL+++ LP+ E+ D KLL+INFIGEF IL I K +I++SL+ + S+YLW RL+Q+DF IYAK
Sbjct: 5 IVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLDQICFLPIEELAIYLTVDPHKLLNINFIGEFLILNITKNQSRIILSLKRIESIYLWNRLRQLDFTNITIYAK 122
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A2R4QQ05_9PHAE (30S ribosomal protein S1 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ05_9PHAE) HSP 1 Score: 137 bits (346), Expect = 8.300e-38 Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 1
Query: 13 IVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEKIQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
IVTS F+FN+FGLLLS++ Y+VKNNDILAG +IGLE +AL+DLGLE++ LPL E++ I + +LL+INFI EF IL I K Q+I+VSL+ V S+YLW RL+Q+DF IIYAK
Sbjct: 3 IVTSKFDFNKFGLLLSKHSYQVKNNDILAGILIGLEPEYALIDLGLERICFLPLKELSLSHITNAQELLNINFIAEFFILDI-KDNQRIIVSLKRVESIYLWNRLRQLDFTNMIIYAK 119
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Match: A0A5A4MJF2_9PHAE (30S ribosomal protein S1 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJF2_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.930e-37 Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1
Query: 1 MSSFIVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLEKVAVLPLTEITFEK-IQDQSKLLHINFIGEFSILKINKKAQQILVSLRYVHSLYLWERLKQIDFKYTIIYAK 366
M +IVTS F+FN+FGL+LS+Y YKVK +DILAG IIG+ES +ALVDLGLE+V LPL EI+ I LL++N IGEF IL IN+ + +I+VS++ V S+YLW RL+QIDF IYAK
Sbjct: 1 MLLYIVTSKFDFNKFGLILSKYSYKVKTDDILAGIIIGIESNYALVDLGLEQVCFLPLKEISISSPISGPIDLLNVNSIGEFLILDINQNSNRIMVSMKRVQSIYLWNRLRQIDFSNITIYAK 123 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71217.15097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig71217.15097.1 >prot_H-paniculata_contig71217.15097.1 ID=prot_H-paniculata_contig71217.15097.1|Name=mRNA_H-paniculata_contig71217.15097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp MSSFIVTSNFEFNRFGLLLSQYDYKVKNNDILAGSIIGLESTHALVDLGLback to top mRNA from alignment at H-paniculata_contig71217:252..647- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig71217.15097.1 ID=mRNA_H-paniculata_contig71217.15097.1|Name=mRNA_H-paniculata_contig71217.15097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig71217:252..647- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig71217:252..647- >mRNA_H-paniculata_contig71217.15097.1 ID=mRNA_H-paniculata_contig71217.15097.1|Name=mRNA_H-paniculata_contig71217.15097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig71217:252..647- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |