mRNA_H-paniculata_contig7118.15091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7118.15091.1
Unique NamemRNA_H-paniculata_contig7118.15091.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7118.15091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7118contigH-paniculata_contig7118:1564..2443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size200
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7118.15091.1prot_H-paniculata_contig7118.15091.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7118 1564..2432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.3804848-CDS-H-paniculata_contig7118:1563..16951622930861.3804848-CDS-H-paniculata_contig7118:1563..1695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7118 1564..1695 -
1691481485.5918233-CDS-H-paniculata_contig7118:1563..16951691481485.5918233-CDS-H-paniculata_contig7118:1563..1695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7118 1564..1695 -
1622930861.3986135-CDS-H-paniculata_contig7118:2375..24321622930861.3986135-CDS-H-paniculata_contig7118:2375..2432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7118 2376..2432 -
1691481485.6046202-CDS-H-paniculata_contig7118:2375..24321691481485.6046202-CDS-H-paniculata_contig7118:2375..2432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7118 2376..2432 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.413283-UTR-H-paniculata_contig7118:2432..24431622930861.413283-UTR-H-paniculata_contig7118:2432..2443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7118 2433..2443 -
1691481485.613357-UTR-H-paniculata_contig7118:2432..24431691481485.613357-UTR-H-paniculata_contig7118:2432..2443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7118 2433..2443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7118.15091.1

>prot_H-paniculata_contig7118.15091.1 ID=prot_H-paniculata_contig7118.15091.1|Name=mRNA_H-paniculata_contig7118.15091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MSMYQQHVPATGQRPEILKGKTGRGDCEIPSFAPKPPRKYNSSKGYGGGC
TGYWHGLRTLPNS
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mRNA from alignment at H-paniculata_contig7118:1564..2443-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7118.15091.1 ID=mRNA_H-paniculata_contig7118.15091.1|Name=mRNA_H-paniculata_contig7118.15091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=880bp|location=Sequence derived from alignment at H-paniculata_contig7118:1564..2443- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGACGGACCATGAGCATGTACCAGCAGCATGTACCAGCAACAGGCCAA
AGACCAGAGATTCTCAAGGTATGCCTGGGGAAGCTTGCGCACATTCGCTT
CTACTAACTGCCCCATCTACTTTTCTTTTTTTTTCAACCGCCGGAAGGCT
GAGGCAAAAACCTTTACCGCTGCTTCCAAACTTAAGTACGTTACCAAAGT
ATGTCTACATTTCCTTTAAGGGGTAGGCGCCACCCCGGTTCGGCCGAACC
GAGTAGGCAGTGTAGGGGTTTCACCCACTAAAAGACCTCTGACTAGACTT
CCAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTCGGGCGTAGGTCCG
TGGGCCCCACCTGAATCGATAGTCAGGATTGGTGCGATACATGCGCCAGT
ACAGTCAATAATCCCTTTTAAGGCGTACTCGATTAAGTCGCATGCCAACT
TTAAGAGGTACGAATTCCATCTAATAGATGACTTTAAGGCGTAGGTGGGG
GCATATATCATTTTTTGTTAAGATACAGCTCATACTCTATTGGCCACGAA
AGGCCGCTGGCCATGACCCTTTGTGGCCGGGGGTGGGTCACAGATGTCTG
TACCTACTCGTAAGTAGCAGGTAGGACCCACTGTTGTTGTTTCTGTGGAC
AAATCTACTAAACATGTAAAAAAAATCATTATGCAGTGTGTGCTGTCTGA
TGTGCCTAGCACACTAAGCTTGACTGAAAATCATGTATTGCGTCGCAGGG
CAAGACAGGGAGAGGAGACTGCGAAATCCCTTCGTTTGCCCCCAAGCCAC
CAAGAAAGTACAACTCGAGTAAAGGTTACGGAGGAGGCTGCACCGGCTAC
TGGCATGGGTTGCGAACACTTCCAAATTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig7118:1564..2443-

>mRNA_H-paniculata_contig7118.15091.1 ID=mRNA_H-paniculata_contig7118.15091.1|Name=mRNA_H-paniculata_contig7118.15091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig7118:1564..2443- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCATGTACCAGCAGCATGTACCAGCAACAGGCCAAAGACCAGAGAT
TCTCAAGATGAGCATGTACCAGCAGCATGTACCAGCAACAGGCCAAAGAC
CAGAGATTCTCAAGGGCAAGACAGGGAGAGGAGACTGCGAAATCCCTTCG
TTTGCCCCCAAGCCACCAAGAAAGTACAACTCGAGTAAAGGTTACGGAGG
AGGCTGCACCGGCTACTGGCATGGGTTGCGAACACTTCCAAATTCCGGCA
AGACAGGGAGAGGAGACTGCGAAATCCCTTCGTTTGCCCCCAAGCCACCA
AGAAAGTACAACTCGAGTAAAGGTTACGGAGGAGGCTGCACCGGCTACTG
GCATGGGTTGCGAACACTTCCAAATTCC
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