mRNA_H-paniculata_contig7115.15088.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7115.15088.1
Unique NamemRNA_H-paniculata_contig7115.15088.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Match: A0A6H5JID9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.710e-15
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:  382 SFWIPIEVKKAYPSANRILS*SVLTRIGMAKEMISVMCPFHAGMKACVRLDTGKSSDWFGVEQGLRQGYVLSPLLLGVFLS--ISSVSPGF 648
            + ++  ++KKAY S NR L  SVL R G+ +EMI+V+  FH GM+A VR+D G+ S WF V QGLRQG VLS LLL +FL+  I  V+ GF
Sbjct:  680 TLYMCFDLKKAYDSVNRELLWSVLARAGIPEEMIAVIRQFHDGMQAWVRMDDGEFSAWFWVTQGLRQGCVLSLLLLNIFLAAVIEVVAIGF 770
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BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Match: A0A6H5JGN2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.890e-14
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:  397 IEVKKAYPSANRILS*SVLTRIGMAKEMISVMCPFHAGMKACVRLDTGKSSDWFGVEQGLRQGYVLSPLLLGV 615
            +++ KAY S ++ +   VLTR G+  ++I V+  FH GM+A VR+D G+ SDWF V QG+RQG+VLSPLL  +
Sbjct:   24 VDLNKAYDSVDQKMLWKVLTRAGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGWVLSPLLFNI 96
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BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Match: A0A6H5KQ53_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ53_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.840e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:  397 IEVKKAYPSANRILS*SVLTRIGMAKEMISVMCPFHAGMKACVRLDTGKSSDWFGVEQGLRQGYVLSPLLLGVFLS 624
            +++ KAY S +R L   VL R G+  ++I V+  FH GM+  VR+D G+ S+WF V QG+RQG VLS LL+ +F +
Sbjct:   82 VDLNKAYDSVDRQLLWKVLARAGIPAKLIEVIRQFHDGMRGRVRMDGGELSNWFFVTQGVRQGCVLSALLINIFFA 157
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BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Match: A0A6H5KPM6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPM6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.060e-11
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:  397 IEVKKAYPSANRILS*SVLTRIGMAKEMISVMCPFHAGMKACVRLDTGKSSDWFGVEQGLRQGYVLSPLLL 609
            +++ KAY S +R +   VL R G+  ++I V+  FH GM+A VR+D G+ SDWF V QG+RQG VLSPLLL
Sbjct:  231 VDLNKAYDSVDREMLWKVLARGGIPAKLIEVIRRFHDGMRARVRMDDGELSDWFFVIQGVRQGCVLSPLLL 301
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BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Match: A0A6H5J872_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J872_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 8.040e-11
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  397 IEVKKAYPSANRILS*SVLTRIGMAKEMISVMCPFHAGMKACVRLDTGKSSDWFGVEQGLRQGYVLSPLLLGVFLS 624
            +++ KAY   +R +   VL R G+  ++I V+  FH GM+A VR+D G+  DWF V QG+RQG VLSPLLL +  +
Sbjct:   84 VDLTKAYDLVDREMLWKVLARAGIPAKLIKVIRQFHDGMRARVRMDDGELLDWFFVTQGVRQGCVLSPLLLNILFA 159
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BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.790e-8
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  478 MISVMCPFHAGMKACVRLDTGKSSDWFGVEQGLRQGYVLSPLLLGVFLS 624
            M++ +  FH GM+ACVR+D G+ SDWF V QGLRQG  L+PLL  +F++
Sbjct:    1 MLAAILQFHDGMRACVRMDDGRCSDWFDVGQGLRQGCNLAPLLFNLFIA 49
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BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Match: A0A833P9X4_ACIBZ (Reverse transcriptase domain-containing protein n=1 Tax=Acinetobacter bereziniae TaxID=106648 RepID=A0A833P9X4_ACIBZ)

HSP 1 Score: 63.2 bits (152), Expect = 6.980e-8
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  397 IEVKKAYPSANRILS*SVLTRIGMAKEMISVMCPFHAGMKACVRLDTGKSSDWFGVEQGLRQGYVLSPLLLGVFL 621
            ++++KAY + NR      L   G+ +  ++V+   + G KACVR++ G  SDWF V+QG+RQG V+SP L  VF+
Sbjct:  512 VDLEKAYDNVNRSKLWQTLAEYGVDEPTLNVLKEIYNGSKACVRVN-GTLSDWFEVQQGVRQGCVMSPWLFNVFI 585
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BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Match: A0A0G4HDT3_9ALVE (Uncharacterized protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HDT3_9ALVE)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-5
Identity = 25/74 (33.78%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:  385 FWIPIEVKKAYPSANRILS*SVLTRIGMAKEMISVMCPFHAGMKACVRLDTGKSSDWFGVEQGLRQGYVLSPLL 606
            FW+ +++ KA+ + NR+   ++L ++G+   +  ++  F   M+ACV ++ G+ ++ F VE G+RQG V+ PLL
Sbjct:    8 FWLFVDLTKAFDTVNRVALRALLLKVGIPPLLTDIIMSFMQDMEACVEVN-GERTEPFAVENGVRQGCVIGPLL 80
[Close]
BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Match: A0A0G4GUQ4_9ALVE (Reverse transcriptase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GUQ4_9ALVE)

HSP 1 Score: 55.1 bits (131), Expect = 3.770e-5
Identity = 25/74 (33.78%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:  385 FWIPIEVKKAYPSANRILS*SVLTRIGMAKEMISVMCPFHAGMKACVRLDTGKSSDWFGVEQGLRQGYVLSPLL 606
            FW+ +++ KA+ + NR+    +L ++G+   +  ++  F   M+ACV ++ G+ ++ F VE G+RQG V+ PLL
Sbjct:  739 FWLFVDLTKAFDTVNRVALHVLLLKVGIPPLLTDIIMSFMQDMEACVEVN-GERTEPFAVENGVRQGCVIGPLL 811
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7115.15088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JID9_9PHAE1.710e-1552.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGN2_9PHAE3.890e-1449.32Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KQ53_9PHAE3.840e-1246.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KPM6_9PHAE2.060e-1152.11Reverse transcriptase domain-containing protein (F... [more]
A0A6H5J872_9PHAE8.040e-1146.05Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K2J8_9PHAE1.790e-855.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A833P9X4_ACIBZ6.980e-841.33Reverse transcriptase domain-containing protein n=... [more]
A0A0G4HDT3_9ALVE1.290e-533.78Uncharacterized protein n=2 Tax=Chromera velia CCM... [more]
A0A0G4GUQ4_9ALVE3.770e-533.78Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7115contigH-paniculata_contig7115:10282..11810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size695
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7115.15088.1prot_H-paniculata_contig7115.15088.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7115 10304..11515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.0322468-UTR-H-paniculata_contig7115:10281..103031622930861.0322468-UTR-H-paniculata_contig7115:10281..10303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7115 10282..10303 +
1691481485.4447331-UTR-H-paniculata_contig7115:10281..103031691481485.4447331-UTR-H-paniculata_contig7115:10281..10303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7115 10282..10303 +
1622930861.116874-UTR-H-paniculata_contig7115:11515..118101622930861.116874-UTR-H-paniculata_contig7115:11515..11810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7115 11516..11810 +
1691481485.4774663-UTR-H-paniculata_contig7115:11515..118101691481485.4774663-UTR-H-paniculata_contig7115:11515..11810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7115 11516..11810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930861.0859478-CDS-H-paniculata_contig7115:10303..103811622930861.0859478-CDS-H-paniculata_contig7115:10303..10381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7115 10304..10381 +
1691481485.4578245-CDS-H-paniculata_contig7115:10303..103811691481485.4578245-CDS-H-paniculata_contig7115:10303..10381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7115 10304..10381 +
1622930861.100686-CDS-H-paniculata_contig7115:11215..115151622930861.100686-CDS-H-paniculata_contig7115:11215..11515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7115 11216..11515 +
1691481485.4677637-CDS-H-paniculata_contig7115:11215..115151691481485.4677637-CDS-H-paniculata_contig7115:11215..11515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7115 11216..11515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7115.15088.1

>prot_H-paniculata_contig7115.15088.1 ID=prot_H-paniculata_contig7115.15088.1|Name=mRNA_H-paniculata_contig7115.15088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MGMTVGLMVEFFVPAKNGRESGRTIEDYTDAYWVDDRAKQLVKGIRLRQG
GPRHFEIVVEGGSALERQLASGFPVNTTRTEERIAGDLEIFRKEFDSQAT
ASSDEILSMCNMSFTEQMLAVFGFR*
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mRNA from alignment at H-paniculata_contig7115:10282..11810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7115.15088.1 ID=mRNA_H-paniculata_contig7115.15088.1|Name=mRNA_H-paniculata_contig7115.15088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1529bp|location=Sequence derived from alignment at H-paniculata_contig7115:10282..11810+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAATTAGCCGGGTAACAGCATGGGGATGACGGTCGGCCTCATGGTGG
AATTCTTCGTTCCCGCCAAGAACGGTAGGGAGTCCGGCAGGACAATCGAG
GTGCGTGATCGAGAAATCCAGCGGCAGGAGAGGGGAGGGAAACCGAGGGT
GGCACGTTGTTGATCAAAAGAGAGAACGTCAGGAAACAATGTATATCCAC
CCTCTGACATGTTCCACCTTTCAATCCCTCGCATTCATCACGAAACAAGC
CTTTTATTGAATCTTCCCTTCTTCCGGCAAACACTCTCGAGTTTCACTGA
AGCAGGCGTAACGCGTATTTGGAGAATGTGCAGGGTAGGTAGTCACAATT
TCGACATGGAAAATTCAACTGTTAACGGCTAACGATATAACTCATGTGTG
TAGTGAGTGATTGGAGTAGAGTTGTATTGCAAGATGTTGAAGCCTGCGTA
CTAGGGGAGTGGTTCTCACGAGATGACGTTTGCGATGACCAGAACCAGTA
CTCGTCGAGAATCTCTTCGGTACGAGAACACGATTGCTCTGTACTCGAAC
GGATACAGCTTAAGATGCTGAGCATCCAGTGATAGGTCAAGTCATCCGTT
TGCCCCTTGCCCTACCCAACCCCGTGCCCTACATATGACCCTCGTCCAAC
GCCCGAACGGGTAGGGTAGCTCGTGAACTGAGTATGACTGGAAGTCTAGT
CAGAGGTCTTTTAGTGGGTGCAACCCCCACACTGCCTACTTGGTTCGGCC
GAATCAGGGTGGCGCCTACCCCGCAGAGGAATAAATAACTATGTTCTATT
AAAGGAAATGTAGAAATATTTGGGTAGAAATACTCAAGTATGGAAGCATC
GGATAAAGATTCTTGCCTTAGCCTTCTGGGGGTTAAGAAAAGAAGAATGG
CCCTCGTGTTTCTCTATCTTGTAAAAATGGAAAGGACTACACCGATGCGT
ACTGGGTCGACGACCGCGCAAAGCAGCTTGTGAAGGGCATACGGCTACGT
CAGGGTGGCCCGAGGCACTTTGAAATTGTCGTCGAGGGAGGCAGTGCCCT
CGAACGCCAGCTCGCCTCCGGTTTTCCGGTCAATACGACCCGAACTGAGG
AGAGGATCGCAGGGGACCTCGAGATTTTTCGCAAAGAGTTTGATTCGCAA
GCCACAGCGTCGAGCGATGAGATTCTTTCCATGTGCAACATGTCTTTCAC
GGAGCAGATGTTGGCAGTTTTTGGATTCCGATAGAGGTCAAGAAAGCCTA
TCCATCAGCCAACCGCATTTTGTCGTAGAGCGTGCTTACGCGGATCGGGA
TGGCCAAAGAAATGATATCAGTCATGTGCCCATTCCACGCGGGGATGAAG
GCATGTGTACGACTGGATACTGGGAAATCATCGGACTGGTTCGGTGTCGA
ACAAGGGCTCCGTCAAGGATACGTACTTTCACCGTTGCTCTTGGGTGTCT
TTCTGTCCATCTCCTCTGTCAGCCCGGGCTTTTTGTCTACCTGCGGTTGG
TGTATCTCTTGCATGTTGCCTCGTTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig7115:10282..11810+

>mRNA_H-paniculata_contig7115.15088.1 ID=mRNA_H-paniculata_contig7115.15088.1|Name=mRNA_H-paniculata_contig7115.15088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig7115:10282..11810+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGATGACGGTCGGCCTCATGGTGGAATTCTTCGTTCCCGCCAAGAA
CGGTAGGGAGTCCGGCAGGACAATCGAGATGGGGATGACGGTCGGCCTCA
TGGTGGAATTCTTCGTTCCCGCCAAGAACGGTAGGGAGTCCGGCAGGACA
ATCGAGGACTACACCGATGCGTACTGGGTCGACGACCGCGCAAAGCAGCT
TGTGAAGGGCATACGGCTACGTCAGGGTGGCCCGAGGCACTTTGAAATTG
TCGTCGAGGGAGGCAGTGCCCTCGAACGCCAGCTCGCCTCCGGTTTTCCG
GTCAATACGACCCGAACTGAGGAGAGGATCGCAGGGGACCTCGAGATTTT
TCGCAAAGAGTTTGATTCGCAAGCCACAGCGTCGAGCGATGAGATTCTTT
CCATGTGCAACATGTCTTTCACGGAGCAGATGTTGGCAGTTTTTGGATTC
CGATAGGACTACACCGATGCGTACTGGGTCGACGACCGCGCAAAGCAGCT
TGTGAAGGGCATACGGCTACGTCAGGGTGGCCCGAGGCACTTTGAAATTG
TCGTCGAGGGAGGCAGTGCCCTCGAACGCCAGCTCGCCTCCGGTTTTCCG
GTCAATACGACCCGAACTGAGGAGAGGATCGCAGGGGACCTCGAGATTTT
TCGCAAAGAGTTTGATTCGCAAGCCACAGCGTCGAGCGATGAGATTCTTT
CCATGTGCAACATGTCTTTCACGGAGCAGATGTTGGCAGTTTTTGGATTC
CGATAG
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