mRNA_H-paniculata_contig7111.15084.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7111.15084.1
Unique NamemRNA_H-paniculata_contig7111.15084.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: D8LGE9_ECTSI (DUF1681 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE9_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 8.940e-97
Identity = 150/185 (81.08%), Postives = 164/185 (88.65%), Query Frame = 3 
Query:  204 LLIEQPLFSIKEVFVYRVPPLRAASGHRAEEWGLANPVFTGILKMVQVGNSCCLRLFKPPPEGELGASPELFAECEVRLDNGRTLQVYVEPVIDSSRYFVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEISAVEGERIKEDGESGAA-VRQTKDFSIGDGQKLHIELK 755
            L+IEQPL +IKEVFVYRVPPLRA+SGHRAEEWGLANPVFTG+LK+ QVGN+CCLRLFKPPPEGELGA+PELFA+CEVRLD GRTLQVYVE VIDSSRYFVLRCEDKASGRHAYVG+GFRERSSAFD KAVLDDFVRFLDRQKRA E SA+E    +E+GE     V+  KD SI +GQKLHI LK
Sbjct:   53 LVIEQPLLTIKEVFVYRVPPLRASSGHRAEEWGLANPVFTGVLKIAQVGNACCLRLFKPPPEGELGATPELFAQCEVRLDGGRTLQVYVESVIDSSRYFVLRCEDKASGRHAYVGVGFRERSSAFDFKAVLDDFVRFLDRQKRAEETSAIE----EEEGEEALGPVKLMKDLSIAEGQKLHIGLK 233
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: A0A6H5L105_9PHAE (DUF1681 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L105_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 4.300e-67
Identity = 112/147 (76.19%), Postives = 125/147 (85.03%), Query Frame = 3 
Query:  324 GILKMVQVGNSCCLRLFKPPPEGELGASPELFAECEVRLDNGRTLQVYVEPVIDSSRYFVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEISAVEGERIKEDGESGAA-VRQTKDFSIGDGQKLHIELKVA 761
            G+LK+ QVGN+CCLRLFKPPPEGELGA+PELFA+CEV LD GRTLQVYVE VIDSSRYFVLRCEDKASGRHAYVG+GFRERSSAFD KAVLDDFVRFLDRQKRA + SA++    +E+GE     V+  KD SI +GQKLHI LK A
Sbjct:    4 GVLKIAQVGNACCLRLFKPPPEGELGATPELFAQCEVLLDGGRTLQVYVESVIDSSRYFVLRCEDKASGRHAYVGVGFRERSSAFDFKAVLDDFVRFLDRQKRAEKTSAIK----EEEGEEALGPVKPMKDLSIAEGQKLHIGLKDA 146
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: A0A836CAQ5_9STRA (DUF1681 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ5_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.880e-52
Identity = 103/205 (50.24%), Postives = 132/205 (64.39%), Query Frame = 3 
Query:  210 IEQPLFSIKEVFVYRVPPLRAASGHRAEEWGLANPVFTGILKMVQVGNS--------------------CCLRLFKPPPEGELGASPELFAECEVRLDNGRTLQVYVEPVIDSSRYFVLRCEDKA-SGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEI-SAVEGERIKEDG--ESGAAVRQTKDFSIGDGQKLHIEL 752
            +E PL  IKEVFVYRVPP +AASGHRAEEWGL NP  TG +++ Q+ +                     C +++F PP EG+LGA+ +LFA C +R+  GR LQ +VE V+DSSRYFVLRCED+A SGR AYVG+GFRERS+AFD KA LDD+VR + RQ++A  +          EDG  E  A +    D S+  GQK+H+ L
Sbjct:   48 VEVPLLYIKEVFVYRVPPAKAASGHRAEEWGLENPALTGFMRISQLDDQSLVTLALTLKEAGAEYAVRWCLVKMFVPPKEGDLGAAAQLFATCCIRVGGGRFLQHFVEHVMDSSRYFVLRCEDQAGSGRVAYVGVGFRERSTAFDFKAALDDYVRSVQRQQQAERLRDRANSVDAAEDGSSEQRAPLPPVPDLSLHAGQKIHLSL 252
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: A0A7S2SVJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVJ6_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.830e-40
Identity = 91/209 (43.54%), Postives = 127/209 (60.77%), Query Frame = 3 
Query:  201 ELLIEQPLFSIKEVFVYRVPPLRAASGHRAEEWGLANPVFTGILKMVQVGNSCCLRLFKP--PPEGELGASPEL--FAECEVRLDNGRT-LQVYVEPVIDSSRYFVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEISAVEGERIKEDG------ESGAAVRQTK-----DFSIGDGQKLHIELKVASSDGST 779
            E ++E  L +++E FVYRVPPLR+  GHRAE+WGL NPV T +LK+VQ G+   +RLF+P    + E   + EL  FAEC VRL   +  L  +VE V+DSSRYFVLR ED  + +HA++G GFRER  AFD KA L D+ R++ R ++A E +    +R  + G      E GA+ +  +     D S+  G+K+ + LK     G T
Sbjct:   12 ENMVELALLTLEECFVYRVPPLRSHQGHRAEDWGLHNPVVTAVLKVVQRGDELRVRLFEPRKTKQNENLETTELHLFAECPVRLVGVKQQLSHFVEEVVDSSRYFVLRIEDPKTSKHAFIGAGFRERQMAFDFKATLADYSRYVHRLRQAQEAAQTPAQRRTDPGTPGLPAEDGASAQDPRRPPSPDLSLRKGEKIRLSLKRLPGGGKT 220
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: A0A7S3GU29_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU29_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.320e-36
Identity = 71/153 (46.41%), Postives = 105/153 (68.63%), Query Frame = 3 
Query:  201 ELLIEQPLFSIKEVFVYRVPPLRAASGHRAEEWGLANPVFTGILKMVQVGNSCCLRLFKPPPEGELGASPE---LFAECEVRLDNGRTLQVYVEPVIDSSRYFVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEISA 650
            E  +E  L +IKE FVY+VPPLR ASGHRAE+WGLANP+FTG LK+ Q G++  L ++    + +   + E   LF EC + +  G  +  +V+ VIDSSRY+V++ +D  S R   +G+GFRER  AFDLK  L+++V+F++R + A+++SA
Sbjct:    7 ESTVELCLLTIKECFVYKVPPLRTASGHRAEDWGLANPLFTGCLKLFQSGDTLRLAIYAFKDQQKTSITDENIQLFGECPIHVKPGENIIQFVDAVIDSSRYYVVKIKDPKSTRTTLLGVGFREREDAFDLKNSLNEYVKFINRMELASQMSA 159
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: B8BZP8_THAPS (DUF1681 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZP8_THAPS)

HSP 1 Score: 140 bits (353), Expect = 1.230e-35
Identity = 74/189 (39.15%), Postives = 120/189 (63.49%), Query Frame = 3 
Query:  210 IEQPLFSIKEVFVYRVPPLRAASGHRAEEWGLANPVFTGILKMVQVGNSCCLRLF--KPPPEGELGASP-ELFAECEVRLDNGRT---LQVYVEPVIDSSRYFVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEISAVEGERIKEDGESGAAVRQTKDFSIGDGQKLHIELKV 758
            IEQ L  + EVFVYR+PP+R+A GHRAE+W LA+P+ T  L++V+  ++ C+ +   +P  +G  GA+   LFA+  + +D  +    ++ +V PVIDSSRYF L+ +D  SGR A++G+GFRER  A + +  LDD++  L RQK A ++     ++  E+   G     +  FS+ +G+K+H+ +K+
Sbjct:   17 IEQRLLKVDEVFVYRIPPMRSADGHRAEDWNLASPLETCSLRVVRRDDNLCVDIMADRPKKDGPEGATETHLFAQSNMTVDFSKPSHKIEHWVVPVIDSSRYFALKIQDARSGREAFIGVGFRERLDATNFRFSLDDYINSLKRQKEAVKLQKQYQQKSVENQSKGGNSTSSS-FSLKEGEKIHVNIKM 204
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: G4ZQL9_PHYSP (DUF1681 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZQL9_PHYSP)

HSP 1 Score: 139 bits (349), Expect = 6.260e-35
Identity = 84/227 (37.00%), Postives = 130/227 (57.27%), Query Frame = 3 
Query:  210 IEQPLFSIKEVFVYRVPPLRAAS-GHRAEEWGLANPVFTGILKMVQVGNSCCLRLFKP----PPEGELGASPELFAECEVRLDNGRTLQVYVEPVIDSSRYFVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEISAVEGERIKEDGESGAAVRQTKDFSIGDGQKLHIELKVASSDGSTRASRRRARNSGGDNTSSSNKEGSGLRLLAPPP 875
            +E+ LFS K V+ Y+VP  +  S   RA+ W   +P  TG +++VQ G++C ++LF+P      E E  A+P LFA+C +++     L VYV   +DSSRYF+LR ED+ S R A+VGIGF +R++AF+ KA L D+ ++  RQ    ++ A E    ++ G  G++  +  D S+  G  + I LK   ++   RA+ R  R+S G    S  K    + L+ PPP
Sbjct:   10 LERALFSEKGVWFYQVPANQVTSLAPRADAWDPEHPFLTGSVRVVQRGDACFVQLFEPVAAEQDEAETAATPTLFAQCPLQITRELALDVYVHDCVDSSRYFMLRVEDEQSDRRAFVGIGFPDRTAAFNFKATLQDYAKYALRQLEVEQVEAAE----QQTGSGGSSSPKKPDLSLPQGTTIRINLKTNGAEDGERAATRPRRSSSGGGAVSPAK----VPLIPPPP 228
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: W2QCH9_PHYPN (DUF1681 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QCH9_PHYPN)

HSP 1 Score: 136 bits (342), Expect = 5.600e-34
Identity = 78/203 (38.42%), Postives = 119/203 (58.62%), Query Frame = 3 
Query:  210 IEQPLFSIKEVFVYRVPPLRAAS-GHRAEEWGLANPVFTGILKMVQVGNSCCLRLFKP-PPEGELGASPELFAECEVRLDNGRTLQVYVEPVIDSSRYFVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEISAVEGERIKEDGESGAAVRQTKDFSIGDGQKLHIELKVASSDGSTRASRRRARNSG 812
            +E+ LFS K V+ Y+VP  +  S   RA+ W   +P  TG ++++Q G++C ++LF+P   E E  A+P LFA+C +++     L VYV   +DSSRYF+LR ED+ SGR A+VGIGF +R++AF+ KA L D+ ++  RQ    + +A   E        G  +   KD S+  G  + I LK   +D   R++RRR+   G
Sbjct:   10 LERSLFSEKGVWFYQVPAGQVTSLAPRADAWDPEHPFLTGSVRVMQKGDACFVQLFEPVADEAEASATPTLFAQCPLQISRELALDVYVHDCVDSSRYFMLRVEDEQSGRRAFVGIGFPDRTAAFNFKATLQDYAKYALRQLEVEQETAEAAETSV-----GEGMSPKKDLSLPQGTTIRINLKTNGADDGERSTRRRSSGEG 207
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: A0A2R5GHP2_9STRA (Adaptin ear-binding coat-associated protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHP2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 6.550e-33
Identity = 76/187 (40.64%), Postives = 112/187 (59.89%), Query Frame = 3 
Query:  222 LFSIKEVFVYRVPPLRAASGHRAEEWGLANPVFTGILKMVQVGNSCCLRLFKPPPEGELGASPELFAECEVRLDNGRT-----LQVYVEPVIDSSRYFVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEISAVEGERIKEDGESGAAVRQTKDFSIGDGQKLHIELKVASS 767
            L +IKEVFVY++PPL+ + GH A +W L  P  TG L+++  G+   L++ + P E   G  P+LFA C ++LD   +     L  +V+ V+DSSRYFV+R +D+ S RHAY+GIGF+ER SAFDL+A LDD VR   R  R   + A E +   +     A      D S+ +G+ + ++L +  S
Sbjct:   20 LLTIKEVFVYKIPPLQGSRGHHAADWNLDKPALTGQLRVISKGDKVYLQILQLP-ESSAGL-PQLFASCPIKLDTDASKPASKLDYFVQSVVDSSRYFVIRVQDEVSKRHAYIGIGFQERQSAFDLRAALDDEVR---RISRGEHLLAAEDDESNDLPPVDAP--PAVDRSLKEGETIKVKLNIGGS 199
[Close]
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Match: A0A484DTH0_BRELC (DUF1681 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTH0_BRELC)

HSP 1 Score: 133 bits (334), Expect = 6.620e-33
Identity = 76/205 (37.07%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:  207 LIEQPLFSIKEVFVYRVPPLRAAS-GHRAEEWGLANPVFTGILKMVQVGNSCCLRLFKP-PPEGELGASPELFAECEVRLDNGRTLQVYVEPVIDSSRYFVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEISAVEGERIKEDGESGAAVRQTKDFSIGDGQKLHIELKVASSDGSTRASRRRARNSGG 815
            ++E+ LF  K V+ Y+VP  +  +   RA+ W   +P+ TG ++++Q G++C ++LF+P   + E  ASP LFA+C + +    +L VYV   +DSSRYF+LR ED+ SGR A+VGIGF +R+ AF+ KA L D+ +++ RQ     +  +E   +  DG S     Q KD S+  G  + + LK ++++   + +R R+ N+GG
Sbjct:    9 VLERALFCEKNVWFYQVPAGQVTNLAPRADAWDPEHPLLTGSVRVLQKGDACFVQLFEPVSDDAETSASPTLFAQCPLHITRELSLDVYVHDCVDSSRYFMLRVEDETSGRCAFVGIGFPDRTVAFNFKATLLDYAKYVLRQFNVRHMETIEKTEVA-DGMSS----QKKDMSLPKGTTIRMNLKTSANEDGEKLTRHRSCNNGG 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7111.15084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE9_ECTSI8.940e-9781.08DUF1681 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L105_9PHAE4.300e-6776.19DUF1681 domain-containing protein (Fragment) n=1 T... [more]
A0A836CAQ5_9STRA2.880e-5250.24DUF1681 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2SVJ6_9STRA3.830e-4043.54Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3GU29_9STRA3.320e-3646.41Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
B8BZP8_THAPS1.230e-3539.15DUF1681 domain-containing protein n=1 Tax=Thalassi... [more]
G4ZQL9_PHYSP6.260e-3537.00DUF1681 domain-containing protein n=4 Tax=Phytopht... [more]
W2QCH9_PHYPN5.600e-3438.42DUF1681 domain-containing protein n=10 Tax=Phytoph... [more]
A0A2R5GHP2_9STRA6.550e-3340.64Adaptin ear-binding coat-associated protein 1 n=1 ... [more]
A0A484DTH0_BRELC6.620e-3337.07DUF1681 domain-containing protein n=1 Tax=Bremia l... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7111contigH-paniculata_contig7111:2196..9181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.2
Seed ortholog evalue6.7e-79
Seed eggNOG ortholog2880.D8LGE9
Preferred nameNECAP1
KEGG koko:K04554,ko:K20069
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005905,GO:0006810,GO:0006897,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030659,GO:0030662,GO:0030665,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0071840,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805
EggNOG free text desc.endocytosis
EggNOG OGsKOG2500@1,KOG2500@2759
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-16_003790.1
EC2.3.2.23
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04131
Exons6
Model size1166
Cds size1119
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.474967-CDS-H-paniculata_contig7111:2195..26061622930860.474967-CDS-H-paniculata_contig7111:2195..2606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 2196..2606 -
1691481485.1922994-CDS-H-paniculata_contig7111:2195..26061691481485.1922994-CDS-H-paniculata_contig7111:2195..2606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 2196..2606 -
1622930860.4942749-CDS-H-paniculata_contig7111:3454..35531622930860.4942749-CDS-H-paniculata_contig7111:3454..3553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 3455..3553 -
1691481485.2061183-CDS-H-paniculata_contig7111:3454..35531691481485.2061183-CDS-H-paniculata_contig7111:3454..3553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 3455..3553 -
1622930860.5131779-CDS-H-paniculata_contig7111:4160..42641622930860.5131779-CDS-H-paniculata_contig7111:4160..4264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 4161..4264 -
1691481485.2181144-CDS-H-paniculata_contig7111:4160..42641691481485.2181144-CDS-H-paniculata_contig7111:4160..4264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 4161..4264 -
1622930860.5267994-CDS-H-paniculata_contig7111:4885..49441622930860.5267994-CDS-H-paniculata_contig7111:4885..4944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 4886..4944 -
1691481485.2262046-CDS-H-paniculata_contig7111:4885..49441691481485.2262046-CDS-H-paniculata_contig7111:4885..4944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 4886..4944 -
1622930860.542104-CDS-H-paniculata_contig7111:6825..69941622930860.542104-CDS-H-paniculata_contig7111:6825..6994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 6826..6994 -
1691481485.2362263-CDS-H-paniculata_contig7111:6825..69941691481485.2362263-CDS-H-paniculata_contig7111:6825..6994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 6826..6994 -
1622930860.5632026-CDS-H-paniculata_contig7111:8857..91341622930860.5632026-CDS-H-paniculata_contig7111:8857..9134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 8858..9134 -
1691481485.2439818-CDS-H-paniculata_contig7111:8857..91341691481485.2439818-CDS-H-paniculata_contig7111:8857..9134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7111 8858..9134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.5806983-UTR-H-paniculata_contig7111:9134..91811622930860.5806983-UTR-H-paniculata_contig7111:9134..9181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7111 9135..9181 -
1691481485.2537224-UTR-H-paniculata_contig7111:9134..91811691481485.2537224-UTR-H-paniculata_contig7111:9134..9181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7111 9135..9181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7111.15084.1prot_H-paniculata_contig7111.15084.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7111 2196..9134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7111.15084.1

>prot_H-paniculata_contig7111.15084.1 ID=prot_H-paniculata_contig7111.15084.1|Name=mRNA_H-paniculata_contig7111.15084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=373bp
MESRQTPGGALNAASRGGGEDILEESEEGTTAAVTSSESTCSTAAKEEDE
QELLIEQPLFSIKEVFVYRVPPLRAASGHRAEEWGLANPVFTGILKMVQV
GNSCCLRLFKPPPEGELGASPELFAECEVRLDNGRTLQVYVEPVIDSSRY
FVLRCEDKASGRHAYVGIGFRERSSAFDLKAVLDDFVRFLDRQKRAAEIS
AVEGERIKEDGESGAAVRQTKDFSIGDGQKLHIELKVASSDGSTRASRRR
ARNSGGDNTSSSNKEGSGLRLLAPPPLPGAIYRASPALVSPPVTPVTPTT
EQTGITPTVMRPEKSLPGCSAPKAGEGEEDGRGASVVGRDMDVSMGSSTV
SSSSREGGGDDDDEGWGEFESA*
back to top

mRNA from alignment at H-paniculata_contig7111:2196..9181-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7111.15084.1 ID=mRNA_H-paniculata_contig7111.15084.1|Name=mRNA_H-paniculata_contig7111.15084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6986bp|location=Sequence derived from alignment at H-paniculata_contig7111:2196..9181- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTGATAGCTGTAGTATAAATAGATGTACTGGTAATAATAATAGCTATG
GAAAGCAGACAGACACCGGGAGGAGCATTGAATGCAGCTAGCCGTGGCGG
GGGTGAAGATATTCTCGAAGAAAGCGAAGAAGGTACCACCGCTGCGGTTA
CTAGTTCCGAGAGCACCTGTAGTACGGCGGCGAAGGAAGAAGACGAGCAG
GAGCTGTTGATAGAGCAGCCCCTGTTTTCCATCAAGGAAGTGTTCGTTTA
CCGCGTGCCCCCTCTCCGAGCTGCGTCCGGTCACCGTGCTGAGGAATGGG
GCCTAGCAAACCCCGTCTTCACAGGTAAAGCAAGGGACCTCGTGCGGTAG
GTCCTGGATGAAACAATTGATTATCTCGCAATGTCAAAAGTACTGAATGT
TGGCAACTGTCCTTGTAGGCTTTATGGGACTTCTGAGAATACTCTCACTG
CTGATAGAAACCTAGGCACCCAACATAAGCAGCTGTCTTGCACGATTCAG
TAGTTTAGTGTGCGAGTGGCGACTCTCCCTTCCTTCCAACAGCATCTCAG
GCACGTGGCTTCAATTTTTCGTGTGCACGACACTGTTTCATCTGCAAGAC
CGAGGGTGAAATTCCACCGCTATTCGCAGCGAGAAGTTGGAGGCGATACT
ACCTTACCTGTTGGATCAACATTAAATATTCATATTCAAGTTCAAAATGC
TTGCCCGCTTCATATCGACCATTTGGAAGCCAGAATCCATGACCGACTGA
AAAAAATGTTGGTCGTACTCGAGCATCATTTGCCGAAAAGACTTTCTCCC
CCTCTCCGAAAAATGCCCCCCCTCTTCATTCGCGGCGGAAGTTTACTCAT
GTTCTGCTGAAGCGGTACCCTGCTCCAAAAGGTTACTATAATTTACACAG
CATATCTTCTCCCCCTGATAACATTCCGGAGGCTGGAGCCAAATTTCATC
ACCAGTGGTAATATCTGGGGACGCGGATATCTAGTGTGTCTCCTGGTGAT
CGCATCTAATTCGAATCGATTTGGGTGCCATCATCCCGACCTCTGGAAAG
AAAAAATATTACGGGTGATAAATGTATGCAATGTTGTTTGTTTGTATCGC
ACACCCCGGGAAGGCGTCAATTGGGGGTGATAGCATGCATACTGTGTTGA
GCGCCGGTGGTGAAGTGCTGCTGTTTGTGGTGTCATCGAACACTCTCATG
AAACAAGTCTTTGGTTGCATTGTAATGTCATTTTCCAGTTCACGGAGGGT
GACACTACAAGTCATACTCCAATATGGGGCATGGTATCTAACGTATCCTC
CTGTCATGGCGTGTCGGCGCCCAAATCTCATCACTCGGGGTGGTGTATCT
GTGCAGGGCGGGGGGGGGGGGGGGAGATAGATCGAATCTAACGTCAGAGG
TATTAACTTATGTAGACTAGGGTAGGTATTGACCGTATCTGTTCTCAGAA
TAGTGGCCGGCCAAACGTCATTGCAGTAGGGCATTTGCCGACAGCCTTCG
AAAGGAGGGTAAGGAGTACGCCGTTCGTACGCATATCGAGTCAGGTATTC
AGTGACGAATTTGTCGTAAATATGTTTATTCCCATCCCGTCAATCTTGAG
TCCTCATATGCATACCCATTTATGCAAAACCCATACCATGATCCACACAG
ACCAAGAATATCCATTCTTTTTGAACCTACTTGAGTATAGAATCACTCCG
AACGACCCACCATGACCACCAACAACCTATCTTGGCTTATTCGTAGTAAG
TGCTCGTTTGCAATTGACTTCGCCGCATGTCTCTCCGCTTTTGCAGTACG
TACACCCCCCCGCCTGTTCTAATCAGCTCTTGCAGCCCGCCCCCCCCTCG
CTGTTTTCCATTGTTCTCAACCAAGACCGGGTCACATGACAAACATCCAA
TAGCACTATACCACATTTTCCCGCATCCCTCTCTCGCCAACGTTTTATTA
GCCCCATGTTCACCTCCTCGTACAATTGTACCCCCATTATTTTCCCATAC
TGAACCCCCTGCCGATGCGCCCAGGAATACACAGGTATTGGTCCAAGCAG
CGAATTGACGGCGTAAATGAAGGCAACCTACCTGTACACCTACGGTACCG
CAGTCAAGTCAGTATTCTACCGCAGCCTTTAGATTCAGTGCTGACTGACC
GTAATGGTATGATGATAAAACAACGAAAAAAACCCAGGTATACTGAAGAT
GGTGCAAGTAGGCAATTCGTGTTGCCTGCGTTTATTCAAGCCCCCTCCGG
AAGGCGAGCTAGGTGCTTCCCCTGAGCTTTTCGCGGAGTGCGAAGTGCGC
CTGGATAATGGCCGCACCCTTCAGGTGTACGTTGAGCCTGTGATCGACTC
CTCGCGGTGAGGTCGAAGAAAACACCGCAATGTGTATCGTTACTCGCCTT
ATGTGTGTGATGGCGACTTGCTTGAAAGCTCGGGGCTATTGTCTTGCTTT
GTTTTTGTATCAGTATTAATGGTCGTAAACGTTTGTTTTTTTCTATCATG
AAGTTGAACGTTGAGTACATACGATCCCTCCACACATATAGTTTTTCATA
TGTTTTTTTTGGTGTGGAGGGCTGCAATTTAGAAAGTGTTTCTTCTCTCG
GAGGGTCTGGGTCTGTTGTTGCATCTTTCCTGATCAACTGCGAAATATAG
CTGTGGCTGTTACATTTTACAGGGAGTGACTGTTGAAGCGTCGCTTCCGT
CACCTGGCGTATTATACGGCACAGGATCTGAAGGAGATTTTGTGGGCATT
CTTGAAGAAGGGATGCGGAACTTTATTTTGCAATATTTTTCTCAGAAAAG
AGCATCCGTCTTTTATTATTATTTTGTTTCGGGCGCCATTTACAAACCGT
GCACGAATTTAGATTCGATTCCTCGCCGAAACTCCGGCGGTCAAAACTCA
TAATGGTGTACATGCATTGCTCTTGCGTCTGCTCAGGTTTTACGTCGAGT
CTGCGAAGGCACGCCCCTCTTTGGTGTTGTTCGTTGTTTTGACTGTTTAG
CGCCTCTGGTGTCATTGCATTGTCTCAGACTACCTGTAAAAAGCGATTGT
CGCGGGGGACGTGTTAAAGTGCTCACCTCTCTGAGGAATAAATAACTCTG
CTCTGTTAAAGGAAATGTAGACATGTTTGGGGGAATACCTGAATGTGGAA
GCAGCGGAAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAAAAAGAA
AAAAAAGTGCTCACCTCTCAGACGAATATTAATAACTTGAAGCATCTGCG
AAAAAAAACACGTGGGACCAATTCCCTCTGTTCAGAATGTGCGAGCACCT
GGAATACAAAATTGGCCATTGTTTATTCGTTTACTGTTTTTGATATTTTG
AGTACTGTGGAAATGATGATGACTTTCCTCGCGGGTATACGTTGGGTGAT
TATTTTCCCTTTTCAATATGGTCGGCCACCATGTGAGCCCTCCTGTTTTA
CAAGTTTTTTTTCTTGGAAAACTGCATTCTAGGGATAAGCTTTCTTAAGT
CTTGCTTTCCTTTTGGAAGACTTCAGCCTACGGGCAACCGGAACCTGAAC
GACGCGCGGCGAGATGTTATCGTTTCTATGCTTTCGTGCACCACTATTGT
TGCGAGTATTTTTTTAGCGTTTACCTTTTTGGTGTATTTTTGTTGGGGAT
TGAGCCGGCGGCCTTCAGGACAAGAAGCAGATAGGTTATCTATCGGTGTC
GCCAATGTGAAAATATGAGGGTAACTATCCTCGACAGACGCTGGGTGATT
ATTACCCTTTTAAAGAAGACTACCGTAGCATCCACGGACCTACGTCCGAA
CGGGTAGGGTAGCTCGTCAACTGAGCATGACTGGAAGTCTAGTCAGAGGT
CTTTTAGTGGGTGCAACCCCCACACTGCCTACCTGGTTCAGCCGAACCGG
GGTGGCGCCTACCCCGCAGAGGCACAGATAACTCTGTTCTGTAAAAGGAA
ATGTAGACGTACCTCGGTAGGGAAGCATCGGTAAAGGTTTTTGCCTTAGC
CTTCCGGGTGTTAAAAAAAAAAACACCATAGTATTCGTAGATGACCTGGG
ACAAACCGAACAATCGTGTTCATGCTGAACCAACCTCCAGGTGAACACGT
TTTTTTTCGTCGTGAACGCTTGAAATATTCGTACTTTCTCGGGGGATGTA
AAGTTTACCCCCGGCGCCCCCGCCCCGCCTCCGCCCTCGTCTGTGTTAAT
CCTTTCTCGTGTATGCTTGTGTCTATCTGGCGTGAAGTTACTTCGTGCTT
CGATGTGAGGACAAGGCATCCGGACGACACGCGTATGTCGGCATAGGTAC
TAATAATGGCCACGTGAACATTCCCTGATAAAGGCAGTCAAGAGTGCAGT
TTTGTTTTGCTCGTTCCTCGTGTGTGTGTGTGTCTCTATATATATCTGTG
TATGTAGTCTATGGATGCGTTTGGTTACCCTACGCTATACACTTGAGGTT
TGCCCTTGCCGTTTCTAGGGTTGGATGATGAGGAAGGAGCCTGGAACAAG
TGGTCATGGGCACTGCACTTCGTAGAGTTTCTTGTCCCGGCGCTGTCGCC
GCCGCTCACTTGGAGTCACCCCCCCCGCCTCCACATATTGCACCCTCTTG
CGAAAAACCGAACATACGAGGAGGGGTAGATACTGCATCCAGGGTGGGAA
CTGTTTTTTCAGTAGGAATGATCCATCTGGCATTTCGATTACTCGACAGG
TCCAATCGCTTGTTATTCAGTGGAACACCTGTGTCGTAATTCTTGGTTTC
GTAACATGCGAGCACCGATTACGACAATAGCAAGCAAGACCAAAGGATAT
TTGTTGTTGTTGTTTTTGTGCTGTTGTTGCTGCTGCTGATGTTAATTGTT
TTGATAATCCCCGCTCCTGCCCCTTCCCCCCCTCCCACCCCAAAATACGT
AAAAATAACGGCGAAAGGGTTCCGGGAACGAAGCTCTGCCTTTGACCTGA
AAGCTGTCCTGGATGACTTCGTGCGCTTTCTTGACCGTCAAAAGCGGGCG
GCTGAAATATCAGCTGTAGAGGTGCGCGGCGGCCGCTATCGTCCTGTTTT
GTTAATTTTTTTCGTATCGCTTGACTTGGTAGTATTTTTATTATTATTCT
CTCGCTCTATTGAGTTCGTCGTTGTACTCCAGGGCGCTGGCCACCCCGAT
CGACGCCCTTTCTTGGCTTTTTTGTTCCTGTTAGCCCCCTTTTTTTTCGT
CCCCTTGCCCCCCTCCCTCCCTCCCACAGAGCCATTTGATCCTACTTTTT
ATTGGTGGTCCTAATTGTCCCTACTCTGGAAAAATATCACTCAAAGCGGT
AAGAGTACGGACGCAAGTTCAGCGTTTTAGCTTTTGCGCCGCACTGTTCC
CCGCGCTATAAATAGGCCGATCGACTAACCTGCTGGGCAGCGTTTACCCG
GGGTCAACAGGTCCTCTCATTTCTTCCCGCGTCGTGGTCCCTCTCCCTCT
TCACCACTGCCTTGTTTTAGGTATGTTGTGTCTTTTTCTACCTTCGTGTA
TTTAACCAGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTGAGTGTATTTGTAAAATTATTACGCCCGTAGTTTATTTTTTA
TTTTTTTCAATTCTTGTGGTCTTTGCAGGGAGAGAGAATAAAGGAAGACG
GAGAATCTGGGGCAGCTGTGCGGCAGACGAAAGATTTTTCCATTGGGGAC
GGGCAGAAACTGCACATTGAGCTGAAGGTGCGTGGTCGAATCTCAGTTGT
AGGGTTTTGATTGCGGAGAGTTCTAAGTATATTTCCACTTCTCCCTTGTG
TAGTCTTTTTTCAATTCGCCGACTTAATTACCGCACCTGCACTAAACACT
ACGGCCGGCGGTAGAGCCCCTGATAAGGAAGTGAAAACATCTGCGGGAAA
ACAACGTCGCCGTACATTTTTTCCTGATTATTATTTTGACTATTATTACG
ACGTGTGGGAAACGCATGTGATGTACGATGCATTTGGAGAATTGCTGTGA
GAGGCACACGAAGGGAGAGATACGAACCTCAGCTCTCTGATGATACAGGT
ATTCCCTTCGTACAAGGAGTCCTGCACTCGTGGTAAACGAAGTGGAAAGG
GACAATGCAAAAACATCTTATTAGGTGCAACTGTTTGTTTTTTTCTCCAT
ATTTGTATATTGTGTTCAGAACCAAACTTTGGGTCTAATTTCGTTCGAGA
ACCCTAAAAATGTTAAGAAAGACCTTAAAAAAAAGTTTAGAATGATTAAG
TATGCAACTGTTAGCGAGATATCGGCCCTTGAAAGTAGAAAAGCGAAGGT
TTTTGGGCGCTCTAGAGTAGGCATCTTTTTCTCACTCGAGTTCCTGTTTT
TGTTAGTGTGTAATTTATTTATTTTCTCGATGGCATTTGGCGTTAGTTCG
GTTTTCTCCCTGCACCCCCCGTGGTATTGGAGGACTTCTTTCACCAATCC
TCATTCCTCCCTCCCCTTATCTTCGAACCCGACCCAATTTGACGCGCTGA
CCAAACTGTATACTTTGTCAACGTTTTTTTCGTCGCCCTCTCCTTTTCTC
TGCCTTTCGGGGCCTCTCTCGGCAGGTTGCCTCGAGCGACGGCTCGACGC
GAGCCTCGCGTCGCCGCGCACGAAATTCGGGAGGTGATAACACCTCCTCC
AGCAACAAAGAAGGGAGCGGCTTGAGACTGCTGGCACCTCCCCCGCTACC
CGGGGCAATTTACAGAGCCTCCCCGGCGTTGGTTTCGCCGCCGGTGACAC
CAGTTACGCCGACAACGGAGCAAACCGGTATCACGCCGACTGTTATGAGA
CCGGAAAAATCATTACCGGGGTGTTCGGCACCCAAGGCCGGCGAAGGGGA
AGAGGACGGACGGGGTGCTAGTGTTGTCGGCAGGGATATGGATGTTTCTA
TGGGGTCGAGTACCGTCAGCAGTAGTAGTCGAGAAGGGGGGGGCGATGAT
GATGACGAGGGGTGGGGGGAATTTGAGTCGGCGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7111:2196..9181-

>mRNA_H-paniculata_contig7111.15084.1 ID=mRNA_H-paniculata_contig7111.15084.1|Name=mRNA_H-paniculata_contig7111.15084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2238bp|location=Sequence derived from alignment at H-paniculata_contig7111:2196..9181- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAGCAGACAGACACCGGGAGGAGCATTGAATGCAGCTAGCCGTGG
CGGGGGTGAAGATATTCTCGAAGAAAGCGAAGAAGGTACCACCGCTGCGG
TTACTAGTTCCGAGAGCACCTGTAGTACGGCGGCGAAGGAAGAAGACGAG
CAGGAGCTGTTGATAGAGCAGCCCCTGTTTTCCATCAAGGAAGTGTTCGT
TTACCGCGTGCCCCCTCTCCGAGCTGCGTCCGGTCACCGTGCTGAGGAAT
GGGGCCTAGCAAACCCCGTCTTCACAGATGGAAAGCAGACAGACACCGGG
AGGAGCATTGAATGCAGCTAGCCGTGGCGGGGGTGAAGATATTCTCGAAG
AAAGCGAAGAAGGTACCACCGCTGCGGTTACTAGTTCCGAGAGCACCTGT
AGTACGGCGGCGAAGGAAGAAGACGAGCAGGAGCTGTTGATAGAGCAGCC
CCTGTTTTCCATCAAGGAAGTGTTCGTTTACCGCGTGCCCCCTCTCCGAG
CTGCGTCCGGTCACCGTGCTGAGGAATGGGGCCTAGCAAACCCCGTCTTC
ACAGGTATACTGAAGATGGTGCAAGTAGGCAATTCGTGTTGCCTGCGTTT
ATTCAAGCCCCCTCCGGAAGGCGAGCTAGGTGCTTCCCCTGAGCTTTTCG
CGGAGTGCGAAGTGCGCCTGGATAATGGCCGCACCCTTCAGGTGTACGTT
GAGCCTGTGATCGACTCCTCGCGGTATACTGAAGATGGTGCAAGTAGGCA
ATTCGTGTTGCCTGCGTTTATTCAAGCCCCCTCCGGAAGGCGAGCTAGGT
GCTTCCCCTGAGCTTTTCGCGGAGTGCGAAGTGCGCCTGGATAATGGCCG
CACCCTTCAGGTGTACGTTGAGCCTGTGATCGACTCCTCGCGTTACTTCG
TGCTTCGATGTGAGGACAAGGCATCCGGACGACACGCGTATGTCGGCATA
GTTACTTCGTGCTTCGATGTGAGGACAAGGCATCCGGACGACACGCGTAT
GTCGGCATAGGGTTCCGGGAACGAAGCTCTGCCTTTGACCTGAAAGCTGT
CCTGGATGACTTCGTGCGCTTTCTTGACCGTCAAAAGCGGGCGGCTGAAA
TATCAGCTGTAGAGGGTTCCGGGAACGAAGCTCTGCCTTTGACCTGAAAG
CTGTCCTGGATGACTTCGTGCGCTTTCTTGACCGTCAAAAGCGGGCGGCT
GAAATATCAGCTGTAGAGGGAGAGAGAATAAAGGAAGACGGAGAATCTGG
GGCAGCTGTGCGGCAGACGAAAGATTTTTCCATTGGGGACGGGCAGAAAC
TGCACATTGAGCTGAAGGGAGAGAGAATAAAGGAAGACGGAGAATCTGGG
GCAGCTGTGCGGCAGACGAAAGATTTTTCCATTGGGGACGGGCAGAAACT
GCACATTGAGCTGAAGGTTGCCTCGAGCGACGGCTCGACGCGAGCCTCGC
GTCGCCGCGCACGAAATTCGGGAGGTGATAACACCTCCTCCAGCAACAAA
GAAGGGAGCGGCTTGAGACTGCTGGCACCTCCCCCGCTACCCGGGGCAAT
TTACAGAGCCTCCCCGGCGTTGGTTTCGCCGCCGGTGACACCAGTTACGC
CGACAACGGAGCAAACCGGTATCACGCCGACTGTTATGAGACCGGAAAAA
TCATTACCGGGGTGTTCGGCACCCAAGGCCGGCGAAGGGGAAGAGGACGG
ACGGGGTGCTAGTGTTGTCGGCAGGGATATGGATGTTTCTATGGGGTCGA
GTACCGTCAGCAGTAGTAGTCGAGAAGGGGGGGGCGATGATGATGACGAG
GGGTGGGGGGAATTTGAGTCGGCGTGAGTTGCCTCGAGCGACGGCTCGAC
GCGAGCCTCGCGTCGCCGCGCACGAAATTCGGGAGGTGATAACACCTCCT
CCAGCAACAAAGAAGGGAGCGGCTTGAGACTGCTGGCACCTCCCCCGCTA
CCCGGGGCAATTTACAGAGCCTCCCCGGCGTTGGTTTCGCCGCCGGTGAC
ACCAGTTACGCCGACAACGGAGCAAACCGGTATCACGCCGACTGTTATGA
GACCGGAAAAATCATTACCGGGGTGTTCGGCACCCAAGGCCGGCGAAGGG
GAAGAGGACGGACGGGGTGCTAGTGTTGTCGGCAGGGATATGGATGTTTC
TATGGGGTCGAGTACCGTCAGCAGTAGTAGTCGAGAAGGGGGGGGCGATG
ATGATGACGAGGGGTGGGGGGAATTTGAGTCGGCGTGA
back to top