mRNA_H-paniculata_contig71058.15075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig71058.15075.1
Unique NamemRNA_H-paniculata_contig71058.15075.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71058.15075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig71058contigH-paniculata_contig71058:50..368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.253082-CDS-H-paniculata_contig71058:49..1031622930859.253082-CDS-H-paniculata_contig71058:49..103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71058 50..103 -
1691481484.6387126-CDS-H-paniculata_contig71058:49..1031691481484.6387126-CDS-H-paniculata_contig71058:49..103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71058 50..103 -
1622930859.2663896-CDS-H-paniculata_contig71058:161..3681622930859.2663896-CDS-H-paniculata_contig71058:161..368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71058 162..368 -
1691481484.65041-CDS-H-paniculata_contig71058:161..3681691481484.65041-CDS-H-paniculata_contig71058:161..368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71058 162..368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig71058.15075.1prot_H-paniculata_contig71058.15075.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig71058 50..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig71058.15075.1

>prot_H-paniculata_contig71058.15075.1 ID=prot_H-paniculata_contig71058.15075.1|Name=mRNA_H-paniculata_contig71058.15075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
CSDLVLPCRIGSGADKLYASRRRASVSARAGGETSPEIAPLSRLSCELVD
DAAPDADDESPEADDEAPEPTLKMKKTTMKMRKTLR*
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mRNA from alignment at H-paniculata_contig71058:50..368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig71058.15075.1 ID=mRNA_H-paniculata_contig71058.15075.1|Name=mRNA_H-paniculata_contig71058.15075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=319bp|location=Sequence derived from alignment at H-paniculata_contig71058:50..368- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTCTGATCTAGTCCTCCCCTGCCGGATCGGGTCGGGCGCCGATAAGTT
ATACGCTTCAAGGCGGCGCGCCTCCGTATCCGCAAGGGCGGGAGGGGAAA
CCTCCCCAGAAATCGCTCCGTTGTCGAGACTGTCTTGCGAACTTGTAGAC
GACGCAGCTCCAGACGCAGACGACGAATCTCCAGAAGCAGACGACGAAGC
TCCAGAAGCAGACGACGAATCTCCAGAAGCAGACGACGAATCAGACGACG
AAGCTGTTGAGGAAGCCGACGCTGAAGATGAAGAAAACGACGATGAAGAT
GAGGAAGACGTTGCGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig71058:50..368-

>mRNA_H-paniculata_contig71058.15075.1 ID=mRNA_H-paniculata_contig71058.15075.1|Name=mRNA_H-paniculata_contig71058.15075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig71058:50..368- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTCTGATCTAGTCCTCCCCTGCCGGATCGGGTCGGGCGCCGATAAGTT
ATACGCTTCAAGGCGGCGCGCCTCCGTATCCGCAAGGGCGGGAGGGGAAA
CCTCCCCAGAAATCGCTCCGTTGTCGAGACTGTCTTGCGAACTTGTAGAC
GACGCAGCTCCAGACGCAGACGACGAATCTCCAGAAGCAGACGACGAAGC
TCCAGAATGTTCTGATCTAGTCCTCCCCTGCCGGATCGGGTCGGGCGCCG
ATAAGTTATACGCTTCAAGGCGGCGCGCCTCCGTATCCGCAAGGGCGGGA
GGGGAAACCTCCCCAGAAATCGCTCCGTTGTCGAGACTGTCTTGCGAACT
TGTAGACGACGCAGCTCCAGACGCAGACGACGAATCTCCAGAAGCAGACG
ACGAAGCTCCAGAACCGACGCTGAAGATGAAGAAAACGACGATGAAGATG
AGGAAGACGTTGCGGTAGCCGACGCTGAAGATGAAGAAAACGACGATGAA
GATGAGGAAGACGTTGCGGTAG
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