mRNA_H-paniculata_contig7104.15073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7104.15073.1
Unique NamemRNA_H-paniculata_contig7104.15073.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: D7G0N6_ECTSI (Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N6_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 8.900e-37
Identity = 70/101 (69.31%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:  487 KGMLAPVPRPRHPKKV--HFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAWV 783
            +G  + +P P  P+KV  HFKPIANAPILRK+KF V S+W C+EL  SLR+ LQ+SD TPLF+YC SAFEPSPDQ+L+DLYKCF+VNKELL++YSITEAWV
Sbjct:  131 RGETSRIPPPATPEKVKVHFKPIANAPILRKSKFQVNSAWNCSELEASLRSMLQISDTTPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAWV 231
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: A0A835ZER3_9STRA (Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.110e-25
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:  529 KVHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAW 780
            ++HF PI+NAPILR+TKF V  SWT  +L+ SLR QL+L  +TPLFVYC SAF PSPDQ L +L+ CF    EL+++YS++EAW
Sbjct:    2 RIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAW 85
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: A0A7S2CZJ6_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CZJ6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.840e-18
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:  529 KVHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAW 780
            +VHF+ + +API+RK KF + +    A +   LR QL+L + TPLFVYC SAF PSPDQ L DLY+CF  + EL+++Y + EAW
Sbjct:   43 RVHFQAVGSAPIMRKNKFQIGAHERFATIPKFLRKQLRLDENTPLFVYCNSAFCPSPDQRLQDLYQCFQRSNELVLNYCVQEAW 126
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: A0A1R2D493_9CILI (Ubiquitin-like protein ATG12 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D493_9CILI)

HSP 1 Score: 79.3 bits (194), Expect = 1.460e-14
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  532 VHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAW 780
            V+ KP+ANAPIL+KTKF + S      +   + +QL   D   +F+YC S+F PS D  ++DL+ CF V  EL+++Y+ITEAW
Sbjct:   16 VNLKPVANAPILKKTKFKIASDKPFGSIINFVCSQLGGKDR--VFLYCNSSFSPSADSVISDLFNCFKVGNELIINYAITEAW 96
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: B8C4Q5_THAPS (Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4Q5_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 3.180e-14
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  529 KVHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAW 780
            KVHF  + +APIL+K+KF +            LR  L+L  A  LF+Y  +AF PSPD+ + DLY CF V  EL+V YS+ EAW
Sbjct:    7 KVHFVAVGSAPILKKSKFLIGEEDEFGVATAFLRRLLRLDSAPSLFLYINAAFVPSPDERIGDLYDCFGVRGELVVHYSLQEAW 90
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: A0A4P9YW55_9FUNG (Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YW55_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 7.130e-14
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:  532 VHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAW 780
            V F+   NAPIL++ +F + +S     +   LR +L+L    PLF+Y  S F P+PD+ +++L+KCF+V+ +L+++YSIT AW
Sbjct:    3 VRFRAAGNAPILKENRFQINASHRFHTVAVFLRKELRLKPQDPLFLYINSVFAPAPDEVMSNLHKCFNVDGQLIINYSITPAW 85
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: M5FQI1_DACPD (Ubiquitin-like protein ATG12 n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5FQI1_DACPD)

HSP 1 Score: 76.3 bits (186), Expect = 3.790e-13
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  529 KVHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAW 780
            KV FK I NAPI+R+  + + +S     +   LR +L    A PLF Y  SAF P+PD T+A+LYKCF     L+V+YS T AW
Sbjct:   41 KVRFKAIGNAPIMRQNYYRITASNRFQAVIQFLRKELGWKAADPLFTYINSAFSPTPDDTVANLYKCFATEGHLIVNYSSTAAW 124
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: A0A8J5XC65_DIALT (Ubiquitin-like protein ATG12 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XC65_DIALT)

HSP 1 Score: 74.7 bits (182), Expect = 6.490e-13
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:  532 VHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAW 780
            V F+ +  AP LR++KF + +      + T LR QLQ +DA  LFVY  +AF PSPD+ +AD+ +CFHV+  L + Y  T AW
Sbjct:   15 VSFRNVGAAPALRQSKFRIDAEQRFGAVTTFLRKQLQTADAESLFVYVNAAFAPSPDELIADVARCFHVDGVLSLHYCTTPAW 97
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: A0A8H7RGH8_9FUNG (Ubiquitin-like protein ATG12 n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RGH8_9FUNG)

HSP 1 Score: 75.1 bits (183), Expect = 6.710e-13
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  532 VHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAW 780
            V F+ I NAPIL++  + + +S+    +   LR +L+   A PLF+Y  SAF PSPD+T+++LYKCF+ +  L+++Y  T AW
Sbjct:   28 VVFQAIGNAPILKQKVYKLTASYKFQTVIQFLRKELRYQGADPLFLYINSAFAPSPDETVSNLYKCFNTDGHLIINYCTTAAW 110
[Close]
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Match: UPI000644891C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644891C)

HSP 1 Score: 75.5 bits (184), Expect = 1.200e-12
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:  532 VHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQLSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAW 780
            ++FK   +AP L++ KF + ++ +   +  +LR QL+L  + PLF++    F+PSPD+ L DL+KCF VN +L+++YS   AW
Sbjct:   63 IYFKNAGSAPALKQKKFKLQATLSFQHVIDNLRKQLKLKSSEPLFLFVNQIFQPSPDECLGDLFKCFSVNDQLVINYSSAPAW 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7104.15073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0N6_ECTSI8.900e-3769.31Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus si... [more]
A0A835ZER3_9STRA2.110e-2559.52Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Tr... [more]
A0A7S2CZJ6_9STRA1.840e-1851.19Ubiquitin-like protein ATG12 n=1 Tax=Dictyocha spe... [more]
A0A1R2D493_9CILI1.460e-1445.78Ubiquitin-like protein ATG12 n=1 Tax=Stentor coeru... [more]
B8C4Q5_THAPS3.180e-1446.43Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Th... [more]
A0A4P9YW55_9FUNG7.130e-1440.96Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Sy... [more]
M5FQI1_DACPD3.790e-1346.43Ubiquitin-like protein ATG12 n=1 Tax=Dacryopinax p... [more]
A0A8J5XC65_DIALT6.490e-1344.58Ubiquitin-like protein ATG12 n=1 Tax=Diacronema lu... [more]
A0A8H7RGH8_9FUNG6.710e-1342.17Ubiquitin-like protein ATG12 n=1 Tax=Mucor saturni... [more]
UPI000644891C1.200e-1239.76hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7104contigH-paniculata_contig7104:6945..11823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue3.2e-33
Seed eggNOG ortholog2880.D7G0N6
Preferred nameATG12
KEGG koko:K08336
KEGG Pathwayko04068,ko04136,ko04138,ko04140,ko04621,ko04622,map04068,map04136,map04138,map04140,map04621,map04622
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0002165,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0007568,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009653,GO:0009791,GO:0009886,GO:0009987,GO:0009991,GO:0010259,GO:0010623,GO:0012501,GO:0012506,GO:0015980,GO:0016020,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0016740,GO:0018410,GO:0019538,GO:0019776,GO:0022411,GO:0022607,GO:0030139,GO:0030154,GO:0030234,GO:0030659,GO:0030666,GO:0030670,GO:0031090,GO:0031386,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034045,GO:0034274,GO:0034613,GO:0034645,GO:0034727,GO:0035069,GO:0035096,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044042,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0044805,GO:0045335,GO:0048468,GO:0048707,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051179,GO:0051641,GO:0051716,GO:0055114,GO:0060033,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1903008,GO:1905037,GO:1990234
EggNOG free text desc.autophagosome assembly
EggNOG OGsKOG3439@1,KOG3439@2759
Ec32 ortholog descriptionAutophagy-related protein 12
Ec32 orthologEc-14_001670.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04131
Exons5
Model size1370
Cds size294
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930858.971758-UTR-H-paniculata_contig7104:6944..75281622930858.971758-UTR-H-paniculata_contig7104:6944..7528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7104 6945..7528 -
1691481484.5126748-UTR-H-paniculata_contig7104:6944..75281691481484.5126748-UTR-H-paniculata_contig7104:6944..7528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7104 6945..7528 -
1622930859.106743-UTR-H-paniculata_contig7104:11331..118231622930859.106743-UTR-H-paniculata_contig7104:11331..11823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7104 11332..11823 -
1691481484.5900083-UTR-H-paniculata_contig7104:11331..118231691481484.5900083-UTR-H-paniculata_contig7104:11331..11823Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7104 11332..11823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930859.0172203-CDS-H-paniculata_contig7104:7528..75881622930859.0172203-CDS-H-paniculata_contig7104:7528..7588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 7529..7588 -
1691481484.5265956-CDS-H-paniculata_contig7104:7528..75881691481484.5265956-CDS-H-paniculata_contig7104:7528..7588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 7529..7588 -
1622930859.0363019-CDS-H-paniculata_contig7104:8174..82371622930859.0363019-CDS-H-paniculata_contig7104:8174..8237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 8175..8237 -
1691481484.5391538-CDS-H-paniculata_contig7104:8174..82371691481484.5391538-CDS-H-paniculata_contig7104:8174..8237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 8175..8237 -
1622930859.0599103-CDS-H-paniculata_contig7104:8819..88701622930859.0599103-CDS-H-paniculata_contig7104:8819..8870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 8820..8870 -
1691481484.5536635-CDS-H-paniculata_contig7104:8819..88701691481484.5536635-CDS-H-paniculata_contig7104:8819..8870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 8820..8870 -
1622930859.0799894-CDS-H-paniculata_contig7104:9905..99861622930859.0799894-CDS-H-paniculata_contig7104:9905..9986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 9906..9986 -
1691481484.5640864-CDS-H-paniculata_contig7104:9905..99861691481484.5640864-CDS-H-paniculata_contig7104:9905..9986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 9906..9986 -
1622930859.0943468-CDS-H-paniculata_contig7104:11292..113311622930859.0943468-CDS-H-paniculata_contig7104:11292..11331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 11293..11331 -
1691481484.5741532-CDS-H-paniculata_contig7104:11292..113311691481484.5741532-CDS-H-paniculata_contig7104:11292..11331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 11293..11331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7104.15073.1prot_H-paniculata_contig7104.15073.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7104 7529..11331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7104.15073.1

>prot_H-paniculata_contig7104.15073.1 ID=prot_H-paniculata_contig7104.15073.1|Name=mRNA_H-paniculata_contig7104.15073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MLAPVPRPRHPKKVHFKPIANAPILRKTKFFVLSSWTCAELRTSLRNQLQ
LSDATPLFVYCCSAFEPSPDQTLADLYKCFHVNKELLVSYSITEAWV*
back to top

mRNA from alignment at H-paniculata_contig7104:6945..11823-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7104.15073.1 ID=mRNA_H-paniculata_contig7104.15073.1|Name=mRNA_H-paniculata_contig7104.15073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4879bp|location=Sequence derived from alignment at H-paniculata_contig7104:6945..11823- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTGGTTCAGCCGAACCGGGGTGGCGCCTACCCCGCAGAGGAATAAATA
ACTCTGTTCTGTTGAAGGAAATATAGAAATACTCAAGTATGGAAGCATCG
GTAAAGGTTTTTGCCTTAGCCTTCCCGGGGTTATAAAAAAACAAAAAAAA
TACAAGGTCCTGCGATAGTTTAATTTGCCGTAACGGGTTTACATTCATTC
GCGTGCAGCAGTATACTGAGATAGTACAGCATTTTTCATAGTGATCTGAT
GCGCTTAATTTTCCTTGCGCGGTTGGAGACGAGTGCTCCCATCATTAGGC
CTAAACTTCAAAATGAAATAGATGCTGTTTTGTTGTAGCAGTTTTGTAGT
TATTTTATAGTGATTTTTATTCATTTTGTAGCAATTTTATTGTTTTTGTA
GCGATTTTTTTTCGTGTCTCTGTTTATGCGTTGCTGATCCTGTTCGGCCA
GGGACAGCAAGCTTAATTTTTCGTCGCCGCCTGCCGAAGGGGATGTTGGC
CCCGGTCCCCCGCCCGAGACACCCGAAAAAGGTACAGTACAGACGGTCGT
GTTGGCCGATGCACCTGAGAAAGGTACATGTGCAAACATCTGTACATTAT
ATGATGCATGAACAATACACGCCCATTTATACCCGAAATGTGAAAAGTAA
AATCTCTTGTTATTTTTGGAGATATTACCATAAGGAAGGGCAGCGTGGTT
CACGATGGATTTTTCCAGTCTGTGCTCGAGTACCTTGTGAGAACGAATTC
CCGGATATGGTCCCCTTCATTTATTACGCACGGACTGCGCGGGTTAATAC
AGCCGTGGTTCTACTATTTCGCATATGTATGAATTCAGATGCGATGTCCG
AAGCGAAAGTTCCGTCGTTCTTCCATTGAAAGGGAGGTGTCGACAAATAC
CAGTTTTACAGTAGAGTGATCGGTTGTGACCAAGAGGGATCAGTCCCCTG
TACAGGGTGTCTCGACCCTTCCTGGACACAGGCACCAGCAGTTCCTGAGT
TTGGGATCTTGGACAGGAAAACACGGATCCTAGGTAGGATGCCAATGTAG
TGGGATATCGGTAGGAAATGTGTTCTCTACAGCAGGGCTAAAACCAATGA
TTCGTAGTTTAAAATAGTGAGTCATCACCGTACCCGTGAATTCGCACAAC
GTGTATCTAGAGCGTGTCGAGAGCATGTATCTATTCTCTTTTCATGGAGA
ATTAGTTGATTGCCATTGTTTAAGCATGGCGTCAGTCAAGAGCAGAGCCA
CGTTTAAACCTGTTGACTCGGGTTGTGGCGTGGTTCATGTTCGCTTGCGA
CCCGGTGTTGTATGACGTGCAGTTAGACTCATTTGCTTTCGGTGGAGACT
GTCTCTATGTCTATCGCTTGTGGAAGTTAGTCGCATGTCGTCGCGAATGC
TCTTTTCTCGGACCTATTTCATTGGTCACATGGTGTCGTACCTGTCCTAA
GACAGGGGGCAGATACCCGTTCTACGACACCGATCTTTACCCGTTCTACG
ATACGGGGTGGGTACCTGTCCTGAGATAGGGGGTAAGTACCCCCCCCATT
TTTGTATAAGGGATTATCATATCGAGGAATGGGGCTATATCTTACGCCCT
CTCTTTGGGACTGAACAACACTGTCTGTGAAGAGTACACCCAACGGATCA
ACGTACAGTTTGATCGAAGCAAGTAGGCAGTCCAACATTGGTAGTCAAGT
GTTGTTGGTGTATCATGCCGGTGTTGGAACCTGTCTTGCCGGTATTTTCA
AGCTTGATCATGGTTGCTATTTGCTGCTGTTGTTGTTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGTTCTTGTACAGTCAAGGTACATTTCAAGC
CAATCGCAAATGCTCCCATCTTGCGCAAGACCAAGTTTTTCGTCCTTTCT
TCATGGACCTGTGCTGAGGTAATGCAATGTACGAATCCCCTTTCCCATGT
AGACAGGTAATAAACTTGATCAAGTTATTCTCACGCCGGATTTAGGAGTT
ACAACCCGGGTTCCTTTGATGATCTGCTTGATTTTTCGTTTTGTTTCCAT
GCGGTTTCAAAGACCGTTTCATCATTTTCTGACGCAGATCCATCCATATC
TCGGAAACACTTGGTATTACGATGCCCTTGTCTCCTCGGAAAATTCAAGT
CCTAACTCTTGAAAGCGACTGGAGAATGACCCGTTGGTAGATGTTTTGCT
GAATTCTTGAGAAGTTGGAACGGGAGTGATTCATTGAAGGTATGAACAAT
TTCGGAAAATTCTATAGATTCTTGTAGATGGTTTATCTTCTTTTTTTTTT
GGCTATACCTCTTGAACGACGATGGATTAGGAGTCGAAACACGAATAATT
ATTTTCGCCATAGTGTCGGAAATACGCAGAGAAAGTTTCAGGGCATCAGG
CTGAACTCATTTTATCGTGAAATTTGTACCACATTATCCTCCTAAATAGT
GTACCCGATAGCAGGCGGCGGATAGGGTCATGTTATATAGTGATATGTTG
AAGTGACCCAAGCTACCCCCACAGCAGCACCCGTCATACTCTGAATTTTC
CCTCGCTCTGTGAACGCGGTCTTGCCCCCCCCCCCCTACAATAGTCTGGT
TGTTCCCTTCCCTCCCTGTTTCCCCCCCGAGCCGTTTAGTGATACAGGGG
CGTGTAGAGTATATTGGGTGTTTGACCCGAAAAATGAAAATTTACCCGGG
GGAGAAGGGAGAAACTATAATTTTCAGCCCCTTACTGGGGTCATCATAGT
ACTATCCCCTATCCGATCTTGTAGAAAACCACGTTGTGGAGGTATGATAG
TAATGGTACTGGATACTGGATACTGGATGATGACGCTGCTTATACAGGGC
ATAGATTTTAACGCGGAAGAATTCCCAGGGTGCATTCTGTAAAACGCACC
CAAAAAATCTCATCTCCGTCCCCCCGTCTCCCCGTCTCCCCTGGGCCTGA
CAGTTGAGGACGTCCCTTCGAAATCAGCTGCAGCTGTCGGATGCCACGCC
TCTGGTAAGACAGCTAGACAAGAGAAGTGTAAGGGAAGTGTGTTTTGGGG
ATCTGTAGCTTTTCATTTTTTGGTGGTTGGGTTGGAAGAAGAATGGACTC
AATGGAAAAAAAAAAAAAAAGGAGGAGAGGTTCTGTCTTCTCTTCCTGTG
TCATATTTTGTAGTTCGAGGTAGTATCGAAGATAGATAGATTGATGTTCG
GCAGCGAAACATGGACTTTCGGCAATGAAGGATTTTGGGGGTTTGAGCCA
ACGGAAATCCAAACAAAACGAAGTATGTAGAACTAGGATTTCTATATCGT
TAAATAGAGCATGACACAACAAATGAAGATATATATATATATATATATAT
ATATATATATATGTTTTCGTGCTCATAAATCTGAATCGAGATGGGGGTGT
GAACAGATATGTAAGCTGGTGATGATATCCACGATTTCCTGCTTGGTCCC
CGTGGACGAGGAATGACTGTAGCAATCAATCAATCGATCCATCAATGCGC
GTTGTTGCCTTTTTTGGAGTTCCAGTGTTGAACGCTCGCGTGTTGTGCCC
CACCCTCTCGTCTCCGCACTTTCTGGATTATGACAGTTCGTGTACTGCTG
CAGTGCTTTCGAGCCTAGCCCAGATCAGACCCTCGCCGACCTCTACAAGG
TTAGCAAGTACAACAGCTACTTTATCTAAAACAAATTGGAGCCGGGACTG
CCTAACAAGCTCTCTGGGGCTAGTCGGCATTACTGGTTTTTCTATTACCA
AGTACACGGCGTAACGTTTATGCTCGTTACGAGGTCTGGTTGGTTCCTGA
GCGATTTGAGCTAAGCTTGTGATAACATCGGTAATAATGCAACACGGTCA
GCCATCGTCTGGTTAAGTCATTGATAATCGCCAAAAATTCTAGGGGGGGG
GGGGGGGTTACTGCAGTGGCAGCGGAAGACTTTACCGTTGAAAGAGCACA
TATTTCATCGCATGGCAGATTGCTCTCGACAGTGTACCTAATGATGTAAA
CATATTGATAAGATCTTTCGAATTACAAAACTCTCTGCACCATAAGCGCC
GACGGTTACAAACGTTTCGTCACCGGGAGTTGTCACGTTGAATCCTGTGA
ATTGTAGCTACGGTAAGGATTAAAGATTACACTGCCACTACGGTGTTGAT
GCTTTGCCCCCGATGATGCCTCCACCACCCCTTGTTCTTACTTTTACTCC
GCCCCGCGACCGTTTGTATGTGCTGGAACATGCAGTGCTTTCACGTGAAC
AAGGAGCTGCTGGTGAGCTACAGCATCACAGAGGCTTGGGTTTAACGAGA
GGATTGTGTCCACGGCCGTAGGTGTCTCTTTTATGATGTCACGCGTTTTT
TTGTTTTTTTTTCAAGAGCTGATGTATTATAATAATCCACCAGGGCATTT
GATGCATTCGTCCTCCGTGGTTGTGTTATGGGGGTTAATACATGCGTTGT
ACGGTTGTCTCTTTCTTCGTGTATGAATGTATAGGTCATCCTCTAACTGT
ATCGGTCTTGTTTTCGGCATTTTCCCTGTTGGATCGAGGTTTCGCCGCGA
AATTTGCTGTATTTTTTGTGGTGAACTGAGGGGGTCTGTCCTGCACACCT
GTGTTGCAACCCATGTATAACGAAGAAATAGAGACTGAAAAAACGGAGCT
TGTTTGGCTGGCGGGGACGGGAAATGCGTTTTCGAGAAAACATTTGCTCA
TGTAGCAATCAATACCAGCACAGGCGAAGAGAGCAATCACTCCAAACGAG
CCTTTGCACATGCCATGCCTGGGGACACATGGAAGCGATGTTGGGCAGTG
TATTCACACATTCTGCCAGAATGTGAGACTGAACGAGGTGCACAAAACAA
GATATAACAGTTTTCCCTGCAGACTTGAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7104:6945..11823-

>mRNA_H-paniculata_contig7104.15073.1 ID=mRNA_H-paniculata_contig7104.15073.1|Name=mRNA_H-paniculata_contig7104.15073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig7104:6945..11823- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGCCCCGGTCCCCCGCCCGAGACACCCGAAAAAGATGTTGGCCCC
GGTCCCCCGCCCGAGACACCCGAAAAAGGTACATTTCAAGCCAATCGCAA
ATGCTCCCATCTTGCGCAAGACCAAGTTTTTCGTCCTTTCTTCATGGACC
TGTGCTGAGGTACATTTCAAGCCAATCGCAAATGCTCCCATCTTGCGCAA
GACCAAGTTTTTCGTCCTTTCTTCATGGACCTGTGCTGAGTTGAGGACGT
CCCTTCGAAATCAGCTGCAGCTGTCGGATGCCACGCCTCTGTTGAGGACG
TCCCTTCGAAATCAGCTGCAGCTGTCGGATGCCACGCCTCTGTTCGTGTA
CTGCTGCAGTGCTTTCGAGCCTAGCCCAGATCAGACCCTCGCCGACCTCT
ACAAGTTCGTGTACTGCTGCAGTGCTTTCGAGCCTAGCCCAGATCAGACC
CTCGCCGACCTCTACAAGTGCTTTCACGTGAACAAGGAGCTGCTGGTGAG
CTACAGCATCACAGAGGCTTGGGTTTAATGCTTTCACGTGAACAAGGAGC
TGCTGGTGAGCTACAGCATCACAGAGGCTTGGGTTTAA
back to top