mRNA_H-paniculata_contig7104.15072.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7104.15072.1
Unique NamemRNA_H-paniculata_contig7104.15072.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7104.15072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7104contigH-paniculata_contig7104:5612..6058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7104.15072.1prot_H-paniculata_contig7104.15072.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7104 5674..5985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930858.699053-UTR-H-paniculata_contig7104:5611..56731622930858.699053-UTR-H-paniculata_contig7104:5611..5673Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7104 5612..5673 +
1691481484.4436464-UTR-H-paniculata_contig7104:5611..56731691481484.4436464-UTR-H-paniculata_contig7104:5611..5673Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7104 5612..5673 +
1622930858.7330132-UTR-H-paniculata_contig7104:5985..60581622930858.7330132-UTR-H-paniculata_contig7104:5985..6058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7104 5986..6058 +
1691481484.4610932-UTR-H-paniculata_contig7104:5985..60581691481484.4610932-UTR-H-paniculata_contig7104:5985..6058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7104 5986..6058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930858.7191164-CDS-H-paniculata_contig7104:5673..59851622930858.7191164-CDS-H-paniculata_contig7104:5673..5985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 5674..5985 +
1691481484.453064-CDS-H-paniculata_contig7104:5673..59851691481484.453064-CDS-H-paniculata_contig7104:5673..5985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7104 5674..5985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7104.15072.1

>prot_H-paniculata_contig7104.15072.1 ID=prot_H-paniculata_contig7104.15072.1|Name=mRNA_H-paniculata_contig7104.15072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MKKTEMYSREYNYRYRTNHISVRVPFIAELPHCELYSSTLLKGQITQYLV
FPQGKSPRQNDSEMMMLLRTQTQYLFRKHNQSNHSDPRSEDSIIPIIHPI
GRL*
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mRNA from alignment at H-paniculata_contig7104:5612..6058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7104.15072.1 ID=mRNA_H-paniculata_contig7104.15072.1|Name=mRNA_H-paniculata_contig7104.15072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig7104:5612..6058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGGAATATTATCATTTCACCATTATTTGTTCTGTTTAACATGATAT
TTTGAACAAAAAATGAAAAAAACGGAAATGTATTCTCGAGAATATAATTA
CCGTTACCGTACTAATCACATATCTGTGAGAGTTCCTTTCATCGCCGAAT
TACCCCACTGCGAATTGTACAGCTCAACATTACTTAAAGGACAAATAACA
CAGTATTTGGTGTTTCCACAGGGGAAATCTCCGCGACAAAATGACAGCGA
AATGATGATGCTCCTCCGAACTCAAACCCAATACCTTTTTCGCAAACACA
ATCAGTCCAATCATTCAGACCCGCGATCAGAGGATAGCATCATCCCAATC
ATCCATCCGATCGGTAGATTGTGAGTTGTCTCCAGACGCAAAAAAAATAA
AATTAAACTCTGAAGACCCAATGACCGCTGTGATCCCCATATTACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7104:5612..6058+

>mRNA_H-paniculata_contig7104.15072.1 ID=mRNA_H-paniculata_contig7104.15072.1|Name=mRNA_H-paniculata_contig7104.15072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig7104:5612..6058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAAAACGGAAATGTATTCTCGAGAATATAATTACCGTTACCGTAC
TAATCACATATCTGTGAGAGTTCCTTTCATCGCCGAATTACCCCACTGCG
AATTGTACAGCTCAACATTACTTAAAGGACAAATAACACAGTATTTGGTG
TTTCCACAGGGGAAATCTCCGCGACAAAATGACAGCGAAATGATGATGCT
CCTCCGAACTCAAACCCAATACCTTTTTCGCAAACACAATCAGTCCAATC
ATTCAGACCCGCGATCAGAGGATAGCATCATCCCAATCATCCATCCGATC
GGTAGATTGTGAATGAAAAAAACGGAAATGTATTCTCGAGAATATAATTA
CCGTTACCGTACTAATCACATATCTGTGAGAGTTCCTTTCATCGCCGAAT
TACCCCACTGCGAATTGTACAGCTCAACATTACTTAAAGGACAAATAACA
CAGTATTTGGTGTTTCCACAGGGGAAATCTCCGCGACAAAATGACAGCGA
AATGATGATGCTCCTCCGAACTCAAACCCAATACCTTTTTCGCAAACACA
ATCAGTCCAATCATTCAGACCCGCGATCAGAGGATAGCATCATCCCAATC
ATCCATCCGATCGGTAGATTGTGA
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