mRNA_H-paniculata_contig70917.15053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig70917.15053.1
Unique NamemRNA_H-paniculata_contig70917.15053.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A087T1Z9_STEMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Z9_STEMI)

HSP 1 Score: 90.1 bits (222), Expect = 4.900e-19
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRGDKLDEFKNNRSQRFRMKDLGSLSHVLGI 276
            L+KS+YGLRQS   WN+ L+DFL+  GL R +  PC+YF      E ++++ +YVDDL+I G   +++EFK +  +RF +KDLG  S +L +
Sbjct:  825 LKKSIYGLRQSGRAWNTCLNDFLIQYGLKRSSAKPCIYFCH----EKNIIIGIYVDDLLIVGNMAEINEFKGSIKKRFSVKDLGPASQILSM 912          
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A0J7K7M6_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7M6_LASNI)

HSP 1 Score: 84.7 bits (208), Expect = 3.850e-17
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRGDK-LDEFKNNRSQRFRMKDLGSLSHVLGI 276
            L+KSLYGLRQ+  NW +TLD  L   G    N +PC+Y  R  + E  +L+AVYVDDL+IA +  K +++ K N SQ F ++DLG + H LGI
Sbjct:  997 LKKSLYGLRQAGRNWYATLDKVLRKYGATPSNADPCVY--RIGKNEDLILIAVYVDDLMIASKDIKRMEQLKINLSQEFEIRDLGEIKHCLGI 1087          
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A8J5YH47_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YH47_9ROSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.400e-16
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRGDK--LDEFKNNRSQRFRMKDLGSLSHVLGI 276
            L+K LYGL+ +   W S +D +L+G+G +R  + P LY  +++ G+T L+V+VYVDDL++ G GD+  L +FK    Q F M DLG L++ LG+
Sbjct:   87 LKKPLYGLKHAPRAWYSRIDSYLIGLGFERSLSEPTLYV-KEENGKTQLIVSVYVDDLLVTG-GDQAMLVDFKTKMHQMFEMSDLGKLTYFLGM 178          
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A8J5YZC3_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YZC3_9ROSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.760e-16
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRGDK--LDEFKNNRSQRFRMKDLGSLSHVLGI 276
            L+K+LYGL+Q+   W S +D +L+G+G +R  + P LY  +++ GET L+V+VYVDDL++  RGD+  L +FK    Q F M D G +++ LG+
Sbjct:  228 LKKALYGLKQAPRAWYSRIDSYLIGLGFERSLSEPTLYIKKEN-GETQLIVSVYVDDLLVT-RGDQAILADFKTKMHQMFEMFDFGRMTYFLGM 319          
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 82.4 bits (202), Expect = 2.420e-16
Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRGD-KLDEFKNNRSQRFRMKDLGSLSHVLGI 276
            LR+S+YGL+QS   WNS LD  L  +G  +   +PC+Y    +EG    ++AVYVDD+++AG+ D K++E K   +++F+MKD+G L + LG+
Sbjct:  127 LRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVK--EEGGEIFIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGV 217          
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A8J5ZCY7_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZCY7_9ROSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.500e-16
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRGDK--LDEFKNNRSQRFRMKDLGSLSHVLGI 276
            L+K+LYGL+Q+   W S +D +LVG+G +R  + P LY  + + G+T L+V+VYVDDL++ G GD+  L +FK    Q F M DLG +++ LG+
Sbjct:  912 LKKALYGLKQAPRAWYSRIDSYLVGLGFERSLSEPTLYVKKKN-GKTQLIVSVYVDDLLVTG-GDQAILADFKIKMHQMFEMSDLGEMTYFLGM 1003          
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A6A2XQI6_HIBSY (Cytochrome P450 71A9-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XQI6_HIBSY)

HSP 1 Score: 82.0 bits (201), Expect = 3.400e-16
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRG-DKLDEFKNNRSQRFRMKDLGSLSHVLGI 276
            L KSLYGL+Q+   W    D F++ +G +R N +PC YF R D+ +  +L+ +YVDD+++AG   D ++E K   ++ F MKDLGS + +LG+
Sbjct:  842 LNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRSDDNDFVILL-LYVDDMLVAGPNKDHIEELKAQLAREFEMKDLGSANKILGM 933          
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A6A3APJ8_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3APJ8_HIBSY)

HSP 1 Score: 82.0 bits (201), Expect = 3.400e-16
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRG-DKLDEFKNNRSQRFRMKDLGSLSHVLGI 276
            L KSLYGL+Q+   W    D F++ +G +R NT+PC YF R  + +  +L+ +YVDD+++AG   D ++E K   ++ F MKDLGS + +LG+
Sbjct:  855 LNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNTDPCAYFKRSGDNDFVILL-LYVDDMLVAGPNKDHIEELKEELAREFEMKDLGSTNKILGM 946          
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A7D9H832_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9H832_PARCT)

HSP 1 Score: 80.1 bits (196), Expect = 3.500e-16
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRGD-KLDEFKNNRSQRFRMKDLGSLSHVLGI 276
            LR+S+YGL+QS   WNS LD  L  +G  +   +PC+Y    +EG    ++AVYVDD+++AG+ D K+ E K   +++F+MKD+G L + LG+
Sbjct:  101 LRRSIYGLKQSPRCWNSVLDRKLKNMGFVQITGDPCIYVK--EEGGEIFIIAVYVDDILLAGKNDQKIIEVKQALAEQFQMKDMGQLHYFLGV 191          
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Match: A0A6A3CJQ0_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CJQ0_HIBSY)

HSP 1 Score: 81.6 bits (200), Expect = 4.650e-16
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLLVAVYVDDLVIAGRG-DKLDEFKNNRSQRFRMKDLGSLSHVLG 273
            L KSLYGL+Q+   W    D F++ +G +R N NPC YF R  + +  L++ +YVDD+++AG   D ++E K   ++ F MKDLGS + +LG
Sbjct:  899 LNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNANPCAYFKRSGDNDF-LILLLYVDDMLVAGPNKDHIEELKAQLAREFEMKDLGSANKILG 989          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70917.15053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A087T1Z9_STEMI4.900e-1944.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K7M6_LASNI3.850e-1748.39Retrovirus-related gag-pol polyprotein n=1 Tax=Las... [more]
A0A8J5YH47_9ROSI1.400e-1643.62Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A8J5YZC3_9ROSI1.760e-1643.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT2.420e-1643.01Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8J5ZCY7_9ROSI2.500e-1644.68Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A2XQI6_HIBSY3.400e-1641.94Cytochrome P450 71A9-like n=1 Tax=Hibiscus syriacu... [more]
A0A6A3APJ8_HIBSY3.400e-1641.94Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A7D9H832_PARCT3.500e-1643.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3CJQ0_HIBSY4.650e-1642.39Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70917contigH-paniculata_contig70917:193..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.4e-14
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.9066238-CDS-H-paniculata_contig70917:192..4711622930856.9066238-CDS-H-paniculata_contig70917:192..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70917 193..471 -
1691481483.6473067-CDS-H-paniculata_contig70917:192..4711691481483.6473067-CDS-H-paniculata_contig70917:192..471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70917 193..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70917.15053.1prot_H-paniculata_contig70917.15053.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig70917 193..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig70917.15053.1

>prot_H-paniculata_contig70917.15053.1 ID=prot_H-paniculata_contig70917.15053.1|Name=mRNA_H-paniculata_contig70917.15053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDEGETDLL
VAVYVDDLVIAGRGDKLDEFKNNRSQRFRMKDLGSLSHVLGI*
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mRNA from alignment at H-paniculata_contig70917:193..471-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig70917.15053.1 ID=mRNA_H-paniculata_contig70917.15053.1|Name=mRNA_H-paniculata_contig70917.15053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig70917:193..471- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCGTAAAAGCCTGTATGGCCTGAGGCAGAGCCGCTGGAATTGGAATAG CACCCTTGACGATTTTCTTGTTGGGATAGGACTCGATCGTCCCAATACCA ACCCATGCTTGTACTTTTCTCGCGACGATGAGGGAGAGACAGACCTTCTG GTGGCCGTCTATGTTGACGACCTGGTCATTGCTGGCCGTGGTGATAAACT AGACGAGTTCAAGAATAACAGAAGTCAGCGTTTTAGGATGAAAGACTTGG GCTCTCTCTCGCACGTGTTGGGAATATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig70917:193..471-

>mRNA_H-paniculata_contig70917.15053.1 ID=mRNA_H-paniculata_contig70917.15053.1|Name=mRNA_H-paniculata_contig70917.15053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig70917:193..471- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCGTAAAAGCCTGTATGGCCTGAGGCAGAGCCGCTGGAATTGGAATAG
CACCCTTGACGATTTTCTTGTTGGGATAGGACTCGATCGTCCCAATACCA
ACCCATGCTTGTACTTTTCTCGCGACGATGAGGGAGAGACAGACCTTCTG
GTGGCCGTCTATGTTGACGACCTGGTCATTGCTGGCCGTGGTGATAAACT
AGACGAGTTCAAGAATAACAGAAGTCAGCGTTTTAGGATGAAAGACTTGG
GCTCTCTCTCGCACGTGTTGGGAATATAACTGCGTAAAAGCCTGTATGGC
CTGAGGCAGAGCCGCTGGAATTGGAATAGCACCCTTGACGATTTTCTTGT
TGGGATAGGACTCGATCGTCCCAATACCAACCCATGCTTGTACTTTTCTC
GCGACGATGAGGGAGAGACAGACCTTCTGGTGGCCGTCTATGTTGACGAC
CTGGTCATTGCTGGCCGTGGTGATAAACTAGACGAGTTCAAGAATAACAG
AAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTCGCACGTGTTGG
GAATATAA
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