mRNA_H-paniculata_contig7086.15047.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7086.15047.1 vs. uniprot
Match: D7G900_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G900_ECTSI) HSP 1 Score: 341 bits (875), Expect = 5.200e-101 Identity = 258/725 (35.59%), Postives = 349/725 (48.14%), Query Frame = 1
Query: 7 LRPSARPNLAMLMID-TALVEITPKRLCGRLHSANLVPVECPILVIDNENGVFGATTGEEGNFSQYEGRDVELDPVAPVTCVLTVAHVPPEEPSAVGAMASGVANYAAGAGGVATIKRRVCCFLADGQAQSPAFTSASFVDDWEGQSPVWMDTLLPRGEMKTFTPTVGAGAALRRCSRTVGDGGGGVDGGADAKGRASHAQIKEGAAGAFSSIHEGNDVCEGPGYTSRSTEGSKSPRSRSVDGEESWLANAQANNALSGGGGDGSADSGWSGXXXGAGISLKRTSSEGENAFPSQGGATAAAAGNDTASTAAVCPGGRPFFYPRLQAWAGSFRCRPLALPGFREPSSAVPLEDADTILLIGTHLDML-DKTAAWLGNAL-PNAVILGGLSNCSLVIGDEVYSRKMLRKRRTFGP--EKPLVIGVALKGVRALAVSAKGFGGVGSIFRVDNTIDGSSGNTQARPGKILREVTVVA-EGHAARSTTAGAIFYEEVKKWILLTKYATQRQTVFLGVGSSPEELLCSRGSSGSSAIRSGTCVGDENCDERAIRAEEATGLPPVSVNSVMGQLISLQDNVVPGQYARYMRTQAELSLADTEAAFLSCKRRIAREKGIVLSSVHFTCSVRPDRLEVRCHRVMDLDECQKAREAKGNAEYEAQAPVLCVMALHQQEVVRFCRTMNAPAAGLFCQGELGPLPTLVGGILPNTSRSRLQAFSTCTAVLYWNPNS 2163
L PSARPN MLMID + T + LC R HS+NL+PVECPI+V ++++GV+GA EG++S YEGRD+ELDP P TCVLTVA++PPE G + G+ RV F+A Q+ S +G +PV+ + P V G L V+G E G SS ++ E G + G P RS+ A+T YP+L PSS+VPLEDADT+ L+ H +L +TA WL L + V+LGG + C+L IG +V+ + P + +V+GVAL+GV ALA+SAKG+ GVG +F++D T D G QA GK+LR+VTVV+ EG A R +TA +IF EV + + + + LGV +SP ELL R SG C E+ D+ EEATG PPV+VN G+ ++L D+V PGQ+AR++R+ L L D EAA+ +C RR+ RE G+VLSS+ FTC VR D +E+ RV E G + A V VMALHQQE+VRF +T+NAPAAG+FC E GP+ + GI P T++SR Q +++C AVL WNP S
Sbjct: 15 LTPSARPNFCMLMIDGNVFLSTTLRELCSRFHSSNLIPVECPIVVAESDSGVYGAGVSGEGDYSTYEGRDIELDPPPPTTCVLTVAYIPPE-----GGIDGGLPQP------------RVKTFIASHSFQNTRNDGPSV----DGVAPVFTEC----------APAVTFGTKLAA-----------VNG--------------ENKPGGTSSSASCTNLTEPAGSS-----GPPQPVRRSI-----------------------------------------------------------------RATTVTKSKVASQRVYPKLTP-----------------PSSSVPLEDADTVFLVDDHHPLLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQVFPDPDEKVGNHSRPSIQARVVVGVALRGVHALAISAKGYEGVGPVFKIDTTAD-PQGGPQAEKGKLLRDVTVVSSEGVAVRKSTALSIFQHEVCQ----ASGESYPEKISLGVSASPAELLRCRSGSG-------RC---EDLDDEI--EEEATGAPPVAVNWTFGEAVALDDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRLDHVELSGRRVQQEREQXXXXXPDGG---DGDAVVTRVMALHQQEMVRFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGS 576
BLAST of mRNA_H-paniculata_contig7086.15047.1 vs. uniprot
Match: A0A6H5KTS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTS4_9PHAE) HSP 1 Score: 157 bits (398), Expect = 2.010e-38 Identity = 145/468 (30.98%), Postives = 203/468 (43.38%), Query Frame = 1
Query: 7 LRPSARPNLAMLMID-TALVEITPKRLCGRLHSANLVPVECPILVIDNENGVFGATTGEEGNFSQYEGRDVELDPVAPVTCVLTVAHVPPEEPSAVGAMASGVANYAAGAGGVATIKRRVCCFLADGQAQSPAFTSASFVDDWEGQSPVWMDTLLPRGEMKTFTPTVGAGAALRRCSRTVGDGGGGVDGGADAKGRASHAQIKEGAAGAFSSIHEGNDVCEGPGYTSRSTEGSKSPRSRSVDGEESWLANAQANNALSGGGGDGSADSGWSGXXXGAGISLKRTSSEGENAFPSQGGATAAAAGNDTASTAAVCPGGRPFFYPRLQAWAGSFRCRPLALPGFREPSSAVPLEDADTILLIGTHLDML-DKTAAWLGNAL-PNAVILGGLSNCSLVIGDEVYSRKMLRKRRTFGP--EKPLVIGVALKGVRALAVSAKGFGGVGSIFRVDNTIDGSSGNTQARPGKILR 1395
L PSARPN MLMID + T + LC R HS+NLVPVECPI+V ++++GV+GA EGN S YEGRD+ELDP P TCVLTVA++PPE S GG+ + RV F+A Q+ S +G +PV+ + P V G L V+G E G SS G ++ E G + +S R+ +V AN++ ++ +R YP+L PSS+VPLEDADT+ L+G H +L +TA WL L + V+LGG + C+L IG +++ + R P + +V+GVAL+GV ALA+SAKG+ GVG +F++D T D G QA G++ +
Sbjct: 2 LTPSARPNFCMLMIDGNVFLSRTLRELCSRFHSSNLVPVECPIVVAESDSGVYGAGVSGEGNHSTYEGRDIELDPPPPTTCVLTVAYIPPEGGSD---------------GGLP--QPRVKTFIASHNFQNTRNDGPSV----DGVAPVFTEC----------APAVTFGTKLAA-----------VNG--------------ENKPGGTSSSASGTNLTEPAGSSGPPQPVRRSSRATTV-------ANSK--------------------------VASQRV-------------------------------------YPKLTP-----------------PSSSVPLEDADTVFLVGDHHPLLMARTADWLQKLLGEDTVVLGGSTTCALCIGSQMFPDPEEKVRNYSRPSIQARVVVGVALRGVHALAISAKGYEGVGPVFKIDTTAD-PQGGPQAEKGEVRK 325
BLAST of mRNA_H-paniculata_contig7086.15047.1 vs. uniprot
Match: A0A6H5KT67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT67_9PHAE) HSP 1 Score: 105 bits (262), Expect = 9.640e-23 Identity = 60/131 (45.80%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 1507 QTVFLGVGSSPEELLCSRGSSGSSAIRSGTCVGDENCDERAIRAEEATGLPPVSVNSVMGQLISLQDNVVPGQYARYMRTQAELSLADTEAAFLSCKRRIAREKGIVLSSVHFTCSVRPDRLEVR---CHR 1890
+ ++LGV +SP ELL R SG C E+ DE EEA G PP++VN G+ ++L D+V PGQ+AR++R+ L L D EAA+ +C RR+ RE G+VLSS+ FTC VRPD +EV C+R
Sbjct: 12 EKIYLGVSASPAELLRCRSGSG-------RC---EDLDEEI--EEEARGAPPIAVNWTFGEAVALGDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVEREGGVVLSSISFTCCVRPDHVEVHSVPCNR 130
BLAST of mRNA_H-paniculata_contig7086.15047.1 vs. uniprot
Match: A0A6H5KRG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG6_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 4.350e-13 Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 1996 VVRFCRTMNAPAAGLFCQGELGPLPTLVGGILPNTSRSRLQAFSTCTAVLYWNPNSF 2166
+V+F +T+NAPAAG+FC E GP+ + GI P T++SR Q +++C AVL WNP SF
Sbjct: 1 MVKFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNPGSF 57 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7086.15047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7086.15047.1 >prot_H-paniculata_contig7086.15047.1 ID=prot_H-paniculata_contig7086.15047.1|Name=mRNA_H-paniculata_contig7086.15047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=715bp MLMIDTALVEITPKRLCGRLHSANLVPVECPILVIDNENGVFGATTGEEGback to top mRNA from alignment at H-paniculata_contig7086:3344..11089- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7086.15047.1 ID=mRNA_H-paniculata_contig7086.15047.1|Name=mRNA_H-paniculata_contig7086.15047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7746bp|location=Sequence derived from alignment at H-paniculata_contig7086:3344..11089- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7086:3344..11089- >mRNA_H-paniculata_contig7086.15047.1 ID=mRNA_H-paniculata_contig7086.15047.1|Name=mRNA_H-paniculata_contig7086.15047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4290bp|location=Sequence derived from alignment at H-paniculata_contig7086:3344..11089- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |