mRNA_H-paniculata_contig7078.15037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7078.15037.1
Unique NamemRNA_H-paniculata_contig7078.15037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7078.15037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7078contigH-paniculata_contig7078:1508..1918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size411
Cds size405
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.8110507-UTR-H-paniculata_contig7078:1507..15131622930854.8110507-UTR-H-paniculata_contig7078:1507..1513Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7078 1508..1513 +
1691481482.7005222-UTR-H-paniculata_contig7078:1507..15131691481482.7005222-UTR-H-paniculata_contig7078:1507..1513Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7078 1508..1513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.828424-CDS-H-paniculata_contig7078:1513..19181622930854.828424-CDS-H-paniculata_contig7078:1513..1918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7078 1514..1918 +
1691481482.715255-CDS-H-paniculata_contig7078:1513..19181691481482.715255-CDS-H-paniculata_contig7078:1513..1918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7078 1514..1918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7078.15037.1prot_H-paniculata_contig7078.15037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7078 1514..1918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7078.15037.1

>prot_H-paniculata_contig7078.15037.1 ID=prot_H-paniculata_contig7078.15037.1|Name=mRNA_H-paniculata_contig7078.15037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MEKGRINVNVLVGRLVVTMLALVLILLLLPLLLLLRIVLTTTAPDRLEVR
NFQSTCLENAVGVSCQGICGMSARRGSYLLLHTSVQIVPVILASDCHVSR
LVWLANVAVMVSMNSVWIVALRYVVVTVVQRRFT*
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mRNA from alignment at H-paniculata_contig7078:1508..1918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7078.15037.1 ID=mRNA_H-paniculata_contig7078.15037.1|Name=mRNA_H-paniculata_contig7078.15037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at H-paniculata_contig7078:1508..1918+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGAATGGAAAAAGGAAGAATCAACGTGAACGTTTTGGTAGGAAGACT
GGTTGTAACAATGCTAGCACTGGTTCTGATTCTGCTGCTGCTGCCGCTGC
TTCTACTGCTGCGGATAGTTCTGACAACAACAGCTCCAGATCGACTCGAA
GTTCGAAACTTCCAGTCGACATGCTTGGAAAATGCCGTAGGTGTAAGCTG
CCAGGGTATATGTGGTATGAGTGCGAGGCGAGGGTCATACCTTCTTCTGC
ACACCAGCGTGCAAATTGTTCCGGTAATTCTCGCGAGCGATTGTCATGTG
TCGCGCTTGGTTTGGTTAGCGAATGTCGCAGTGATGGTATCGATGAATTC
GGTTTGGATAGTAGCCTTGAGATATGTCGTAGTAACTGTAGTGCAGCGAC
GTTTCACATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7078:1508..1918+

>mRNA_H-paniculata_contig7078.15037.1 ID=mRNA_H-paniculata_contig7078.15037.1|Name=mRNA_H-paniculata_contig7078.15037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig7078:1508..1918+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAAAGGAAGAATCAACGTGAACGTTTTGGTAGGAAGACTGGTTGT
AACAATGCTAGCACTGGTTCTGATTCTGCTGCTGCTGCCGCTGCTTCTAC
TGCTGCGGATAGTTCTGACAACAACAGCTCCAGATCGACTCGAAGTTCGA
AACTTCCAGTCGACATGCTTGGAAAATGCCGTAGGTGTAAGCTGCCAGGG
TATATGTGGTATGAGTGCGAGGCGAGGGTCATACCTTCTTCTGCACACCA
GCGTGCAAATTGTTCCGGTAATTCTCGCGAGCGATTGTCATGTGTCGCGC
TTGGTTTGGTTAGCGAATGTCGCAGTGATGGTATCGATGAATTCGGTTTG
GATAGTAGCCTTGAGATATGTCGTAGTAACTGTAGTGCAGCGACGTTTCA
CATGAATGGAAAAAGGAAGAATCAACGTGAACGTTTTGGTAGGAAGACTG
GTTGTAACAATGCTAGCACTGGTTCTGATTCTGCTGCTGCTGCCGCTGCT
TCTACTGCTGCGGATAGTTCTGACAACAACAGCTCCAGATCGACTCGAAG
TTCGAAACTTCCAGTCGACATGCTTGGAAAATGCCGTAGGTGTAAGCTGC
CAGGGTATATGTGGTATGAGTGCGAGGCGAGGGTCATACCTTCTTCTGCA
CACCAGCGTGCAAATTGTTCCGGTAATTCTCGCGAGCGATTGTCATGTGT
CGCGCTTGGTTTGGTTAGCGAATGTCGCAGTGATGGTATCGATGAATTCG
GTTTGGATAGTAGCCTTGAGATATGTCGTAGTAACTGTAGTGCAGCGACG
TTTCACATGA
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