mRNA_H-paniculata_contig7078.15036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7078.15036.1
Unique NamemRNA_H-paniculata_contig7078.15036.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: D8LTW4_ECTSI (Fructose-bisphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.540e-39
Identity = 67/73 (91.78%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   10 IHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDLLPLLD 228
            ++GGVFAYPADV+NPNGKLRLLYEGNPIAMIVE+AGG+ATTGFEAIRDVRPQSVHHRIPAFFGS DDLLPLLD
Sbjct:  437 VNGGVFAYPADVRNPNGKLRLLYEGNPIAMIVEEAGGIATTGFEAIRDVRPQSVHHRIPAFFGSPDDLLPLLD 509          
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: A0A6H5K7J4_9PHAE (Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J4_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.630e-38
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   10 IHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDLLPLLD 228
            ++GGVFAYPADV+NPNGKLRLLYEGNPIAMIVE+AGGVATTGFEAIRDVRPQSVHHRIPAFFGS DDLLPLLD
Sbjct: 1683 VNGGVFAYPADVRNPNGKLRLLYEGNPIAMIVEEAGGVATTGFEAIRDVRPQSVHHRIPAFFGSPDDLLPLLD 1755          
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: A0A836CLE5_9STRA (Fructose-bisphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.020e-26
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   13 HGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDLLPL 222
            +GG+F YPAD KNPNGKLRLLYEGNPI MIVEQAGG A+TGF+ I DV P + HHRIP FFGS +D+  L
Sbjct:  317 YGGIFLYPADNKNPNGKLRLLYEGNPIGMIVEQAGGAASTGFQRILDVPPLNTHHRIPTFFGSPEDVYDL 386          
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: A0A3D0QCJ7_9BACT (Fructose-bisphosphatase (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3D0QCJ7_9BACT)

HSP 1 Score: 102 bits (253), Expect = 2.220e-25
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 RLQIHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDLL 216
            R  ++GG+F YP D KNP GKLRL+YEGNP+A +VEQAGG AT GF+ I D++P S+H R P F GSR+D+L
Sbjct:  122 RTLLYGGIFMYPGDTKNPRGKLRLMYEGNPMAFLVEQAGGHATDGFKRILDIQPASLHERTPLFLGSREDVL 193          
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: A0A0F8CRI8_LARCR (Fructose-bisphosphatase n=12 Tax=Percomorphaceae TaxID=1489872 RepID=A0A0F8CRI8_LARCR)

HSP 1 Score: 104 bits (259), Expect = 3.710e-25
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 RLQIHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDLL 216
            R  ++GG+F YP +VK+P GKLRLLYEGNP+A I+EQAGG+A+TGFE I D++P S+H R P   GSRDD+L
Sbjct:  255 RTLMYGGIFLYPGNVKSPKGKLRLLYEGNPMAYIIEQAGGMASTGFETILDIQPDSIHQRAPVAMGSRDDVL 326          
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: A0A3B5A1H3_9TELE (Fructose-bisphosphatase n=3 Tax=Pomacentridae TaxID=30863 RepID=A0A3B5A1H3_9TELE)

HSP 1 Score: 103 bits (256), Expect = 1.020e-24
Identity = 45/72 (62.50%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 RLQIHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDLL 216
            R  ++GG+F YP +VKNP+GKLRLLYEGNP+A I+EQAGG+A+TG+E I D++PQS+H R P   GS DD+L
Sbjct:  255 RTLMYGGIFLYPGNVKNPDGKLRLLYEGNPMAFIMEQAGGMASTGYENILDIQPQSIHERSPVAMGSPDDVL 326          
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: A0A3Q3FA74_9LABR (Fructose-bisphosphatase n=7 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3FA74_9LABR)

HSP 1 Score: 101 bits (252), Expect = 1.880e-24
Identity = 42/72 (58.33%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 RLQIHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDLL 216
            R  ++GG+F YP +VK+PNGKLRLLYEGNP+A I+EQAGG+A+TG + I D++P+S+H R+P   GS +D+L
Sbjct:  209 RTLMYGGIFLYPGNVKSPNGKLRLLYEGNPMAYIIEQAGGMASTGLQTILDIQPESIHQRVPVAMGSSEDVL 280          
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: H3AP34_LATCH (Fructose-bisphosphatase n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AP34_LATCH)

HSP 1 Score: 102 bits (254), Expect = 1.990e-24
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 RLQIHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDLLPLLD 228
            R  ++GG+F YPA+ K+P GKLRLLYE NP+A IVEQAGG+ATTG EA+ DV+P+S+H R+P   GS DD+   +D
Sbjct:  255 RTLVYGGIFLYPANTKSPKGKLRLLYECNPMAFIVEQAGGMATTGVEAVLDVKPESIHQRVPIALGSPDDVQEYID 330          
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: A0A1D5PN46_CHICK (Fructose-bisphosphatase n=264 Tax=Sauria TaxID=32561 RepID=A0A1D5PN46_CHICK)

HSP 1 Score: 102 bits (253), Expect = 2.860e-24
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 RLQIHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDL 213
            R  ++GG+F YPA+ K+P GKLRLLYEGNP+A I+EQAGG+ATTG EA+ DV+P+ +H R+P   GS DD+
Sbjct:  256 RTLMYGGIFMYPANQKSPKGKLRLLYEGNPMAFIIEQAGGIATTGTEAVLDVKPEGIHQRVPLILGSPDDV 326          
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Match: Q00GK7_KARBR (Fructose-bisphosphatase (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GK7_KARBR)

HSP 1 Score: 98.6 bits (244), Expect = 3.840e-24
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 RLQIHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIRDVRPQSVHHRIPAFFGSRDDL 213
            R  ++GG+F YP D KNPNGKLRLLYEG P++ ++EQAGG +TTG + + D+ P SVH R+P F GS DD+
Sbjct:  108 RTLLYGGLFGYPGDAKNPNGKLRLLYEGGPMSFLLEQAGGKSTTGSQRVMDITPASVHQRVPVFLGSPDDV 178          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7078.15036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTW4_ECTSI3.540e-3991.78Fructose-bisphosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7J4_9PHAE1.630e-3893.15Fructose-bisphosphatase n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CLE5_9STRA1.020e-2671.43Fructose-bisphosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A3D0QCJ7_9BACT2.220e-2561.11Fructose-bisphosphatase (Fragment) n=1 Tax=Bactero... [more]
A0A0F8CRI8_LARCR3.710e-2562.50Fructose-bisphosphatase n=12 Tax=Percomorphaceae T... [more]
A0A3B5A1H3_9TELE1.020e-2462.50Fructose-bisphosphatase n=3 Tax=Pomacentridae TaxI... [more]
A0A3Q3FA74_9LABR1.880e-2458.33Fructose-bisphosphatase n=7 Tax=Percomorphaceae Ta... [more]
H3AP34_LATCH1.990e-2459.21Fructose-bisphosphatase n=1 Tax=Latimeria chalumna... [more]
A0A1D5PN46_CHICK2.860e-2460.56Fructose-bisphosphatase n=264 Tax=Sauria TaxID=325... [more]
Q00GK7_KARBR3.840e-2457.75Fructose-bisphosphatase (Fragment) n=1 Tax=Karenia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7078contigH-paniculata_contig7078:269..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue1.6e-32
Seed eggNOG ortholog2880.D8LTW4
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
Hectar predicted targeting categoryother localisation
EggNOG free text desc.fructose 1,6-bisphosphate 1-phosphatase activity
EggNOG OGsCOG0158@1,KOG1458@2759
EC3.1.3.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.9341986-CDS-H-paniculata_contig7078:268..4961622930854.9341986-CDS-H-paniculata_contig7078:268..496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7078 269..496 +
1691481482.7447991-CDS-H-paniculata_contig7078:268..4961691481482.7447991-CDS-H-paniculata_contig7078:268..496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7078 269..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7078.15036.1prot_H-paniculata_contig7078.15036.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7078 269..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7078.15036.1

>prot_H-paniculata_contig7078.15036.1 ID=prot_H-paniculata_contig7078.15036.1|Name=mRNA_H-paniculata_contig7078.15036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
RLQIHGGVFAYPADVKNPNGKLRLLYEGNPIAMIVEQAGGVATTGFEAIR
DVRPQSVHHRIPAFFGSRDDLLPLLD
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mRNA from alignment at H-paniculata_contig7078:269..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7078.15036.1 ID=mRNA_H-paniculata_contig7078.15036.1|Name=mRNA_H-paniculata_contig7078.15036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig7078:269..496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTTACAGATACACGGAGGCGTTTTCGCGTATCCGGCAGACGTTAAAAA TCCCAACGGTAAGTTGCGACTGCTGTACGAGGGCAATCCTATCGCCATGA TTGTGGAACAGGCGGGAGGCGTCGCCACTACAGGGTTCGAGGCCATTCGG GATGTCAGGCCGCAATCGGTGCATCATCGCATTCCCGCATTCTTCGGTAG CCGAGACGACTTGTTGCCGCTCCTCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig7078:269..496+

>mRNA_H-paniculata_contig7078.15036.1 ID=mRNA_H-paniculata_contig7078.15036.1|Name=mRNA_H-paniculata_contig7078.15036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig7078:269..496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTTACAGATACACGGAGGCGTTTTCGCGTATCCGGCAGACGTTAAAAA
TCCCAACGGTAAGTTGCGACTGCTGTACGAGGGCAATCCTATCGCCATGA
TTGTGGAACAGGCGGGAGGCGTCGCCACTACAGGGTTCGAGGCCATTCGG
GATGTCAGGCCGCAATCGGTGCATCATCGCATTCCCGCATTCTTCGGTAG
CCGAGACGACTTGTTGCCGCTCCTCGACCGGTTACAGATACACGGAGGCG
TTTTCGCGTATCCGGCAGACGTTAAAAATCCCAACGGTAAGTTGCGACTG
CTGTACGAGGGCAATCCTATCGCCATGATTGTGGAACAGGCGGGAGGCGT
CGCCACTACAGGGTTCGAGGCCATTCGGGATGTCAGGCCGCAATCGGTGC
ATCATCGCATTCCCGCATTCTTCGGTAGCCGAGACGACTTGTTGCCGCTC
CTCGAC
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