mRNA_H-paniculata_contig7075.15034.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7075.15034.1
Unique NamemRNA_H-paniculata_contig7075.15034.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: A0A6H5L354_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L354_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 2.710e-99
Identity = 160/254 (62.99%), Postives = 188/254 (74.02%), Query Frame = 1 
Query:  190 IKAIFFADVDR-GVEPELDMSQFNHAIRTVLHGTEDMTDEDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSM---VINIERPGISAYVTCGRDGTIRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSAPARRAVSAMKSAWVKDIQQMPLSNRIAAACLDRTISFYEMLTGEFVCRITGLRSVPTCIECLQ 939
            +K  F AD D  G   ELDM QF+ A+R+VL   ED+TDEDLG+LFMKIDANGSG VDW+EFTGFLLQ          LDEGNRNM AAA MVDLKPLP R Q + +D   A QH+ M   VIN+ERPGISAY+TCGRDG I+FW+K TFAH R+I HLDT+K A E +I    G +G + +G  R   SA   RAV +MKSAWV DIQQMPLSNRIAAAC DRT+SFY++LTGEFVCRI GLRS PTC++C++
Sbjct:    1 MKRFFIADDDTLGAYAELDMKQFSDALRSVLPDIEDLTDEDLGLLFMKIDANGSGDVDWDEFTGFLLQ----------LDEGNRNMAAAAHMVDLKPLP-RNQRAGAD-EHAGQHRDMIEKVINVERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIIT---GGKGREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQMPLSNRIAAACFDRTVSFYDVLTGEFVCRIGGLRSSPTCVDCVE 239
[Close]
BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: D7FNP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP2_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.130e-79
Identity = 141/238 (59.24%), Postives = 169/238 (71.01%), Query Frame = 1 
Query:  109 EIDVVAHRGAHVSLTIHDRLDLDKLQQIKAIFFADVDR-GVEPELDMSQFNHAIRTVLHGTEDMTDEDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSM---VINIERPGISAYVTCGRDGTIRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSAPARRAVSAMKSAWVKDIQQM 810
            +I+V   +GA V L IHD+LDLDKLQ++K  F AD D  G   ELDM QF+ A+R+VL   ED+TDEDLG+LFMKIDANGSG VDW+EFTGFLLQ          LDEGNRNM AAA MVDLKPLP R Q + +D   A QH+ M   VIN+ERPGISAY+TCGRDG I+FW+K TFAH R+I HLDT+K A E +I    G +G + +G  R   SA   RAV +MKSAW+ DIQQ+
Sbjct:   54 DIEVDDRKGADVLLNIHDQLDLDKLQEMKRFFIADDDTSGAYAELDMKQFSDALRSVLPDIEDLTDEDLGLLFMKIDANGSGDVDWDEFTGFLLQ----------LDEGNRNMAAAAHMVDLKPLP-RNQRAGAD-EHAGQHRDMIEKVINVERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIIT---GGKGREVDGNGRRVCSAEVNRAVKSMKSAWIYDIQQV 276
[Close]
BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: A0A1Z9KZB9_9SYNE (Uncharacterized protein n=1 Tax=Synechococcus sp. TMED187 TaxID=1986595 RepID=A0A1Z9KZB9_9SYNE)

HSP 1 Score: 96.3 bits (238), Expect = 8.950e-19
Identity = 79/248 (31.85%), Postives = 112/248 (45.16%), Query Frame = 1 
Query:  151 TIHDRLDLDKLQQIKAIFF-ADVDRGVEPELDMSQFNHAIRTVLHGTEDMTDEDLGVLFMKIDANGSGSVDWEEFTGFLL----QARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSMVINIERPGISAY----VTCGRDGTIRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSAPARRAVSAMKSAWVKDIQQMPLSNRIAAACLDRTISFYE 867
            ++ DR++L +L ++KA F  AD D+G    LDM +F  A   VL   E++T   L  LFMKIDAN  GSVDW+EFT F+L     A D S   F +    R M    ++ D  P              +  H+ M+  I   G        VT  RDGT+R W+ ST AH++      TIKV+                                   +S+W+ D +    SNR+A AC+DR++  Y+
Sbjct:    6 SMEDRINLHQLMELKAAFERADTDQG--GSLDMEEFLEAFGGVLG--ENLTTTQLIHLFMKIDANSDGSVDWDEFTQFMLLENQAAADMSDRSFAV----RYMEQDPRLCDPNPK-------------SVHHRDMIEQILLIGKGTQQEKLVTSARDGTVRVWNASTLAHVK------TIKVS-----------------------------------ESSWITDCKYFGASNRLAVACVDRSVYLYD 191
[Close]
BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: A0A835XV31_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XV31_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 9.560e-17
Identity = 76/263 (28.90%), Postives = 118/263 (44.87%), Query Frame = 1 
Query:  160 DRLDLDKLQQIKAIF-FADVDRGVEPELDMSQFNHAIRTVLHGTEDMTD-EDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSMVINIERP----GISAYVTCGRDGTIRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSAPARRAVSAMKSAWVKDIQQMPLSNRIAAACLDRTISFYEMLTGEFVCRITGLRSVPTCIE 930
            D ++ D L+++KA F  AD+D      L   +F +A   +L  TED  D E L  LFM+IDAN  G+VDW+EF+ ++L      +SQ          T   Q  +  P+PD              HK  + +I       G+  Y TCGRDGT+R W+     H++++ HL   +           G  G +    AR   +A + R        W      MPL+ ++A     R+I  Y++ + E   +I  +  VP C++
Sbjct:   67 DAVNQDILRRVKAKFDSADMDGS--GRLHPQEFINAFLGILQ-TEDGGDAEALAKLFMRIDANSDGTVDWDEFSTYMLL-----ESQGSAKVREFESTVTMQQAEPSPVPD-----------LLAHKDAMTHIASMRLANGVDRYATCGRDGTVRLWNAKDLKHVKTL-HLPRPRAG-------GHGHEGSERLLSAREGGAAGSSRPSHGNGGLWATCSAFMPLTQKLAVGSFSRSIRIYDLASYEVAGQIPEIDYVPLCLD 302
[Close]
BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: A0A150H3I0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3I0_GONPE)

HSP 1 Score: 91.3 bits (225), Expect = 1.200e-16
Identity = 77/254 (30.31%), Postives = 117/254 (46.06%), Query Frame = 1 
Query:  175 DKLQQIKAIF-FADVDRGVEPELDMSQFNHAIRTVLHGTEDMTD-EDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSMVINIERPGISAYVTCGRDGTIRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSAPARRAVSAMKSAWVKDIQQMPLSNRIAAACLDRTISFYEMLTGEFVCRITGLRSVPTCIE 930
            D L+++KA F  AD+D     +L   +F  A   +L  TED  D E L  LFM+IDAN  G++DW+EF+ ++L     SQ    + E    +T    M   +P P     +  D  T      +   ++R     Y TCGRDGT+R W+     H++++ HL   +        AS  S G D  G AR        R V+     W      MPL+ ++A     R+I  Y++ + E   +I  +  VP C++
Sbjct:    4 DILRRVKAKFDSADLDG--TGQLHPQEFIKAFLGILQ-TEDGGDAEALAKLFMRIDANSDGTIDWDEFSTYMLL---ESQGSARVREFESTVT----MQQAEPSPVSDLLAHKDAMTHITAMRLANGVDR-----YATCGRDGTVRLWNAKDLKHIKTL-HLPRPRAP------ASSRSDGTDRIGSAR-------GRQVAQHGGLWATCSAFMPLTQKLAVGSFSRSIRIYDLASYELAGQIPEIDYVPLCLD 228
[Close]
BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: A0A7S3U322_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3U322_EMIHU)

HSP 1 Score: 90.1 bits (222), Expect = 2.740e-16
Identity = 63/165 (38.18%), Postives = 90/165 (54.55%), Query Frame = 1 
Query:  160 DRLDLDKLQQIKAIFF-ADVDRGVEPELDMSQFNHAIRTVLHGTEDMTDEDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSMV--INIERPGISAYVTCGRDGTIRFWHKSTFAHLRSI 645
            D ++L +L +++A F  ADVD G    LD+ +F  A  +VL    +MT E L +LFMKIDAN  GSVDW+EF  F+L   ++  +    D G+ +   A       PLP   QG  SD +    H  MV  + +   G+   V+  RDGT+R WH  + AHLR++
Sbjct:   11 DAMNLHQLVELRAAFEQADVDGG--GSLDVEEFIEAFGSVLG--RNMTREKLALLFMKIDANSDGSVDWDEFINFVLL--ENKAAANAPDAGSSSFRFAL------PLP---QGGNSDRSERHAHSGMVERLLVLPRGLDKCVSGSRDGTVRVWHTGSLAHLRTV 160
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BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: A0A8J4AQF2_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AQF2_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 9.830e-16
Identity = 78/262 (29.77%), Postives = 123/262 (46.95%), Query Frame = 1 
Query:  160 DRLDLDKLQQIKAIFFADVDRGVEPELDMSQFNHAIRTVLHGTEDMTD-EDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSMVINIE----RPGISAYVTCGRDGTIRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSAPARRAVSAMKSAWVKDIQQMPLSNRIAAACLDRTISFYEMLTGEFVCRITGLRSVPTCIE 930
            D ++ D L+++KA F +  D     +L   +F  A   +L  TED  D E L  LFM+IDA+  G++DW+EF+ ++L     SQ    + E    +T    M D  P         S  +    HK  + +I       G+  Y TCGRDGT+R W+     H++++ HL   ++A    + A EG         A   SSA A R + +    W      MPL+ ++A     R+I  Y++ + E V +I  +  VP C++
Sbjct:   76 DAINQDILRRVKAKFDS-ADTDGTGQLHPQEFIRAFLGILQ-TEDGGDAEALAKLFMRIDADSDGTIDWDEFSTYMLL---ESQGSARVREFESTVT----MQDPTP---------SLVSDLLAHKDAITHITGMRLANGVDRYATCGRDGTVRLWNAKDLKHVKTL-HLPRPRIA----LPAREG---------AERLSSARASRPMHS-GGLWATCSAFMPLTQKLAVGSFSRSIRIYDLASYEIVGQIPEIDYVPLCLD 304
[Close]
BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: A0A2K3DIJ7_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DIJ7_CHLRE)

HSP 1 Score: 87.8 bits (216), Expect = 1.790e-15
Identity = 77/259 (29.73%), Postives = 120/259 (46.33%), Query Frame = 1 
Query:  160 DRLDLDKLQQIKAIF-FADVDRGVEPELDMSQFNHAIRTVLHGTEDMTD-EDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSMVINIERPGISAYVTCGRDGTIRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSAPARRAVSAMKSAWVKDIQQMPLSNRIAAACLDRTISFYEMLTGEFVCRITGLRSVPTCIE 930
            D ++ D L+++KA F  AD+D     +L   +F +A   +L  TED  D E L  LFM+IDAN  G+VDW+EF+ ++L      +SQ          T   Q  D+  + D   G R   T  A  +  + N    G+  Y TCGRDGT+R W+     H+++I+           L  +    +  D  GG+    SA +RR        W      MPL+ ++A     R+I  Y++ + E   +I  +  VP  ++
Sbjct:   65 DAVNQDILRRVKAKFDSADLDGS--GQLQPQEFINAFLGILQ-TEDGGDAEALAKLFMRIDANSDGTVDWDEFSTYMLL-----ESQGSARVREFESTVTMQQPDMSTMSDHA-GHRDAMTHIASMR--LAN----GVDRYATCGRDGTVRLWNAKDLKHVKTIA-----------LPPSRPSGQDRDGGGGSERLMSA-SRRQPKGHSGLWATCSAFMPLTQKLAVGSFSRSIRIYDLSSYELSGQIPQIDYVPLSLD 296
[Close]
BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: A8I637_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8I637_CHLRE)

HSP 1 Score: 86.3 bits (212), Expect = 6.140e-15
Identity = 76/256 (29.69%), Postives = 118/256 (46.09%), Query Frame = 1 
Query:  169 DLDKLQQIKAIF-FADVDRGVEPELDMSQFNHAIRTVLHGTEDMTD-EDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSMVINIERPGISAYVTCGRDGTIRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSAPARRAVSAMKSAWVKDIQQMPLSNRIAAACLDRTISFYEMLTGEFVCRITGLRSVPTCIE 930
            + D L+++KA F  AD+D     +L   +F +A   +L  TED  D E L  LFM+IDAN  G+VDW+EF+ ++L      +SQ          T   Q  D+  + D   G R   T  A  +  + N    G+  Y TCGRDGT+R W+     H+++I+           L  +    +  D  GG+    SA +RR        W      MPL+ ++A     R+I  Y++ + E   +I  +  VP  ++
Sbjct:  934 EADILRRVKAKFDSADLDGS--GQLQPQEFINAFLGILQ-TEDGGDAEALAKLFMRIDANSDGTVDWDEFSTYMLL-----ESQGSARVREFESTVTMQQPDMSTMSDHA-GHRDAMTHIASMR--LAN----GVDRYATCGRDGTVRLWNAKDLKHVKTIA-----------LPPSRPSGQDRDGGGGSERLMSA-SRRQPKGHSGLWATCSAFMPLTQKLAVGSFSRSIRIYDLSSYELSGQIPQIDYVPLSLD 1162
[Close]
BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Match: A0A835TDA1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TDA1_CHLIN)

HSP 1 Score: 85.5 bits (210), Expect = 1.130e-14
Identity = 78/259 (30.12%), Postives = 119/259 (45.95%), Query Frame = 1 
Query:  160 DRLDLDKLQQIKAIF-FADVDRGVEPELDMSQFNHAIRTVLHGTEDMTD-EDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTAAAQMVDLKPLPDRGQGSRSDGTTAAQHKSMVINIERPGISAYVTCGRDGTIRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSAPARRAVSAMKSAWVKDIQQMPLSNRIAAACLDRTISFYEMLTGEFVCRITGLRSVPTCIE 930
            D ++ D L+++KA F  AD+D     +L   +F +A   +L  TED  D E L  LFM+IDAN  G+VDW+EF+ ++L      +SQ          T   Q  D+  L D   G R   T  A  +  + N    G+  Y TCGRDGT+R W+     H+++I+           L  +       D  GG+    SA +RR        W      MPL+ ++A     R+I  Y++ + E   +I  +  VP  ++
Sbjct:   72 DAVNQDILRRVKAKFDSADMDGS--GQLQPQEFINAFLGILQ-TEDGGDAEALAKLFMRIDANSDGTVDWDEFSTYMLL-----ESQGSARVREFESTVTMQQPDMSLLGDH-VGHRDAMTHIAAMR--LAN----GVDRYATCGRDGTVRLWNSKDLKHVKTIA-----------LPPSRPAGPDRDGGGGSERLMSA-SRRQPKGHGGLWATCSAFMPLTQKLAVGSFSRSIRIYDLASYELSGQIPQIDYVPLSVD 303
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7075.15034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L354_9PHAE2.710e-9962.99EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FNP2_ECTSI1.130e-7959.24EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A1Z9KZB9_9SYNE8.950e-1931.85Uncharacterized protein n=1 Tax=Synechococcus sp. ... [more]
A0A835XV31_9CHLO9.560e-1728.90Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A150H3I0_GONPE1.200e-1630.31Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7S3U322_EMIHU2.740e-1638.18Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A8J4AQF2_9CHLO9.830e-1629.77Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A2K3DIJ7_CHLRE1.790e-1529.73Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A8I637_CHLRE6.140e-1529.69Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A835TDA1_CHLIN1.130e-1430.12Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7075contigH-paniculata_contig7075:5245..11538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.4
Seed ortholog evalue3.3e-15
Seed eggNOG ortholog3055.EDP07222
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD repeat-containing protein
EggNOG OGs34KY0@3041,3805Z@33090,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons7
Model size939
Cds size939
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.5882773-CDS-H-paniculata_contig7075:5244..54331622930854.5882773-CDS-H-paniculata_contig7075:5244..5433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 5245..5433 +
1691481482.5885918-CDS-H-paniculata_contig7075:5244..54331691481482.5885918-CDS-H-paniculata_contig7075:5244..5433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 5245..5433 +
1622930854.6022053-CDS-H-paniculata_contig7075:5915..59871622930854.6022053-CDS-H-paniculata_contig7075:5915..5987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 5916..5987 +
1691481482.6016645-CDS-H-paniculata_contig7075:5915..59871691481482.6016645-CDS-H-paniculata_contig7075:5915..5987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 5916..5987 +
1622930854.6211643-CDS-H-paniculata_contig7075:7064..72231622930854.6211643-CDS-H-paniculata_contig7075:7064..7223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 7065..7223 +
1691481482.6108055-CDS-H-paniculata_contig7075:7064..72231691481482.6108055-CDS-H-paniculata_contig7075:7064..7223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 7065..7223 +
1622930854.6399145-CDS-H-paniculata_contig7075:8256..83761622930854.6399145-CDS-H-paniculata_contig7075:8256..8376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 8257..8376 +
1691481482.6196868-CDS-H-paniculata_contig7075:8256..83761691481482.6196868-CDS-H-paniculata_contig7075:8256..8376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 8257..8376 +
1622930854.656663-CDS-H-paniculata_contig7075:9488..96471622930854.656663-CDS-H-paniculata_contig7075:9488..9647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 9489..9647 +
1691481482.6364505-CDS-H-paniculata_contig7075:9488..96471691481482.6364505-CDS-H-paniculata_contig7075:9488..9647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 9489..9647 +
1622930854.6757374-CDS-H-paniculata_contig7075:10181..102891622930854.6757374-CDS-H-paniculata_contig7075:10181..10289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 10182..10289 +
1691481482.6475885-CDS-H-paniculata_contig7075:10181..102891691481482.6475885-CDS-H-paniculata_contig7075:10181..10289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 10182..10289 +
1622930854.6916945-CDS-H-paniculata_contig7075:11406..115381622930854.6916945-CDS-H-paniculata_contig7075:11406..11538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 11407..11538 +
1691481482.6564534-CDS-H-paniculata_contig7075:11406..115381691481482.6564534-CDS-H-paniculata_contig7075:11406..11538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7075 11407..11538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7075.15034.1prot_H-paniculata_contig7075.15034.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7075 5245..11538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7075.15034.1

>prot_H-paniculata_contig7075.15034.1 ID=prot_H-paniculata_contig7075.15034.1|Name=mRNA_H-paniculata_contig7075.15034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
SEEDTGAESVLEGTWNVPSSSSDSEHTEGDIAIDKAEIDVVAHRGAHVSL
TIHDRLDLDKLQQIKAIFFADVDRGVEPELDMSQFNHAIRTVLHGTEDMT
DEDLGVLFMKIDANGSGSVDWEEFTGFLLQARDHSQSQFILDEGNRNMTA
AAQMVDLKPLPDRGQGSRSDGTTAAQHKSMVINIERPGISAYVTCGRDGT
IRFWHKSTFAHLRSISHLDTIKVACETLIKASEGSRGWDAEGGARCTSSA
PARRAVSAMKSAWVKDIQQMPLSNRIAAACLDRTISFYEMLTGEFVCRIT
GLRSVPTCIECLQ
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mRNA from alignment at H-paniculata_contig7075:5245..11538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7075.15034.1 ID=mRNA_H-paniculata_contig7075.15034.1|Name=mRNA_H-paniculata_contig7075.15034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6294bp|location=Sequence derived from alignment at H-paniculata_contig7075:5245..11538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGAAGAAGATACAGGGGCGGAGAGCGTGCTGGAAGGTACATGGAACGT
TCCGTCCTCCTCGAGCGACTCGGAGCACACTGAGGGAGACATAGCAATCG
ACAAAGCTGAGATTGATGTTGTTGCTCATAGGGGAGCTCATGTTTCGCTC
ACCATTCACGACCGACTTGATCTGGACAAGCTTCAGCAGGTGCCTTTACC
TCTTCTTGCTAGCCCTCAGAAAGCAGAGAGAATATACCCAGTATAAGTTC
ATGTCTTGCAAGTACAGCACAACAGTATACAACAGTATCAGGTTAGCGTG
AACCGAGCCAGGTGACTTGTCAAGGAAATGGATGAACAGTGAAGTTTCTC
GATGCCTTGCGCTGCAGTATTTGTCAGCGCTAGTTTCGATTGCACATAGC
AGCGGTGTTCTCCCTTGTATATTTGCGTATGTACGTCTCTCGTTGCGCTC
TGCCCAGGATCCAAGACGAAGCATCCATACTCGCGAATACAAGGGCAGGC
AGGCTGTCCTCGATCACAACCGTCGCCCATTGTTCAAAAGCAAGTGATTT
TTGCTCTGTGTTTCAGCATGGCCTCATCCACCCCCAACCCGTCTATGGCT
GCTGCCCTCATGCGTGACGCCAGTGCCTCCTTCTCTTCACTTGCATCTCT
TCTTTGTTACATTATATTTAGATCAAAGCCATTTTCTTCGCTGATGTGGA
TCGGGGTGTCGAGCCTGAGCTTGACATGAGCCAATTCAACCATGTGAGTT
GGAGTCTCGCATGCTCTACGAGTGCTACTTACTGGCTGTACGTTTTGTAT
TTTCTCCTCCATTATGTTTGGCCGGAGCCGAGGGTGACGTCGAGCGTAAG
TTTTCACGAGACTTGCTCACAATGTAATCGTACCCACAGTTATTGCTGCT
CAAAGTTACCCGAGAGGAGTGTAGGGGGGTGGTCCTCCAAATTGGAGTAG
AAATATTTTGCGGTCTTGCTTGCTATAGATAGAGTCCAGGTATGCAGCCT
TGAGATTTTACGGATATGGGGGGATAATCGCGTGAGGGTTGCATTGCGTC
CCTCTTCCCACAGCATTCGTGCCGCCGTTGTTTACAATATGAAATTGATA
TCTGCTCCGAAATGTTGGTGTTGTGAGAGGCGTATAAAATATTGAGTGTT
CATGATGATTATTTGAAAGTATCGGGACCATTCCAATCTAGTGCTATACT
GCATTATGCGATAGGGGTGAAGCTAGAAAAAAATGCTTGATTGTCACGAA
TCACGCTTTCGCATGTCTGAGGAATTTTGACTTTTCTATAGCTCTCCAAG
GGCGCCACCTACCTCGGTATTACTATATTGAGACAAAGATTTTTCATTTG
TTACAATTTTATAGAGTATGTATACCACCCATTTTTGCACATTTCGGATT
TTCACAAAAATGGATAGAAAAGAGATCGATTAATATCTAGCGATACGATA
GGTCGAAAAATTGTCGCAGATGTCAGCCATCTACAAATAATGAGGAACTG
GGATTTTGGAGTTTTACAGCTAAATACTTTCGTTCTGGATGTTTTGGCCC
ATTTCAGGGGCGGAAAATATATTCTACACTTCATTTTTTTCCTCATCTCC
GAGTGAGAGATGAGAGGGGCCGTTAGCCCCAAAGGAAATATCCGCATTTT
TGTTCTTGTCCATGCGCTCGCTCTTCGAGGAAAAGCGAAGGGGAACGAAA
AATCGATGGCATATCGGATGGGGGGAATCTGTGCACATGTGTGAGTTTGT
TTGACAGCTAGAGGTTTTTTCTCTCCGGACACGCCCCGCGTACCGTCGCT
GCGGTTCATGGCGCTTTCAGGCAATTCGGACTGTGCTACATGGTACGGAG
GACATGACGGATGAAGATCTGGGAGTACTGTTCATGAAAATTGATGCAAA
TGGCAGCGGGTCGGTTGACTGGGAAGAGTTCACTGGCTTTCTGCTCCAGG
CGAGAGACCACAGTCAATCCCAGTTCATTGTAGGAGGTAGGGGTCAGGAT
CAGAGTTAACGTAAGGCACCGACATTTCCCTGTCATTCTGCTTGTTTCCG
GGTACAGCGCACCGAACTATAAACAAATGGACTGACAACAGTTTACGTTA
CATTCGGCAAGTGATTCGGGGGCTTCCGAGATCATGAAAAGGATGCAGAC
ATTTGCCGGAATTTCCATTGATTTTATCCTGTTTGTCAAAATGAGAGTAG
AAATGACATGCTGGATATCCGTGACCGTACACCCACTGTTGTTCGCGCTG
TATGGTAGTTTCGGTGTTTCGTTTGTTGCTTTGTGTGCAGTTTTCTCGTT
AGTTCAAATGATGTCATTTCGTACTTTCATTAAATAGTGTTTCCGTCTCC
TTCCTCTGTGCTGTGCAAGCGTGCCATGCGGTGTGCACCTGTTGAGCATA
TCTTCTTCCCAAGCAACCACGTTGTAAAACATCAGTGTATCGAGCACGGC
TTCATTGACCTTCCATGAACTAGATCCCTCCATCTCACTCGACTACAAGG
ACGTGCATCTCGCCGTCGTTGTCGAGTCACTGCATCTGAAAACGGAGATG
CGTACTGGAATACTGAGTGACTCTCACCAAGTAAATAGCGGTCAGTGCCC
TGTTCTCGTCCAAGCAACGGAAACGACTGCAAAGCTTTCGAAACAAAGGT
AAAAAGTGAAACGTTTCACCCCCCAGACAAATTCGAATACTTGCAAATGG
TTTTCACAGAAAAGTGGAAGTTTTTGTCTGGTAATTCAGCATGAGCTCGT
CTACTCTTATGTGCCTCGGACCATCTGCGGTTGCTAATGATACTCGTAAT
TCGAACGAACAGGGGCGGGCTCATTCTGAAACTCAATCGAATACTTCCAG
TTTTTTGTGAAAACCATTTGCAAGTTATTCGTATTTTGTCCAGAGGAGTG
AACATCTGTGCCTTGTCCTCGGCCTGGTTGGTTGCACATACAACACTCTA
ACATGACTGCGATGTAATAAATATGTATTTTTTCGCGCTCCATCGATCGA
TAAAAACCTCAGCTGGATGAGGGCAACCGTAACATGACCGCGGCGGCACA
GATGGTGGATCTCAAGCCGCTTCCTGATCGCGGTCAAGGTTCACGATCGG
ACGGTACCACTGCCGCGCAGCACAAAAGCATGGTCGAAAAGGCAAGAAAA
ATCTCTGACAAGAAAAAGGCATTTTTGTCTGTTGGAAATAGATATCGACA
GGACGAATACAAGGGACAGCGTAAACGTTCCGCCCCCTGAGATACAACTA
GCACCCTGCGTGGAATTCGCCAGCTTTACCTCTCACCCACACCTGGCATG
TTGAGCACGTGCACCGTACGCCCTTGCAAAGGTGTTATTTATATTAGTTG
TTTACCAACGCACCGGCGTGTGTTGCTGATATTCGTGTAGCTGTGTGGAA
CAATAGCTTCCGGTTCGTATTTCCTATGGCAAAACCCAAGCGACTGCTTC
GTGCATTCATTGCACTGCTGCAGCTGCCATGCGCTGAGCCAGCCTTGTCC
ACCGCAAGATATTTGGGGCGTAAAAGTGCAGCTTTCATCCGAGCCCTGTG
TACGCCGACTTTCTCCGTTGTTTCGCCTCGCCATGCGCCAAAAATGCCAC
ACACAAAAAAAAAAACCACATGTTGGTGCGTCGCGCTAAATACGAGCATG
ACACTATACACGAATTCACATGAATATGTCGCACATATGTTGGGGGAGTC
GATGTACAGCATTAAACGCAACCAACCCCAAGGACGAGGAAGCGTGCTGA
TATATTGTACACACGACATACGGGACCCACAAATCCCAGTGGAGAATTTT
AAGGCGAGAACTGTCTTCGATTTACGTCATATCGCTGCCGTTTTGCGGTC
GCTAGTATGCCGTTGAAAGGTCCGTGTCTGCGATTGCTTTGTGATGTACT
GTCAATATATTCGTTATTGGCTCACGTTTGCCACCCGAACTGCCTAGCCG
CGTGGCGAGTGGGTCAACAGCCCTAGACTGCTAGCTATACATACCGCTGT
ATTCGCATGATACACGGCGATTTTCACACGCTTTTGCTCGACGTCTTCTA
TTACGCTCGTCCCGCTGTGAAGATTTTGCGGTGTACTGTGAAGGCCAAAA
ACAGCCAAAAAGCCCCCGCGCGTTTGTAAGTCCCCTTCGTTCCCGACCTG
CTCGGACCTCCAGAAGGGAATAGGGATTAGCAGTATCTCCCCCCCCCCCC
CCTCCTCGTTTTGCATTTTGTTCTATCTGTCTGCACCGGGCCAGGTAATC
AACATCGAACGACCAGGCATTAGCGCGTACGTAACGTGCGGAAGGGACGG
GACTATTCGGTTCTGGCACAAGAGCACTTTCGCACATCTTCGGAGCATCA
GCCATCTCGACACCATCAAGGTTGCGTGTGAAACGTTGATAAAGGCGAGC
GAGGTTATTTCTTCTACGTAACCCTATGGTGAACCACCGGCTCTCCGGCG
CGTACAGTAAAAATCCAGACCTAGCTGGATGCTTTGTGGTTGCTCAGGCT
TATGTATATCACCCGCAGGTAAACACAGACGAGGAGATAAACGAATTTTC
TTGAAATGTCATACTCCGGAGTATATAAGTACGCGTGCAATGTGTACGCG
TTTGACGTGTATCTGGCTTCGAGGTCGCCATGTGTTTTTGTGGACCAGTC
ATCAGCCAGACTTTCGCTATTGCCACAATGAGCAGCTACGGGAGGTCTTG
CACGCAAACTGCCGTCGTCGAGCTTCTGTCACCGTTCTCACGCAACTCGC
TGCACAAAATAAGCAAACGCCTGTTCACCATGCTGCGACACACACTACTG
AGAAATCGATCTTGTTGTTCACCTTTTGCACCAGCAAAAACGAAGACGCT
ATTTCACCAAGTGATGAATCGAAGTCTACGTTCAAGCCCAGCTATACCGT
TTCCCTCTCTCTTTCTTGTACGATTCGCTGTTGGCAGGGATCCAGGGGAT
GGGATGCTGAGGGGGGCGCACGCTGCACGTCATCTGCGCCCGCAAGGAGA
GCAGTAAGCGCCATGAAGAGCGCTTGGGTGAAGGACATACAGCAGGTGCG
CAACATGGCATGCAGCAAAAAGGTCCGGGGATGGGGTGGGGGAGGGGGAG
GGTTTCCAACGTTCATATTCGATATATTAACTGCATTATAGTGCAGCTGG
CTTTGAAATTCAGAATTGTGCATTTATCAGCAATTTCACATCTTTATGGG
GAGCTTGGCCTAATAATCAACATTTTCAGGGCTTGTAACGTAAGTACAGG
AAGTTCACAAGAAGCGGCAGGATGAGAACCGTTGCGTCGGTCTCTGCGAG
GATGGCAACCCGTCCCGTCGATTTTGTTTCCATTCGCTCTTTCCATCCCG
TCGCATCTCGTCTCCGTACGCTTGTGACGAGCCCTGACTATTTGTTATTT
TCCAGGGGATACAACTGATGTTACCATCGCCTCTCTTTCTATCTGCATAT
GACAATAGGTACTTATTTGTGCTCCTGCAAAAGTCGGAGATATCGAGATG
CGAAAATATCATGAGATTTTGAAAAAACGAACTAGAATCGGATTACTCGA
ATCGGATCTTTTCTCACTGCCTGACATTTCAATTCGCGTCACACAGCTAA
CTCTTAGTTTCGTAGCGTGCGATTGACTGCCTAGTTACATTTATTCCAAA
GCTACGCAGTTGACAGTCCAGCTGTTTGGAAGTGAAAACTGGGAATGACC
ATACACGTATGCGTAGCGTCTCCACATAATCCCCAACCTGCGTGGTGGCT
TTTCTTCCGCTATTTATTTATTTTCCTTCTCACGCATGAGAAAGAACGAC
GGTAACCAATGATCTTGCTACCCCAAGCACTGCGGTTGGAAGACTGCATG
TTGACTCCCCCTTCGCGCGTTATGTTCAAAGGTCGAACAACTTCGACACG
CAGAACATGAGTATAACTACCCCTCCCCCCCCCCCCCCCCCCCCCGCCCT
GACGCTGAGAACCCTGCATAGTCTTTCTGTCCTGGTACCCTGTATAAGTG
CAAAGTCATATGTTATTAGGAGTCCCCACCCCTTCCTCCCTGCCTCCCTG
CCTCCCTGCCTCTCTCCCCCGTCGATATGTATTTTTTCCTGCGACCCATT
TTGTAACGGTTTCTCGTTCACCGTTGTATTGCAATCGCAACGCGCCAACA
ACCAACAAATAGATGCCTCTCAGCAACCGCATCGCGGCGGCGTGCCTGGA
TCGCACGATAAGCTTCTACGAGATGCTGACGGGCGAGTTCGTGTGCCGGA
TCACGGGGCTACGCTCCGTCCCCACCTGCATCGAATGTCTTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7075:5245..11538+

>mRNA_H-paniculata_contig7075.15034.1 ID=mRNA_H-paniculata_contig7075.15034.1|Name=mRNA_H-paniculata_contig7075.15034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig7075:5245..11538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGAAGAAGATACAGGGGCGGAGAGCGTGCTGGAAGGTACATGGAACGT
TCCGTCCTCCTCGAGCGACTCGGAGCACACTGAGGGAGACATAGCAATCG
ACAAAGCTGAGATTGATGTTGTTGCTCATAGGGGAGCTCATGTTTCGCTC
ACCATTCACGACCGACTTGATCTGGACAAGCTTCAGCAGTCTGAAGAAGA
TACAGGGGCGGAGAGCGTGCTGGAAGGTACATGGAACGTTCCGTCCTCCT
CGAGCGACTCGGAGCACACTGAGGGAGACATAGCAATCGACAAAGCTGAG
ATTGATGTTGTTGCTCATAGGGGAGCTCATGTTTCGCTCACCATTCACGA
CCGACTTGATCTGGACAAGCTTCAGCAGATCAAAGCCATTTTCTTCGCTG
ATGTGGATCGGGGTGTCGAGCCTGAGCTTGACATGAGCCAATTCAACCAT
ATCAAAGCCATTTTCTTCGCTGATGTGGATCGGGGTGTCGAGCCTGAGCT
TGACATGAGCCAATTCAACCATGCAATTCGGACTGTGCTACATGGTACGG
AGGACATGACGGATGAAGATCTGGGAGTACTGTTCATGAAAATTGATGCA
AATGGCAGCGGGTCGGTTGACTGGGAAGAGTTCACTGGCTTTCTGCTCCA
GGCGAGAGACCACAGTCAATCCCAGTTCATTGCAATTCGGACTGTGCTAC
ATGGTACGGAGGACATGACGGATGAAGATCTGGGAGTACTGTTCATGAAA
ATTGATGCAAATGGCAGCGGGTCGGTTGACTGGGAAGAGTTCACTGGCTT
TCTGCTCCAGGCGAGAGACCACAGTCAATCCCAGTTCATTCTGGATGAGG
GCAACCGTAACATGACCGCGGCGGCACAGATGGTGGATCTCAAGCCGCTT
CCTGATCGCGGTCAAGGTTCACGATCGGACGGTACCACTGCCGCGCAGCA
CAAAAGCATGCTGGATGAGGGCAACCGTAACATGACCGCGGCGGCACAGA
TGGTGGATCTCAAGCCGCTTCCTGATCGCGGTCAAGGTTCACGATCGGAC
GGTACCACTGCCGCGCAGCACAAAAGCATGGTAATCAACATCGAACGACC
AGGCATTAGCGCGTACGTAACGTGCGGAAGGGACGGGACTATTCGGTTCT
GGCACAAGAGCACTTTCGCACATCTTCGGAGCATCAGCCATCTCGACACC
ATCAAGGTTGCGTGTGAAACGTTGATAAAGGCGAGCGAGGTAATCAACAT
CGAACGACCAGGCATTAGCGCGTACGTAACGTGCGGAAGGGACGGGACTA
TTCGGTTCTGGCACAAGAGCACTTTCGCACATCTTCGGAGCATCAGCCAT
CTCGACACCATCAAGGTTGCGTGTGAAACGTTGATAAAGGCGAGCGAGGG
ATCCAGGGGATGGGATGCTGAGGGGGGCGCACGCTGCACGTCATCTGCGC
CCGCAAGGAGAGCAGTAAGCGCCATGAAGAGCGCTTGGGTGAAGGACATA
CAGCAGGGATCCAGGGGATGGGATGCTGAGGGGGGCGCACGCTGCACGTC
ATCTGCGCCCGCAAGGAGAGCAGTAAGCGCCATGAAGAGCGCTTGGGTGA
AGGACATACAGCAGATGCCTCTCAGCAACCGCATCGCGGCGGCGTGCCTG
GATCGCACGATAAGCTTCTACGAGATGCTGACGGGCGAGTTCGTGTGCCG
GATCACGGGGCTACGCTCCGTCCCCACCTGCATCGAATGTCTTCAGATGC
CTCTCAGCAACCGCATCGCGGCGGCGTGCCTGGATCGCACGATAAGCTTC
TACGAGATGCTGACGGGCGAGTTCGTGTGCCGGATCACGGGGCTACGCTC
CGTCCCCACCTGCATCGAATGTCTTCAG
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