mRNA_H-paniculata_contig7071.15032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7071.15032.1
Unique NamemRNA_H-paniculata_contig7071.15032.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7071.15032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7071contigH-paniculata_contig7071:8214..8820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size607
Cds size351
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.3937485-UTR-H-paniculata_contig7071:8213..84691622930854.3937485-UTR-H-paniculata_contig7071:8213..8469Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7071 8214..8469 +
1691481482.4966407-UTR-H-paniculata_contig7071:8213..84691691481482.4966407-UTR-H-paniculata_contig7071:8213..8469Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7071 8214..8469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.410957-CDS-H-paniculata_contig7071:8469..88201622930854.410957-CDS-H-paniculata_contig7071:8469..8820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7071 8470..8820 +
1691481482.508453-CDS-H-paniculata_contig7071:8469..88201691481482.508453-CDS-H-paniculata_contig7071:8469..8820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7071 8470..8820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7071.15032.1prot_H-paniculata_contig7071.15032.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7071 8470..8820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7071.15032.1

>prot_H-paniculata_contig7071.15032.1 ID=prot_H-paniculata_contig7071.15032.1|Name=mRNA_H-paniculata_contig7071.15032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MAKGIAHATEIDERVTQRRAYPQRGSLSRVFLTSSPPIIHCVSPFLPSSL
PLTRIRGKGGLAVPPFFKISSRCFGGLFPDRVLISIGAVFTMPMNLAQYL
EEGETHVLSYTECRKN*
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mRNA from alignment at H-paniculata_contig7071:8214..8820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7071.15032.1 ID=mRNA_H-paniculata_contig7071.15032.1|Name=mRNA_H-paniculata_contig7071.15032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=607bp|location=Sequence derived from alignment at H-paniculata_contig7071:8214..8820+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCGAGCACGTATGGGGTTTCGTATACCCCTCCCTATTTTACATGGA
CGATAATCCCATGATCTCCATGTATGGCAAGGGTGTAAGCTGTAGTAGGA
TAGCACTCTACACTTTTTTTCTTTCGTTTTTTTTCCCCTCGTTTTTGCAC
TTTATTCACACCTGCCTGGCCGGACGACCTACCCGTCTCTTTCCTCCCTT
GCCTTCGAAGCCATGCCTTGGATATATGACAAGCTGGTTTATTTTCTGGC
AACCGGATGGCTAAAGGTATAGCACACGCGACGGAGATAGATGAGCGAGT
GACCCAAAGGCGTGCATACCCGCAACGCGGCAGTCTTTCAAGGGTGTTTT
TAACATCCTCTCCCCCTATAATACATTGTGTTTCGCCATTCCTCCCCTCC
TCTCTGCCATTGACTCGTATAAGAGGCAAAGGCGGTTTAGCTGTGCCTCC
GTTTTTCAAGATCTCGTCGAGGTGTTTCGGGGGTTTATTTCCTGACCGTG
TGTTGATTTCAATTGGCGCGGTTTTTACGATGCCGATGAATCTAGCACAG
TACCTGGAGGAGGGGGAGACGCATGTCCTGTCATACACGGAATGTAGGAA
AAATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig7071:8214..8820+

>mRNA_H-paniculata_contig7071.15032.1 ID=mRNA_H-paniculata_contig7071.15032.1|Name=mRNA_H-paniculata_contig7071.15032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig7071:8214..8820+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAAAGGTATAGCACACGCGACGGAGATAGATGAGCGAGTGACCCA
AAGGCGTGCATACCCGCAACGCGGCAGTCTTTCAAGGGTGTTTTTAACAT
CCTCTCCCCCTATAATACATTGTGTTTCGCCATTCCTCCCCTCCTCTCTG
CCATTGACTCGTATAAGAGGCAAAGGCGGTTTAGCTGTGCCTCCGTTTTT
CAAGATCTCGTCGAGGTGTTTCGGGGGTTTATTTCCTGACCGTGTGTTGA
TTTCAATTGGCGCGGTTTTTACGATGCCGATGAATCTAGCACAGTACCTG
GAGGAGGGGGAGACGCATGTCCTGTCATACACGGAATGTAGGAAAAATTA
AATGGCTAAAGGTATAGCACACGCGACGGAGATAGATGAGCGAGTGACCC
AAAGGCGTGCATACCCGCAACGCGGCAGTCTTTCAAGGGTGTTTTTAACA
TCCTCTCCCCCTATAATACATTGTGTTTCGCCATTCCTCCCCTCCTCTCT
GCCATTGACTCGTATAAGAGGCAAAGGCGGTTTAGCTGTGCCTCCGTTTT
TCAAGATCTCGTCGAGGTGTTTCGGGGGTTTATTTCCTGACCGTGTGTTG
ATTTCAATTGGCGCGGTTTTTACGATGCCGATGAATCTAGCACAGTACCT
GGAGGAGGGGGAGACGCATGTCCTGTCATACACGGAATGTAGGAAAAATT
AA
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