mRNA_H-paniculata_contig70551.15017.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig70551.15017.1
Unique NamemRNA_H-paniculata_contig70551.15017.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: A0A6D2K0I3_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K0I3_9BRAS)

HSP 1 Score: 82.8 bits (203), Expect = 2.600e-16
Identity = 40/99 (40.40%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   10 VKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGELEWK 306
            VK +LRYL+S++DLN++Y+   NF + G+CD+ Y+ GD ++ RS SG ++ + G  + + SSLQ I + STTEA+ IA++   K+ +++ G+L ++  K
Sbjct: 1154 VKWLLRYLRSSTDLNLVYTKGENFRVQGYCDSDYA-GDLDRRRSISGYVFTVGGNTVSWKSSLQSIAALSTTEAEYIALTKAVKEAIWIRGLLIDMGLK 1251          
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: Q9SHR5_ARATH (F28L22.3 protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SHR5_ARATH)

HSP 1 Score: 81.6 bits (200), Expect = 6.610e-16
Identity = 36/96 (37.50%), Postives = 69/96 (71.88%), Query Frame = 1
Query:   10 VKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGEL 297
            VK ++RYLK A DLN++++ + +F +TG+CD++Y+  D ++ RS SG ++ + G  + + +SLQ + + STTEA+ IA++  AK+ +++ G+L ++
Sbjct: 1177 VKWVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAA-DLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDM 1271          
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: A0A803LCA3_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCA3_CHEQI)

HSP 1 Score: 77.0 bits (188), Expect = 4.860e-15
Identity = 37/96 (38.54%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   10 VKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGEL 297
            VKRI RYL+  +D+ ++Y +D    +TG+ D+ Y+  D +  RS +G ++ L G V+ + S+LQ   + STTEA+ +A+++ AK+ ++L G++GEL
Sbjct:   12 VKRIFRYLRGTADIGLVYGNDKECLVTGYSDSDYAA-DVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGEL 106          
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: V9H1C3_ARATH (Polyprotein n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=V9H1C3_ARATH)

HSP 1 Score: 79.0 bits (193), Expect = 5.830e-15
Identity = 34/96 (35.42%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   10 VKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGEL 297
            VK ILRY++ + DLN++++ +  F +TG+CD+ Y+  D ++ RS SG ++ + G  + + ++LQ +T+ STTEA+ +A++  AK+ +++ G++ +L
Sbjct: 1184 VKWILRYMRGSQDLNLVFTKEKEFRVTGYCDSDYAA-DLDRRRSVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDL 1278          
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: UPI0019029308 (secreted RxLR effector protein 161-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019029308)

HSP 1 Score: 75.1 bits (183), Expect = 7.900e-15
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   13 KRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGELEWK 306
            KRILRYLK    L I+Y       L GF D+ Y  GD    +STSG ++ L  G I ++S  Q I + STTEA+L+A ++CA Q ++L  IL  L ++
Sbjct:   71 KRILRYLKGTLSLGILYQKGEKLNLVGFSDSDY-VGDLNVRKSTSGYVFMLCSGAISWSSKKQPIVTLSTTEAELVAATSCACQAIWLRNILENLHYR 167          
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: A0A3Q7GQM1_SOLLC (Protein kinase domain-containing protein n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7GQM1_SOLLC)

HSP 1 Score: 78.6 bits (192), Expect = 7.920e-15
Identity = 39/97 (40.21%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   10 VKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGELE 300
            VKRI RYL+  SD+ +IY  D+   +TG+ D+ Y  GD +  RS +G ++ L G V+ + ++LQ   + STTEA+ +A++  AK+G++L G++ +LE
Sbjct:  747 VKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDY-VGDVDTRRSMTGYVFTLGGSVVSWKTTLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLE 842          
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: A0A803MLB8_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MLB8_CHEQI)

HSP 1 Score: 74.3 bits (181), Expect = 2.450e-14
Identity = 36/96 (37.50%), Postives = 64/96 (66.67%), Query Frame = 1
Query:   10 VKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGEL 297
            VKRI RYL+  +D+ ++Y +     +TG+ D+ Y+  D +  RS +G ++ L G V+ + S+LQ   + STTEA+ +A+++ AK+ ++L G++GEL
Sbjct:   12 VKRIFRYLRGTADIGLVYGNGKECLVTGYSDSDYAA-DVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGEL 106          
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: A0A6H5KMQ5_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.590e-14
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 MGNVKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGELEWK 306
            M   K +LRYL+    L I+Y     F L  F D+S+   +P+  RST+G ++FL+GG+I + +  Q +T+QST EA++ A+S  A++ VY+S  + EL +K
Sbjct:   35 MTAAKHVLRYLRGNPVLPIVYKRG-QFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFK 134          
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: A0A803LFY2_CHEQI (DLH domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LFY2_CHEQI)

HSP 1 Score: 75.9 bits (185), Expect = 5.670e-14
Identity = 36/96 (37.50%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   10 VKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGEL 297
            VKRI RYL+  +D+ ++Y +D    +TG+ D+ Y+  D +  RS +G ++ L G V+ + S+LQ   + STTEA+ +A+++ AK+ ++L G++G+L
Sbjct:   12 VKRIFRYLRGTADIGLVYGNDKECLVTGYSDSDYAA-DVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGDL 106          
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Match: UPI001B35781A (secreted RxLR effector protein 161-like n=1 Tax=Glycine max TaxID=3847 RepID=UPI001B35781A)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-13
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   10 VKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSGSMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGELE 300
            VKRI RYLK  +D+ +IY S S+  LT + DA ++T D  K RS  G  Y L G ++ + ++LQ   + ST EAK +A+   AK+G++L G++ +LE
Sbjct:   77 VKRIFRYLKGTTDIGLIYESHSDCCLTSYSDADFAT-DLVKRRSLIGYAYTLGGCLVSWKATLQPSVALSTIEAKYMALIEAAKEGIWLRGLINDLE 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70551.15017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2K0I3_9BRAS2.600e-1640.40Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
Q9SHR5_ARATH6.610e-1637.50F28L22.3 protein n=1 Tax=Arabidopsis thaliana TaxI... [more]
A0A803LCA3_CHEQI4.860e-1538.54Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
V9H1C3_ARATH5.830e-1535.42Polyprotein n=3 Tax=Arabidopsis thaliana TaxID=370... [more]
UPI00190293087.900e-1542.86secreted RxLR effector protein 161-like n=1 Tax=Be... [more]
A0A3Q7GQM1_SOLLC7.920e-1540.21Protein kinase domain-containing protein n=1 Tax=S... [more]
A0A803MLB8_CHEQI2.450e-1437.50Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A6H5KMQ5_9PHAE5.590e-1439.22Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A803LFY2_CHEQI5.670e-1437.50DLH domain-containing protein n=1 Tax=Chenopodium ... [more]
UPI001B35781A1.040e-1342.27secreted RxLR effector protein 161-like n=1 Tax=Gl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70551contigH-paniculata_contig70551:8..313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.0
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog4081.Solyc12g009540.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.7499952-CDS-H-paniculata_contig70551:7..3131622930852.7499952-CDS-H-paniculata_contig70551:7..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70551 8..313 -
1691481481.6989272-CDS-H-paniculata_contig70551:7..3131691481481.6989272-CDS-H-paniculata_contig70551:7..313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70551 8..313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70551.15017.1prot_H-paniculata_contig70551.15017.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig70551 8..313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig70551.15017.1

>prot_H-paniculata_contig70551.15017.1 ID=prot_H-paniculata_contig70551.15017.1|Name=mRNA_H-paniculata_contig70551.15017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MGNVKRILRYLKSASDLNIIYSSDSNFELTGFCDASYSTGDPEKARSTSG
SMYFLSGGVIHFNSSLQKITSQSTTEAKLIAMSTCAKQGVYLSGILGELE
WK
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mRNA from alignment at H-paniculata_contig70551:8..313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig70551.15017.1 ID=mRNA_H-paniculata_contig70551.15017.1|Name=mRNA_H-paniculata_contig70551.15017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig70551:8..313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAACGTGAAGCGTATCTTGCGCTACCTAAAAAGTGCGTCAGACCT AAACATTATCTACAGTAGCGACTCCAACTTCGAGCTAACCGGCTTCTGCG ACGCCTCCTATAGCACTGGCGACCCCGAGAAAGCTAGGTCAACCTCGGGG AGCATGTACTTCCTCTCCGGTGGAGTTATTCATTTCAATTCGAGCCTACA GAAAATTACGTCTCAGTCAACCACAGAGGCGAAACTAATTGCCATGAGCA CTTGCGCTAAACAAGGAGTTTACCTATCCGGCATCCTCGGAGAGCTTGAA TGGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig70551:8..313-

>mRNA_H-paniculata_contig70551.15017.1 ID=mRNA_H-paniculata_contig70551.15017.1|Name=mRNA_H-paniculata_contig70551.15017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig70551:8..313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAACGTGAAGCGTATCTTGCGCTACCTAAAAAGTGCGTCAGACCT
AAACATTATCTACAGTAGCGACTCCAACTTCGAGCTAACCGGCTTCTGCG
ACGCCTCCTATAGCACTGGCGACCCCGAGAAAGCTAGGTCAACCTCGGGG
AGCATGTACTTCCTCTCCGGTGGAGTTATTCATTTCAATTCGAGCCTACA
GAAAATTACGTCTCAGTCAACCACAGAGGCGAAACTAATTGCCATGAGCA
CTTGCGCTAAACAAGGAGTTTACCTATCCGGCATCCTCGGAGAGCTTGAA
TGGAAGATGGGAAACGTGAAGCGTATCTTGCGCTACCTAAAAAGTGCGTC
AGACCTAAACATTATCTACAGTAGCGACTCCAACTTCGAGCTAACCGGCT
TCTGCGACGCCTCCTATAGCACTGGCGACCCCGAGAAAGCTAGGTCAACC
TCGGGGAGCATGTACTTCCTCTCCGGTGGAGTTATTCATTTCAATTCGAG
CCTACAGAAAATTACGTCTCAGTCAACCACAGAGGCGAAACTAATTGCCA
TGAGCACTTGCGCTAAACAAGGAGTTTACCTATCCGGCATCCTCGGAGAG
CTTGAATGGAAG
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