mRNA_H-paniculata_contig70515.15013.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig70515.15013.1
Unique NamemRNA_H-paniculata_contig70515.15013.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: D7G934_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G934_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.870e-21
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLLAAIESASGV 186
            VGA+VVG DTSFGF+QLC+ S YI+ GA FLGTNPD ADRVG+  +PGTGP+L +I++ASGV
Sbjct:  161 VGAVVVGLDTSFGFRQLCVASSYIQSGAHFLGTNPDVADRVGSLLMPGTGPMLTSIQTASGV 222          
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A836CPG6_9STRA (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.050e-17
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLLAAIESASGV 186
            V A+ VG+D SFGF+Q+ + S Y++ G  F+G NPDNADRVG    PGTGPLLAAI+SASG 
Sbjct:  167 VQAVCVGWDRSFGFRQMSIASAYLQQGVGFIGANPDNADRVGPLLFPGTGPLLAAIQSASGA 228          
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A7S0CUU7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CUU7_MICPS)

HSP 1 Score: 68.2 bits (165), Expect = 7.290e-12
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLLAAIESASGVS 189
            VGA++VG D +F + +L   SL I+ GA F+ TNPD AD +G   +PG G ++AA+E+ASGVS
Sbjct:  148 VGAVIVGQDVAFTYAKLAYASLAIQRGAAFVATNPDAADALGPGMMPGAGAIVAAVETASGVS 210          
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A5B8MVZ1_9CHLO (Phosphoglycolate phosphatase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MVZ1_9CHLO)

HSP 1 Score: 67.0 bits (162), Expect = 1.710e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 VGAMVVGYDTSFGFKQLCMVSLYIKG--GAPFLGTNPDNADRVGT--RSIPGTGPLLAAIESASG 183
            VGA+VVG D SF + +LC+ SLY+    G  F+ TN D  DRVG   R IPG GP++AA+E+ASG
Sbjct:  177 VGALVVGVDDSFSYSKLCVASLYLSQVEGCVFVATNRDVGDRVGDDGRRIPGAGPVVAAVETASG 241          
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A7S3FL06_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FL06_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 3.620e-9
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 VGAMVVGYDTSFGFKQLCMVSLYI---KGGAPFLGTNPDNADRVGT--RSIPGTGPLLAAIESASG 183
            VGA+V G   +F +++LC+ SLY+   +  A F+ TN D  DRVG+  R IPG GP LAAI++ASG
Sbjct:  144 VGAVVAGGGDTFSYRKLCIASLYLSSRESNAIFVATNLDVGDRVGSDGRLIPGAGPCLAAIQTASG 209          
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A8HVX7_CHLRE (Phosphoglycolate phosphatase n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8HVX7_CHLRE)

HSP 1 Score: 56.2 bits (134), Expect = 1.340e-7
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 VGAMVVGYDTSFGFKQLCMVSLYIKG--GAPFLGTNPDNADRVGT-RSIPGTGPLLAAIESASGVS 189
            VGA+VVG+D +F + +L   S++++   G   + TN D AD +G  R +PGTG L+ A+E+ASGVS
Sbjct:  198 VGAVVVGWDPNFSYSRLVYASIHLRELPGCLLVATNMDCADHIGGGRMMPGTGGLVKAVETASGVS 263          
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A835TAA4_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TAA4_CHLIN)

HSP 1 Score: 56.2 bits (134), Expect = 1.350e-7
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 VGAMVVGYDTSFGFKQLCMVSLYIKG--GAPFLGTNPDNADRVGT-RSIPGTGPLLAAIESASGVS 189
            VGA+VVG+D +F + +L   S++++   G   + TN D AD +G  R +PGTG L+ A+E+ASGVS
Sbjct:  206 VGAVVVGWDPNFSYSRLVYASIHLRELPGCLLVATNMDCADHIGGGRMMPGTGGLVKAVETASGVS 271          
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A800BRA9_9CHLR (HAD family hydrolase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A800BRA9_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 1.980e-7
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   10 MVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLLAAIESASGV 186
            +VVG D    +++L + +L I+GGA F+GTNPD         +PG G +LAA+E+A+GV
Sbjct:  107 VVVGMDRQLTYEKLKIATLLIRGGARFIGTNPDKTFPSEEGIVPGNGAILAALEAATGV 165          
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A7J6NTG3_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NTG3_PEROL)

HSP 1 Score: 53.1 bits (126), Expect = 1.690e-6
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAP---FLGTNPDNADRVGTRSIPGTGPLLAAIESASGVSD 192
            +  +VVG+D SF FKQ+C  SL  +       F  TN D+ DR+G   IP TG +LA++ + + +S+
Sbjct:  279 IDGIVVGWDLSFSFKQICRASLAFQLADEDFFFYATNDDSFDRIGPWKIPATGTILASLNAVARISE 345          
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A7J6R2H0_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R2H0_PEROL)

HSP 1 Score: 53.1 bits (126), Expect = 1.710e-6
Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAP---FLGTNPDNADRVGTRSIPGTGPLLAAIESASGVSD 192
            +  +VVG+D SF FKQ+C  SL  +       F  TN D+ DR+G   IP TG +LA++ + + +S+
Sbjct:  157 IDGIVVGWDLSFSFKQICRASLAFQLADEDFFFYATNDDSFDRIGPWKIPATGTILASLNAVARISE 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G934_ECTSI4.870e-2169.35Haloacid dehalogenase-like hydrolase family protei... [more]
A0A836CPG6_9STRA5.050e-1761.29Haloacid dehalogenase-like hydrolase family protei... [more]
A0A7S0CUU7_MICPS7.290e-1250.79Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A5B8MVZ1_9CHLO1.710e-1153.85Phosphoglycolate phosphatase n=1 Tax=Chloropicon p... [more]
A0A7S3FL06_9CHLO3.620e-950.00Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A8HVX7_CHLRE1.340e-745.45Phosphoglycolate phosphatase n=2 Tax=Chlamydomonas... [more]
A0A835TAA4_CHLIN1.350e-745.45Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A800BRA9_9CHLR1.980e-744.07HAD family hydrolase n=1 Tax=Anaerolineae bacteriu... [more]
A0A7J6NTG3_PEROL1.690e-638.81Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
A0A7J6R2H0_PEROL1.710e-638.81Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70515contigH-paniculata_contig70515:127..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue3.4e-15
Seed eggNOG ortholog2880.D7G934
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphoglycolate phosphatase activity
EggNOG OGsCOG0647@1,KOG2882@2759
EC3.1.3.18,3.1.3.41,3.1.3.48
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Exons1
Model size201
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.2739806-UTR-H-paniculata_contig70515:126..1351622930852.2739806-UTR-H-paniculata_contig70515:126..135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig70515 127..135 +
1691481481.4245105-UTR-H-paniculata_contig70515:126..1351691481481.4245105-UTR-H-paniculata_contig70515:126..135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig70515 127..135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.2863564-CDS-H-paniculata_contig70515:135..3271622930852.2863564-CDS-H-paniculata_contig70515:135..327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70515 136..327 +
1691481481.4398522-CDS-H-paniculata_contig70515:135..3271691481481.4398522-CDS-H-paniculata_contig70515:135..327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70515 136..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70515.15013.1prot_H-paniculata_contig70515.15013.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig70515 136..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig70515.15013.1

>prot_H-paniculata_contig70515.15013.1 ID=prot_H-paniculata_contig70515.15013.1|Name=mRNA_H-paniculata_contig70515.15013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLL
AAIESASGVSDPRG
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mRNA from alignment at H-paniculata_contig70515:127..327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig70515.15013.1 ID=mRNA_H-paniculata_contig70515.15013.1|Name=mRNA_H-paniculata_contig70515.15013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig70515:127..327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGAGCGATGGTGGTGGGGTATGACACGTCCTTCGGGTTCAAGCAATT GTGCATGGTATCCTTGTACATAAAGGGAGGAGCGCCGTTCTTGGGCACCA ACCCAGACAACGCGGATCGGGTGGGAACTCGGTCGATACCCGGCACGGGC CCGCTGTTGGCCGCAATCGAGTCCGCTTCTGGGGTAAGTGATCCGAGAGG A
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Coding sequence (CDS) from alignment at H-paniculata_contig70515:127..327+

>mRNA_H-paniculata_contig70515.15013.1 ID=mRNA_H-paniculata_contig70515.15013.1|Name=mRNA_H-paniculata_contig70515.15013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig70515:127..327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTGGGGTATGACACGTCCTTCGGGTTCAAGCAATTGTGCATGGT
ATCCTTGTACATAAAGGGAGGAGCGCCGTTCTTGGGCACCAACCCAGACA
ACGCGGATCGGGTGGGAACTCGGTCGATACCCGGCACGGGCCCGCTGTTG
GCCGCAATCGAGTCCGCTTCTGGGGTAAGTGATCCGAGAGGAATGGTGGT
GGGGTATGACACGTCCTTCGGGTTCAAGCAATTGTGCATGGTATCCTTGT
ACATAAAGGGAGGAGCGCCGTTCTTGGGCACCAACCCAGACAACGCGGAT
CGGGTGGGAACTCGGTCGATACCCGGCACGGGCCCGCTGTTGGCCGCAAT
CGAGTCCGCTTCTGGGGTAAGTGATCCGAGAGGA
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