mRNA_H-paniculata_contig70515.15013.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: D7G934_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G934_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 4.870e-21 Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 1
Query: 1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLLAAIESASGV 186
VGA+VVG DTSFGF+QLC+ S YI+ GA FLGTNPD ADRVG+ +PGTGP+L +I++ASGV
Sbjct: 161 VGAVVVGLDTSFGFRQLCVASSYIQSGAHFLGTNPDVADRVGSLLMPGTGPMLTSIQTASGV 222
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A836CPG6_9STRA (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG6_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 5.050e-17 Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLLAAIESASGV 186
V A+ VG+D SFGF+Q+ + S Y++ G F+G NPDNADRVG PGTGPLLAAI+SASG
Sbjct: 167 VQAVCVGWDRSFGFRQMSIASAYLQQGVGFIGANPDNADRVGPLLFPGTGPLLAAIQSASGA 228
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A7S0CUU7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CUU7_MICPS) HSP 1 Score: 68.2 bits (165), Expect = 7.290e-12 Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLLAAIESASGVS 189
VGA++VG D +F + +L SL I+ GA F+ TNPD AD +G +PG G ++AA+E+ASGVS
Sbjct: 148 VGAVIVGQDVAFTYAKLAYASLAIQRGAAFVATNPDAADALGPGMMPGAGAIVAAVETASGVS 210
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A5B8MVZ1_9CHLO (Phosphoglycolate phosphatase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MVZ1_9CHLO) HSP 1 Score: 67.0 bits (162), Expect = 1.710e-11 Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 1 VGAMVVGYDTSFGFKQLCMVSLYIKG--GAPFLGTNPDNADRVGT--RSIPGTGPLLAAIESASG 183
VGA+VVG D SF + +LC+ SLY+ G F+ TN D DRVG R IPG GP++AA+E+ASG
Sbjct: 177 VGALVVGVDDSFSYSKLCVASLYLSQVEGCVFVATNRDVGDRVGDDGRRIPGAGPVVAAVETASG 241
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A7S3FL06_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FL06_9CHLO) HSP 1 Score: 60.5 bits (145), Expect = 3.620e-9 Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 1 VGAMVVGYDTSFGFKQLCMVSLYI---KGGAPFLGTNPDNADRVGT--RSIPGTGPLLAAIESASG 183
VGA+V G +F +++LC+ SLY+ + A F+ TN D DRVG+ R IPG GP LAAI++ASG
Sbjct: 144 VGAVVAGGGDTFSYRKLCIASLYLSSRESNAIFVATNLDVGDRVGSDGRLIPGAGPCLAAIQTASG 209
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A8HVX7_CHLRE (Phosphoglycolate phosphatase n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8HVX7_CHLRE) HSP 1 Score: 56.2 bits (134), Expect = 1.340e-7 Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 1 VGAMVVGYDTSFGFKQLCMVSLYIKG--GAPFLGTNPDNADRVGT-RSIPGTGPLLAAIESASGVS 189
VGA+VVG+D +F + +L S++++ G + TN D AD +G R +PGTG L+ A+E+ASGVS
Sbjct: 198 VGAVVVGWDPNFSYSRLVYASIHLRELPGCLLVATNMDCADHIGGGRMMPGTGGLVKAVETASGVS 263
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A835TAA4_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TAA4_CHLIN) HSP 1 Score: 56.2 bits (134), Expect = 1.350e-7 Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 1 VGAMVVGYDTSFGFKQLCMVSLYIKG--GAPFLGTNPDNADRVGT-RSIPGTGPLLAAIESASGVS 189
VGA+VVG+D +F + +L S++++ G + TN D AD +G R +PGTG L+ A+E+ASGVS
Sbjct: 206 VGAVVVGWDPNFSYSRLVYASIHLRELPGCLLVATNMDCADHIGGGRMMPGTGGLVKAVETASGVS 271
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A800BRA9_9CHLR (HAD family hydrolase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A800BRA9_9CHLR) HSP 1 Score: 55.5 bits (132), Expect = 1.980e-7 Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 10 MVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLLAAIESASGV 186
+VVG D +++L + +L I+GGA F+GTNPD +PG G +LAA+E+A+GV
Sbjct: 107 VVVGMDRQLTYEKLKIATLLIRGGARFIGTNPDKTFPSEEGIVPGNGAILAALEAATGV 165
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A7J6NTG3_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NTG3_PEROL) HSP 1 Score: 53.1 bits (126), Expect = 1.690e-6 Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAP---FLGTNPDNADRVGTRSIPGTGPLLAAIESASGVSD 192
+ +VVG+D SF FKQ+C SL + F TN D+ DR+G IP TG +LA++ + + +S+
Sbjct: 279 IDGIVVGWDLSFSFKQICRASLAFQLADEDFFFYATNDDSFDRIGPWKIPATGTILASLNAVARISE 345
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Match: A0A7J6R2H0_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R2H0_PEROL) HSP 1 Score: 53.1 bits (126), Expect = 1.710e-6 Identity = 26/67 (38.81%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1 VGAMVVGYDTSFGFKQLCMVSLYIKGGAP---FLGTNPDNADRVGTRSIPGTGPLLAAIESASGVSD 192
+ +VVG+D SF FKQ+C SL + F TN D+ DR+G IP TG +LA++ + + +S+
Sbjct: 157 IDGIVVGWDLSFSFKQICRASLAFQLADEDFFFYATNDDSFDRIGPWKIPATGTILASLNAVARISE 223 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70515.15013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig70515.15013.1 >prot_H-paniculata_contig70515.15013.1 ID=prot_H-paniculata_contig70515.15013.1|Name=mRNA_H-paniculata_contig70515.15013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp MVVGYDTSFGFKQLCMVSLYIKGGAPFLGTNPDNADRVGTRSIPGTGPLLback to top mRNA from alignment at H-paniculata_contig70515:127..327+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig70515.15013.1 ID=mRNA_H-paniculata_contig70515.15013.1|Name=mRNA_H-paniculata_contig70515.15013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig70515:127..327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig70515:127..327+ >mRNA_H-paniculata_contig70515.15013.1 ID=mRNA_H-paniculata_contig70515.15013.1|Name=mRNA_H-paniculata_contig70515.15013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig70515:127..327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |