mRNA_H-paniculata_contig70483.15008.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig70483.15008.1
Unique NamemRNA_H-paniculata_contig70483.15008.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: A0A6H5KI57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KI57_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.400e-22
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    4 MDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            MD+PFPGVPPLKPPG LKRPETLTT LPNGLRVASQETYGALC+ GI+V+AG
Sbjct:  114 MDRPFPGVPPLKPPGALKRPETLTTTLPNGLRVASQETYGALCTFGIVVNAG 165
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BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: A0A835Z8C4_9STRA (Mitochondrial processing peptidase alpha subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8C4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.930e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    4 MDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            M +P+PG+PPLKP   L RPET+ + L +GLRVASQETYG LC+ G++V+AG
Sbjct:   74 MSRPWPGIPPLKPSNELPRPETIVSTLSSGLRVASQETYGQLCTFGVLVNAG 125
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BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: W4HAL2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAL2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.570e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 AMDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            ++D+P PG+P LKP   L+ P T TT+LPNGLRV SQETYG   + G+ VDAG
Sbjct:   71 SLDEPIPGLPVLKPASQLQAPRTETTVLPNGLRVISQETYGQASTVGLFVDAG 123
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BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: A0A397C8Q4_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8Q4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.720e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 AMDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            ++D+P PG+P LKP   L+ P T TT+LPNGLRV SQETYG   + G+ VDAG
Sbjct:   72 SLDEPIPGLPVLKPASQLQAPRTETTVLPNGLRVISQETYGQASTVGLFVDAG 124
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BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: W4H991_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H991_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.830e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 AMDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            ++D+P PG+P LKP   L+ P T TT+LPNGLRV SQETYG   + G+ VDAG
Sbjct:   71 SLDEPIPGLPVLKPASQLQAPRTETTVLPNGLRVISQETYGQASTVGLFVDAG 123
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BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: A0A024UTA5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTA5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.830e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 AMDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            ++D+P PG+P LKP   L+ P T TT+LPNGLRV SQETYG   + G+ VDAG
Sbjct:   73 SLDEPIPGLPVLKPASQLQAPRTETTVLPNGLRVISQETYGQASTVGLFVDAG 125
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BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: A0A6G0XPI8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPI8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.960e-11
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 AMDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            ++D+P PG+P LKP   L+ P T TT+LPNGLRV SQETYG   + G+ +DAG
Sbjct:   64 SLDEPIPGLPVLKPASQLQAPRTETTVLPNGLRVISQETYGQASTVGLFIDAG 116
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BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: A0A067CVS9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CVS9_SAPPC)

HSP 1 Score: 63.9 bits (154), Expect = 1.480e-10
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 AMDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            ++D+P  G+P LKP   LK P+T TT+LPNGLRV SQETYG   + G+ VDAG
Sbjct:   64 SLDEPMHGLPVLKPASQLKAPQTETTVLPNGLRVISQETYGQATTIGLFVDAG 116
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BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: T0Q9K0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q9K0_SAPDV)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-10
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 AMDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            ++D+P  G+P LKP   LK P+T TT+LPNGLRV SQETYG   + G+ VDAG
Sbjct:   64 SLDEPMHGLPVLKPASQLKAPQTETTVLPNGLRVISQETYGQATTIGLFVDAG 116
[Close]
BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Match: A0A485LBQ0_9STRA (Aste57867_18949 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBQ0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-10
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 AMDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVDAG 159
            ++D+P PG+P LKP   LK P T  T+LPNGLRV SQETYG   + G+ +DAG
Sbjct:   72 SLDEPIPGLPVLKPASQLKAPRTELTVLPNGLRVISQETYGQASTVGLFIDAG 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70483.15008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI57_9PHAE8.400e-2286.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z8C4_9STRA3.930e-1361.54Mitochondrial processing peptidase alpha subunit n... [more]
W4HAL2_9STRA5.570e-1158.49Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397C8Q4_9STRA5.720e-1158.49Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
W4H991_9STRA5.830e-1158.49Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A024UTA5_9STRA5.830e-1158.49Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XPI8_9STRA7.960e-1156.60Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CVS9_SAPPC1.480e-1058.49Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0Q9K0_SAPDV1.490e-1058.49Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]
A0A485LBQ0_9STRA1.490e-1056.60Aste57867_18949 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70483contigH-paniculata_contig70483:406..564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue2.7e-18
Seed eggNOG ortholog2880.D7FU77
KEGG koko:K01412
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0612@1,KOG2067@2759
EC3.4.24.64
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Exons1
Model size159
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930851.3529305-CDS-H-paniculata_contig70483:405..5611622930851.3529305-CDS-H-paniculata_contig70483:405..561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70483 406..561 -
1691481480.9664156-CDS-H-paniculata_contig70483:405..5611691481480.9664156-CDS-H-paniculata_contig70483:405..561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70483 406..561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930851.37895-UTR-H-paniculata_contig70483:561..5641622930851.37895-UTR-H-paniculata_contig70483:561..564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig70483 562..564 -
1691481480.9778752-UTR-H-paniculata_contig70483:561..5641691481480.9778752-UTR-H-paniculata_contig70483:561..564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig70483 562..564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70483.15008.1prot_H-paniculata_contig70483.15008.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig70483 406..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig70483.15008.1

>prot_H-paniculata_contig70483.15008.1 ID=prot_H-paniculata_contig70483.15008.1|Name=mRNA_H-paniculata_contig70483.15008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MDKPFPGVPPLKPPGTLKRPETLTTMLPNGLRVASQETYGALCSCGIIVD
AG
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mRNA from alignment at H-paniculata_contig70483:406..564-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig70483.15008.1 ID=mRNA_H-paniculata_contig70483.15008.1|Name=mRNA_H-paniculata_contig70483.15008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig70483:406..564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGATGGACAAGCCTTTCCCGGGCGTGCCCCCTCTCAAGCCGCCGGGGAC
CCTGAAACGGCCGGAGACCCTCACGACAATGTTGCCCAACGGGCTGCGGG
TAGCGTCTCAGGAGACGTACGGGGCGCTCTGTTCTTGCGGGATAATCGTT
GACGCCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig70483:406..564-

>mRNA_H-paniculata_contig70483.15008.1 ID=mRNA_H-paniculata_contig70483.15008.1|Name=mRNA_H-paniculata_contig70483.15008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig70483:406..564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAAGCCTTTCCCGGGCGTGCCCCCTCTCAAGCCGCCGGGGACCCT
GAAACGGCCGGAGACCCTCACGACAATGTTGCCCAACGGGCTGCGGGTAG
CGTCTCAGGAGACGTACGGGGCGCTCTGTTCTTGCGGGATAATCGTTGAC
GCCGGGATGGACAAGCCTTTCCCGGGCGTGCCCCCTCTCAAGCCGCCGGG
GACCCTGAAACGGCCGGAGACCCTCACGACAATGTTGCCCAACGGGCTGC
GGGTAGCGTCTCAGGAGACGTACGGGGCGCTCTGTTCTTGCGGGATAATC
GTTGACGCCGGG
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