mRNA_H-paniculata_contig7040.15000.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7040.15000.1
Unique NamemRNA_H-paniculata_contig7040.15000.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7040.15000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7040contigH-paniculata_contig7040:5629..7221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size243
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7040.15000.1prot_H-paniculata_contig7040.15000.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7040 5629..7219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930850.4117854-CDS-H-paniculata_contig7040:5628..57631622930850.4117854-CDS-H-paniculata_contig7040:5628..5763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7040 5629..5763 +
1691481480.5863838-CDS-H-paniculata_contig7040:5628..57631691481480.5863838-CDS-H-paniculata_contig7040:5628..5763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7040 5629..5763 +
1622930850.428643-CDS-H-paniculata_contig7040:6380..64311622930850.428643-CDS-H-paniculata_contig7040:6380..6431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7040 6381..6431 +
1691481480.5960932-CDS-H-paniculata_contig7040:6380..64311691481480.5960932-CDS-H-paniculata_contig7040:6380..6431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7040 6381..6431 +
1622930850.4492888-CDS-H-paniculata_contig7040:7165..72191622930850.4492888-CDS-H-paniculata_contig7040:7165..7219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7040 7166..7219 +
1691481480.6116955-CDS-H-paniculata_contig7040:7165..72191691481480.6116955-CDS-H-paniculata_contig7040:7165..7219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7040 7166..7219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7040.15000.1

>prot_H-paniculata_contig7040.15000.1 ID=prot_H-paniculata_contig7040.15000.1|Name=mRNA_H-paniculata_contig7040.15000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
YYYGDDDLKQRCEEKSRVTSFNAIAAAIYDPDAGYHSETPHHLLPYNVIP
TSSDQDYTAIVMPMSLVEKVQWDGSSEKVY
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mRNA from alignment at H-paniculata_contig7040:5629..7221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7040.15000.1 ID=mRNA_H-paniculata_contig7040.15000.1|Name=mRNA_H-paniculata_contig7040.15000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1593bp|location=Sequence derived from alignment at H-paniculata_contig7040:5629..7221+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTATTATGGTGATGATGATTTGAAACAACGATGTGAGGAAAAGTCTCG
AGTCACATCTTTCAACGCCATCGCAGCAGCTATCTATGACCCAGACGCCG
GGTATCACAGCGAAACACCACACCACCTGCTTCCGGTGAGTTGACTCAAG
TGCGTTGATTCAGCTAAGAGGTTTAGTTATCATCCAAGGTTGGCTGCTTC
GTCTACGTTGACCATGATTTTCCACACCACGACATACCGTAGTTGCTGTC
CATTCTCGTGTCGGCGCTCTACATCGATACCGACTTGTTGGTGGCGACCG
AGCTATTCACGCGAGTGTTATTTCCAGTGCGGGGAACAACATTGACTAAA
GTTGCGGGTTGCTGACGTTTAACGCGTCACGACTGTGCCGTACACTTGAC
CGAGACACGTGTGGTAGTGTGTATCGTGATACCGTTTGATGTTTGATGTT
TAATGTATCAAGGATCTGGTGGATTTGTCGAATTGTGTTAGTGCCGTGAC
TGCGTTTAACTTCGATCACACCCGCGTATGCCTGGGCATATATATGCTTG
TCAAAGTCACCGCTGGCATGAAATCTAGACTGGGATGACAAGTAGTACGA
ATTTCAAACTTCTAAGTACCAATAACGGTTTCGCCTCCAAACTTTTGCAT
AGAGGCGGTGGAGAAGTTGGTTGAGCACGAGCTTCAGTGTTTAGCGGTTC
CGATCTCACGACGTACCCCTACCTGCCTCGCGTTGTTTTCGCTTCTGAAC
AGTATAACGTTATACCTACCAGCTCCGATCAAGATTACACCGCGATAGTA
ATGGTGAGACCCCTGCTGCCTTGGTAAAAGTTATGCATATATATTGCGCC
CTGCTGTGGTATGAATATTACACCTACCTAACGCGCCACTCGTTTGAGGT
CTTCACTTTGGGAGTAACGGTACAAGCTGTTCAAGTACAATTTGCGTTCA
GCGATATGTATATATATATTGACCTAGAAAGGTACCAAGTCGCGCGCTGT
GTTCATGAAAGTTCTTGCTGTGTCGTCGTGAACAAGTTGAATTGCCTACG
CGAGTTCAACGGCGCGCCGTTCTTGAGGTTTTCACACGTATTCATAGTTA
AGGGATATACAGGCAACGTCGAGGGAGACATCGTATTCCGTCCGCGTGAA
CGTGCCACAGCTTCACGTAGTGTATCGCCCGCCCTTGCTTGTTTTACATA
CATGTCACCCTGCAGCCGCTTGCTTCTTCCAACCGCATTACCCTCCCCGA
CTTGATTGGTCGTTCCATGTATATCTAGCACTACACAACCGGCACCCAGT
GTCATGCTGAACCCTCACCATGGCTCCGCAAGCCCGTAATATATTCATGA
GTTCTCGGGGGATTCCGTAAGTGTCTAGGCACATATACGTTTGACCGAGA
TGGGAAAACGAGCATATTCTGCGGATTTGAGTTTGCGTCATAACCGCCGA
CGAGGCGCCCTCAGCAAGTTGAACTACGACTGACTGACCAACATACTTGT
TCCTTTTGTCTGCTTGTTTTTGTGGGATTAACCACAGCCAATGAGCCTGG
TTGAGAAAGTCCAATGGGACGGAAGCTCGGAGAAGGTGTACCA
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Coding sequence (CDS) from alignment at H-paniculata_contig7040:5629..7221+

>mRNA_H-paniculata_contig7040.15000.1 ID=mRNA_H-paniculata_contig7040.15000.1|Name=mRNA_H-paniculata_contig7040.15000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig7040:5629..7221+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTATTATGGTGATGATGATTTGAAACAACGATGTGAGGAAAAGTCTCG
AGTCACATCTTTCAACGCCATCGCAGCAGCTATCTATGACCCAGACGCCG
GGTATCACAGCGAAACACCACACCACCTGCTTCCGTACTATTATGGTGAT
GATGATTTGAAACAACGATGTGAGGAAAAGTCTCGAGTCACATCTTTCAA
CGCCATCGCAGCAGCTATCTATGACCCAGACGCCGGGTATCACAGCGAAA
CACCACACCACCTGCTTCCGTATAACGTTATACCTACCAGCTCCGATCAA
GATTACACCGCGATAGTAATGTATAACGTTATACCTACCAGCTCCGATCA
AGATTACACCGCGATAGTAATGCCAATGAGCCTGGTTGAGAAAGTCCAAT
GGGACGGAAGCTCGGAGAAGGTGTACCCAATGAGCCTGGTTGAGAAAGTC
CAATGGGACGGAAGCTCGGAGAAGGTGTAC
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