mRNA_H-paniculata_contig70374.14993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig70374.14993.1
Unique NamemRNA_H-paniculata_contig70374.14993.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.750e-27
Identity = 84/246 (34.15%), Postives = 115/246 (46.75%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPPLPLPAVQEAAEPGGRDDLTFSPPIPLPFLGRGIPHVRHTGQSAVEEDDMDQGGDELPDQIDLRTSNDSTSSSDRSSSTAGSESISNDAXXXXXXXXXXXRNEASLS-----DQDIE-------------TPPAARTAAH--QLGPHMSGLHDGEEIREGRTRAQTREYHEENAEALFGMLGP 678
            +PFLKP YC+W RPSK  PK ESCFYVGPS +HPRD  R+LTR   + ETR VTWEA  + LPP   P   E AE GG +          P +GRG+ H      +AV        G+ +     +   +   S S          S+S+ A           ++   +      DQ+ +             +PP AR   H  +L    +   + +E+REGRTRAQTR  ++++   L   LGP
Sbjct:  506 YPFLKPAYCKWQRPSKLFPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRDVTWEALPSQLPPPQPPLPIEIAEEGGEESDNDVETEVWPLVGRGVAHTLLRNNAAVVP-----SGEAIDVVESVDAGSVGRSPSPXXXXXXXVPSVSSPAPEFTDGDGQGGQDVGEIESMGPGDQETDPVXXXXXEVEAEASPPVARRPRHVAELADFNNPARENDEVREGRTRAQTRAVNQQSVPGLVATLGP 746
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BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.400e-26
Identity = 88/259 (33.98%), Postives = 117/259 (45.17%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPPLPLPAVQEAAEPGGRDDLTFSPPIPLPFLGRGIPHV---RHTGQSAVEEDDMDQ-GGDELPDQIDLRTSNDSTSSSDRSS----STAGSESISNDAXXXXXXXXXXXRNEASLSDQDIET-----------------------PPAARTAAH--QLGPHMSGLHDGEEIREGRTRAQTREYHEENAEALFGMLGP 678
            +PFLKP YCRW RP+K LPK ESCFYVGPS +HPRD  R+LTR   + ETR VTWE   + LPPL      E AE GG D          P +GRG+ H    R    S    ++++  G   +     + +S    SS   +S    ++  S    ND                   D + E+                       PPAAR   H  +L    +   + +E+REGRTRAQTR  ++++   L   LGP
Sbjct:  156 YPFLKPAYCRWQRPTKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRDVTWEVLQSQLPPLQPSLPIEVAEEGGEDSDDNVETEVWPLVGRGVAHTLLKRDAVPSGARVEEVESVGAGSVGPSFSVPSSPAEPSSLANNSFDSVASVSSPMPVNDGEGQGGQESGELEMGDPGGDDEEESMEQXXXXXXXXXXXXXPVEAEAPPPAARRPRHVAELADFNTASRENDEVREGRTRAQTRAVNQQSVPGLVASLGP 414
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BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.460e-26
Identity = 88/259 (33.98%), Postives = 117/259 (45.17%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPPLPLPAVQEAAEPGGRDDLTFSPPIPLPFLGRGIPHV---RHTGQSAVEEDDMDQ-GGDELPDQIDLRTSNDSTSSSDRSS----STAGSESISNDAXXXXXXXXXXXRNEASLSDQDIET-----------------------PPAARTAAH--QLGPHMSGLHDGEEIREGRTRAQTREYHEENAEALFGMLGP 678
            +PFLKP YCRW RP+K LPK ESCFYVGPS +HPRD  R+LTR   + ETR VTWE   + LPPL      E AE GG D          P +GRG+ H    R    S    ++++  G   +     + +S    SS   +S    ++  S    ND                   D + E+                       PPAAR   H  +L    +   + +E+REGRTRAQTR  ++++   L   LGP
Sbjct:  423 YPFLKPAYCRWQRPTKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRDVTWEVLQSQLPPLQPSLPIEVAEEGGEDSDDNVETEVWPLVGRGVAHTLLKRDAVPSGARVEEVESVGAGSVGPSFSVPSSPAEPSSLANNSFDSVASVSSPMPVNDGEGQGGQESGELEMGDPGGDDEEESMEQXXXXXXXXXXXXXPVEAEAPPPAARRPRHVAELADFNTASRENDEVREGRTRAQTRAVNQQSVPGLVASLGP 681
[Close]
BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5KDR1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR1_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 7.040e-26
Identity = 62/117 (52.99%), Postives = 72/117 (61.54%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPPL--PLPAVQEAAEPGGRDDLTFSPPIPLPFLGRGIPHVRHTGQSAVEEDDMDQ 345
            +PFLKP YCRW RPSK LPK ESCFYVGPS +HPRD  R+LTRG  + ETR VTWEA  + LPP   PLP   E AE GG  +         P +G G PH+ H   SA     +D+
Sbjct:   62 YPFLKPAYCRWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRGGIIQETRDVTWEALPSELPPPQPPLPIDLEVAEEGGEGNDDDVEAEAWPLMGSGKPHI-HLQPSAPPSGAVDE 177
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BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 4.710e-24
Identity = 54/100 (54.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPPLPLPAVQEAAEPGGRDDLTFSPPIPLPFLGRGIPHV 300
            +PFLKP YCRW RP+K LPK ESCFYVGPS +HPRD  R+LTR   + ETR VTWE   + LPPL      E AE GG D          P +GRG+ H 
Sbjct:  368 YPFLKPAYCRWQRPTKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRDVTWEVLQSQLPPLQPSLPIEVAEEGGEDSDDNVETEVWPLVGRGVAHT 467
[Close]
BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.570e-21
Identity = 53/88 (60.23%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPP-----LPLPAVQEAAEPGG--RDD 243
            +PFLKP YCRW RPSK LPK E+CFYVGPS +HPRD  R+LTR   + ETR VTWEA  + LPP     LP+    E AE GG  RDD
Sbjct:  156 YPFLKPAYCRWQRPSKLLPKGEACFYVGPSRDHPRDCHRVLTRVGTIQETRNVTWEALPSQLPPPQSSLLPI----EVAEEGGEERDD 239
[Close]
BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.080e-21
Identity = 83/236 (35.17%), Postives = 102/236 (43.22%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPPLPLPAVQEAAEPGGR---DDLT----FSPPIPLPFLGRGIPHVRHTGQSAVEEDDMDQGGDELPDQIDLRTSNDSTSSSDRSSSTAGSESISNDAXXXXXXXXXXXRNEASLSDQDIE-TPPAARTAAH--QLGPHMSGLHDGEEIREGRTRAQTREYHEENAEALFGMLGP 678
            +PFLKP YC+W RPSK LPK ESCFYVGPS +HPRD  R+LTR   + ETR VTWEA  + LPP   P   E AE  G    DD+                              EE+ MD                                          XXXXXXX         ++E +PPAAR   H   L    +   + +E+R GRTRAQTR  ++++   L   LGP
Sbjct:  399 YPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTWEALPSQLPPPQPPLPIEVAEEEGEESDDDVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESMD------------------------------------------XXXXXXXXXXXXXXXVEVEASPPAARRPQHVVDLADFNTAARESDEVRAGRTRAQTRAINQQSVSGLVATLGP 592
[Close]
BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 9.480e-21
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPPLPLPAVQEAAEPGGRD 240
            +PFLKP YC+W RPSK LPK ESCFYVGPS +HPRD  R+LTR   + ETR VTWEA  + LPP   P   E AE  G +
Sbjct:   36 YPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTWEALPSQLPPPQPPLPIEVAEEEGEE 115
[Close]
BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.020e-20
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPPLPLPAVQEAAEPGGRD 240
            +PFLKP YC+W RPSK LPK ESCFYVGPS +HPRD  R+LTR   + ETR VTWEA  + LPP   P   E AE  G +
Sbjct:  303 YPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTWEALPSQLPPPQPPLPIEVAEEEGEE 382
[Close]
BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.070e-20
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVETRVVTWEAPATTLPPLPLPAVQEAAEPGGRD 240
            +PFLKP YC+W RPSK LPK ESCFYVGPS +HPRD  R+LTR   + ETR VTWEA  + LPP   P   E AE  G +
Sbjct:  653 YPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTWEALPSQLPPPQPPLPIEVAEEEGEE 732
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70374.14993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JB16_9PHAE1.750e-2734.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE1.400e-2633.98Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.460e-2633.98Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KDR1_9PHAE7.040e-2652.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3Y0_9PHAE4.710e-2454.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWE4_9PHAE2.570e-2160.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE4.080e-2135.17CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JV80_9PHAE9.480e-2160.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J594_9PHAE1.020e-2060.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE1.070e-2060.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70374contigH-paniculata_contig70374:19..696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size678
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930849.5218947-CDS-H-paniculata_contig70374:18..6961622930849.5218947-CDS-H-paniculata_contig70374:18..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70374 19..696 +
1691481480.1973412-CDS-H-paniculata_contig70374:18..6961691481480.1973412-CDS-H-paniculata_contig70374:18..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70374 19..696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70374.14993.1prot_H-paniculata_contig70374.14993.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig70374 19..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig70374.14993.1

>prot_H-paniculata_contig70374.14993.1 ID=prot_H-paniculata_contig70374.14993.1|Name=mRNA_H-paniculata_contig70374.14993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
HPFLKPGYCRWNRPSKDLPKAESCFYVGPSMNHPRDFLRMLTRGNKVVET
RVVTWEAPATTLPPLPLPAVQEAAEPGGRDDLTFSPPIPLPFLGRGIPHV
RHTGQSAVEEDDMDQGGDELPDQIDLRTSNDSTSSSDRSSSTAGSESISN
DAPSSESISSDINRNEASLSDQDIETPPAARTAAHQLGPHMSGLHDGEEI
REGRTRAQTREYHEENAEALFGMLGP
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mRNA from alignment at H-paniculata_contig70374:19..696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig70374.14993.1 ID=mRNA_H-paniculata_contig70374.14993.1|Name=mRNA_H-paniculata_contig70374.14993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at H-paniculata_contig70374:19..696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCCATTCCTAAAGCCGGGGTACTGTCGCTGGAACCGCCCGTCGAAGGA
TCTACCCAAGGCGGAGAGCTGCTTCTACGTCGGCCCGAGCATGAACCATC
CACGAGACTTCTTACGGATGCTCACGCGGGGAAACAAGGTGGTCGAGACG
AGGGTTGTCACCTGGGAGGCGCCAGCTACTACGTTACCACCATTGCCTTT
GCCTGCGGTACAGGAGGCGGCCGAGCCGGGAGGGCGGGATGATTTGACCT
TTTCCCCACCGATTCCACTGCCGTTCTTAGGTAGGGGGATTCCCCATGTT
CGACATACAGGGCAATCTGCGGTCGAAGAAGACGATATGGACCAGGGTGG
TGATGAGCTGCCGGACCAAATCGACTTGCGAACTTCAAACGACTCTACTT
CATCGTCAGACAGGTCATCATCAACGGCCGGCAGCGAGTCGATCAGCAAC
GACGCTCCATCTTCTGAGTCAATAAGTAGTGATATCAACAGAAACGAAGC
GTCACTCTCGGATCAAGATATTGAAACGCCTCCAGCTGCCCGGACTGCGG
CGCACCAGCTTGGACCGCACATGTCTGGACTGCATGACGGTGAAGAGATT
CGGGAGGGCAGAACCAGAGCGCAGACCAGGGAATACCACGAAGAGAATGC
AGAAGCTTTATTCGGTATGCTGGGGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig70374:19..696+

>mRNA_H-paniculata_contig70374.14993.1 ID=mRNA_H-paniculata_contig70374.14993.1|Name=mRNA_H-paniculata_contig70374.14993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig70374:19..696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCCATTCCTAAAGCCGGGGTACTGTCGCTGGAACCGCCCGTCGAAGGA
TCTACCCAAGGCGGAGAGCTGCTTCTACGTCGGCCCGAGCATGAACCATC
CACGAGACTTCTTACGGATGCTCACGCGGGGAAACAAGGTGGTCGAGACG
AGGGTTGTCACCTGGGAGGCGCCAGCTACTACGTTACCACCATTGCCTTT
GCCTGCGGTACAGGAGGCGGCCGAGCCGGGAGGGCGGGATGATTTGACCT
TTTCCCCACCGATTCCACTGCCGTTCTTAGGTAGGGGGATTCCCCATGTT
CGACATACAGGGCAATCTGCGGTCGAAGAAGACGATATGGACCAGGGTGG
TGATGAGCTGCCGGACCAAATCGACTTGCGAACTTCAAACGACTCTACTT
CATCGTCAGACAGGTCATCATCAACGGCCGGCAGCGAGTCGATCAGCAAC
GACGCTCCATCTTCTGAGTCAATAAGTAGTGATATCAACAGAAACGAAGC
GTCACTCTCGGATCAAGATATTGAAACGCCTCCAGCTGCCCGGACTGCGG
CGCACCAGCTTGGACCGCACATGTCTGGACTGCATGACGGTGAAGAGATT
CGGGAGGGCAGAACCAGAGCGCAGACCAGGGAATACCACGAAGAGAATGC
AGAAGCTTTATTCGGTATGCTGGGGCCCCACCCATTCCTAAAGCCGGGGT
ACTGTCGCTGGAACCGCCCGTCGAAGGATCTACCCAAGGCGGAGAGCTGC
TTCTACGTCGGCCCGAGCATGAACCATCCACGAGACTTCTTACGGATGCT
CACGCGGGGAAACAAGGTGGTCGAGACGAGGGTTGTCACCTGGGAGGCGC
CAGCTACTACGTTACCACCATTGCCTTTGCCTGCGGTACAGGAGGCGGCC
GAGCCGGGAGGGCGGGATGATTTGACCTTTTCCCCACCGATTCCACTGCC
GTTCTTAGGTAGGGGGATTCCCCATGTTCGACATACAGGGCAATCTGCGG
TCGAAGAAGACGATATGGACCAGGGTGGTGATGAGCTGCCGGACCAAATC
GACTTGCGAACTTCAAACGACTCTACTTCATCGTCAGACAGGTCATCATC
AACGGCCGGCAGCGAGTCGATCAGCAACGACGCTCCATCTTCTGAGTCAA
TAAGTAGTGATATCAACAGAAACGAAGCGTCACTCTCGGATCAAGATATT
GAAACGCCTCCAGCTGCCCGGACTGCGGCGCACCAGCTTGGACCGCACAT
GTCTGGACTGCATGACGGTGAAGAGATTCGGGAGGGCAGAACCAGAGCGC
AGACCAGGGAATACCACGAAGAGAATGCAGAAGCTTTATTCGGTATGCTG
GGGCCC
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