mRNA_H-paniculata_contig70189.14968.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS) HSP 1 Score: 55.5 bits (132), Expect = 1.260e-6 Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 82 NVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATL-EVSYLPELNFNLFSLHKI 330
N N WV DSGA++H+T DLS + L +P G + V + +G+ L I G L T P TL +V Y+P+L NL S++++
Sbjct: 111 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQLP---TLSKPLTLTDVLYVPDLKKNLISVYRL 190
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5N5J6G7_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5J6G7_9ROSI) HSP 1 Score: 55.5 bits (132), Expect = 1.310e-6 Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 1
Query: 49 VALTNQNPIVNNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHK 327
+A +N P W+SDSGASNH+T+DLS M D G+D V +GNG+ L I G +T S+T A + + P + NL S+++
Sbjct: 321 IASSNNQPTT-----WISDSGASNHITSDLSNM-DAHNEYHGKDHVDVGNGAGLTIANTGSSKITCGSSTF--ALKNILHCPSIAANLLSIYQ 405
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS) HSP 1 Score: 55.5 bits (132), Expect = 1.370e-6 Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 82 NVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATL-EVSYLPELNFNLFSLHKI 330
N N WV DSGA++H+T DLS + L +P G + V + +G+ L I G L T P TL +V Y+P+L NL S++++
Sbjct: 329 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQLP---TLSKPLTLTDVLYVPDLKKNLISVYRL 408
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5N5K0C6_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5K0C6_9ROSI) HSP 1 Score: 55.1 bits (131), Expect = 1.720e-6 Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query: 49 VALTNQNPIVNNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHK 327
+A +N P W+SDSGASNH+T+DLS M D G+D V +GNG+ L I G +T S+T A + P + NL S+++
Sbjct: 317 IASSNNQPTT-----WISDSGASNHITSDLSNM-DAHNEYHGKDHVAVGNGAGLTIANTGSSKITCGSSTF--ALKNTLHCPSIAANLLSIYQ 401
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA) HSP 1 Score: 54.3 bits (129), Expect = 2.100e-6 Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 94 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHK 327
W +DSGA+NH+TNDLS + +++P G + V + NGS L I +G +L +S T ++ ++P+++ NL S+ K
Sbjct: 64 WFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5N6NBX7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX7_9ASTR) HSP 1 Score: 54.7 bits (130), Expect = 2.580e-6 Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 79 NNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLE-VSYLPELNFNLFSLHKI 330
N+ W+ D+GASNH+TNDLS + L P G D +++GNGS+L I +G + + ++VP L+ V +P ++ N+ S+ ++
Sbjct: 631 NSTPAWLFDTGASNHVTNDLS-VLSLHNPYDGTDDLIIGNGSSLPITHIGSTTILI---SNVPVHLQHVLCVPLISRNIISISRL 711
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5N5GW54_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5GW54_9ROSA) HSP 1 Score: 53.9 bits (128), Expect = 4.740e-6 Identity = 33/81 (40.74%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 91 VWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLE-VSYLPELNFNLFSLHKI 330
+W++DSGA+NHMT DLS + L P + V NG L I +G ++ T P L V Y+P L+ NL S+HKI
Sbjct: 361 MWITDSGATNHMTADLSNL-SLASPYPTHETVQTANGEGLPISHIGS---SIIRTPMHPLKLNSVLYVPRLSSNLLSVHKI 437
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A8J5F994_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F994_ZINOF) HSP 1 Score: 53.5 bits (127), Expect = 6.410e-6 Identity = 34/105 (32.38%), Postives = 52/105 (49.52%), Query Frame = 1
Query: 16 DDTEDEECGLPVALTNQNPIVNNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHKI 330
D D G+ +A I + +VWV DSGA++HM+N L+ +YD P + +V + NG + GK+ L + EV Y+P F L S+HK+
Sbjct: 353 DANSDTNEGIQIAFLTAFEINSLHDVWVIDSGATDHMSNKLTHVYDFH-PFSKPSLVSVANGKGAHVQGKGKIKLVSDTIES-----EVLYVPSFPFQLLSVHKL 451
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5J4ZT39_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZT39_9ASTE) HSP 1 Score: 52.8 bits (125), Expect = 6.490e-6 Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 79 NNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTT 258
N NVW+ DSGA+NH+TNDLS + + GED+V +GNG L+I G LT + T
Sbjct: 26 NTSNVWLPDSGATNHLTNDLSSLTTT-EDYMGEDLVAIGNGKGLLISHNGSSKLTTPAHT 84
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU) HSP 1 Score: 52.8 bits (125), Expect = 7.740e-6 Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 88 NVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHK 327
N+W++DSGASNH+T ++S + P G + + +G+G++L I G LH++ L V + P++ NL S+HK
Sbjct: 23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHK 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig70189.14968.1 >prot_H-paniculata_contig70189.14968.1 ID=prot_H-paniculata_contig70189.14968.1|Name=mRNA_H-paniculata_contig70189.14968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp DVDKLDDTEDEECGLPVALTNQNPIVNNVNVWVSDSGASNHMTNDLSKMYback to top mRNA from alignment at H-paniculata_contig70189:24..353- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig70189.14968.1 ID=mRNA_H-paniculata_contig70189.14968.1|Name=mRNA_H-paniculata_contig70189.14968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig70189:24..353- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig70189:24..353- >mRNA_H-paniculata_contig70189.14968.1 ID=mRNA_H-paniculata_contig70189.14968.1|Name=mRNA_H-paniculata_contig70189.14968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig70189:24..353- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |