mRNA_H-paniculata_contig70189.14968.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig70189.14968.1
Unique NamemRNA_H-paniculata_contig70189.14968.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS)

HSP 1 Score: 55.5 bits (132), Expect = 1.260e-6
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   82 NVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATL-EVSYLPELNFNLFSLHKI 330
            N N WV DSGA++H+T DLS +  L +P  G + V + +G+ L I   G   L    T   P TL +V Y+P+L  NL S++++
Sbjct:  111 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQLP---TLSKPLTLTDVLYVPDLKKNLISVYRL 190          
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5N5J6G7_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5J6G7_9ROSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-6
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   49 VALTNQNPIVNNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHK 327
            +A +N  P       W+SDSGASNH+T+DLS M D      G+D V +GNG+ L I   G   +T  S+T   A   + + P +  NL S+++
Sbjct:  321 IASSNNQPTT-----WISDSGASNHITSDLSNM-DAHNEYHGKDHVDVGNGAGLTIANTGSSKITCGSSTF--ALKNILHCPSIAANLLSIYQ 405          
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS)

HSP 1 Score: 55.5 bits (132), Expect = 1.370e-6
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   82 NVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATL-EVSYLPELNFNLFSLHKI 330
            N N WV DSGA++H+T DLS +  L +P  G + V + +G+ L I   G   L    T   P TL +V Y+P+L  NL S++++
Sbjct:  329 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQLP---TLSKPLTLTDVLYVPDLKKNLISVYRL 408          
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5N5K0C6_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5K0C6_9ROSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.720e-6
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   49 VALTNQNPIVNNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHK 327
            +A +N  P       W+SDSGASNH+T+DLS M D      G+D V +GNG+ L I   G   +T  S+T   A     + P +  NL S+++
Sbjct:  317 IASSNNQPTT-----WISDSGASNHITSDLSNM-DAHNEYHGKDHVAVGNGAGLTIANTGSSKITCGSSTF--ALKNTLHCPSIAANLLSIYQ 401          
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA)

HSP 1 Score: 54.3 bits (129), Expect = 2.100e-6
Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   94 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHK 327
            W +DSGA+NH+TNDLS +  +++P  G + V + NGS L I  +G  +L  +S T      ++ ++P+++ NL S+ K
Sbjct:   64 WFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138          
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5N6NBX7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX7_9ASTR)

HSP 1 Score: 54.7 bits (130), Expect = 2.580e-6
Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   79 NNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLE-VSYLPELNFNLFSLHKI 330
            N+   W+ D+GASNH+TNDLS +  L  P  G D +++GNGS+L I  +G   + +   ++VP  L+ V  +P ++ N+ S+ ++
Sbjct:  631 NSTPAWLFDTGASNHVTNDLS-VLSLHNPYDGTDDLIIGNGSSLPITHIGSTTILI---SNVPVHLQHVLCVPLISRNIISISRL 711          
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5N5GW54_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5GW54_9ROSA)

HSP 1 Score: 53.9 bits (128), Expect = 4.740e-6
Identity = 33/81 (40.74%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   91 VWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLE-VSYLPELNFNLFSLHKI 330
            +W++DSGA+NHMT DLS +  L  P    + V   NG  L I  +G    ++  T   P  L  V Y+P L+ NL S+HKI
Sbjct:  361 MWITDSGATNHMTADLSNL-SLASPYPTHETVQTANGEGLPISHIGS---SIIRTPMHPLKLNSVLYVPRLSSNLLSVHKI 437          
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A8J5F994_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F994_ZINOF)

HSP 1 Score: 53.5 bits (127), Expect = 6.410e-6
Identity = 34/105 (32.38%), Postives = 52/105 (49.52%), Query Frame = 1
Query:   16 DDTEDEECGLPVALTNQNPIVNNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHKI 330
            D   D   G+ +A      I +  +VWV DSGA++HM+N L+ +YD   P +   +V + NG    +   GK+ L   +        EV Y+P   F L S+HK+
Sbjct:  353 DANSDTNEGIQIAFLTAFEINSLHDVWVIDSGATDHMSNKLTHVYDFH-PFSKPSLVSVANGKGAHVQGKGKIKLVSDTIES-----EVLYVPSFPFQLLSVHKL 451          
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5J4ZT39_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZT39_9ASTE)

HSP 1 Score: 52.8 bits (125), Expect = 6.490e-6
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   79 NNVNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTT 258
            N  NVW+ DSGA+NH+TNDLS +    +   GED+V +GNG  L+I   G   LT  + T
Sbjct:   26 NTSNVWLPDSGATNHLTNDLSSLTTT-EDYMGEDLVAIGNGKGLLISHNGSSKLTTPAHT 84          
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU)

HSP 1 Score: 52.8 bits (125), Expect = 7.740e-6
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   88 NVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPELNFNLFSLHK 327
            N+W++DSGASNH+T ++S +     P  G + + +G+G++L I   G     LH++      L V + P++  NL S+HK
Sbjct:   23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHK 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70189.14968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2JUM8_9BRAS1.260e-639.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5J6G7_9ROSI1.310e-637.63Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A6D2KMT9_9BRAS1.370e-639.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5K0C6_9ROSI1.720e-637.63Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A834W4R7_9FABA2.100e-637.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6NBX7_9ASTR2.580e-636.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5GW54_9ROSA4.740e-640.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5F994_ZINOF6.410e-632.38Uncharacterized protein n=3 Tax=Zingiber officinal... [more]
A0A5J4ZT39_9ASTE6.490e-646.67Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A5E4GCQ9_PRUDU7.740e-635.00PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70189contigH-paniculata_contig70189:24..353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.090584-CDS-H-paniculata_contig70189:23..3531622930846.090584-CDS-H-paniculata_contig70189:23..353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70189 24..353 -
1691481478.806489-CDS-H-paniculata_contig70189:23..3531691481478.806489-CDS-H-paniculata_contig70189:23..353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70189 24..353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70189.14968.1prot_H-paniculata_contig70189.14968.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig70189 24..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig70189.14968.1

>prot_H-paniculata_contig70189.14968.1 ID=prot_H-paniculata_contig70189.14968.1|Name=mRNA_H-paniculata_contig70189.14968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
DVDKLDDTEDEECGLPVALTNQNPIVNNVNVWVSDSGASNHMTNDLSKMY
DLRKPVAGEDVVMLGNGSTLVIDLVGKLDLTLHSTTDVPATLEVSYLPEL
NFNLFSLHKI
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mRNA from alignment at H-paniculata_contig70189:24..353-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig70189.14968.1 ID=mRNA_H-paniculata_contig70189.14968.1|Name=mRNA_H-paniculata_contig70189.14968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig70189:24..353- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGTTGACAAGTTGGATGATACAGAGGATGAAGAGTGTGGTTTGCCTGT AGCTTTGACGAATCAAAATCCAATTGTTAACAATGTCAATGTGTGGGTGT CTGATTCTGGTGCAAGTAACCACATGACGAACGATCTTTCAAAAATGTAT GACCTTCGCAAACCGGTGGCAGGCGAAGATGTGGTGATGTTGGGGAATGG ATCGACTCTGGTGATAGATTTGGTGGGAAAGTTGGATTTGACTCTTCATT CCACTACCGATGTGCCTGCCACACTTGAAGTATCATACTTACCGGAGTTG AACTTCAACCTTTTTTCCCTCCACAAAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig70189:24..353-

>mRNA_H-paniculata_contig70189.14968.1 ID=mRNA_H-paniculata_contig70189.14968.1|Name=mRNA_H-paniculata_contig70189.14968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig70189:24..353- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGTTGACAAGTTGGATGATACAGAGGATGAAGAGTGTGGTTTGCCTGT
AGCTTTGACGAATCAAAATCCAATTGTTAACAATGTCAATGTGTGGGTGT
CTGATTCTGGTGCAAGTAACCACATGACGAACGATCTTTCAAAAATGTAT
GACCTTCGCAAACCGGTGGCAGGCGAAGATGTGGTGATGTTGGGGAATGG
ATCGACTCTGGTGATAGATTTGGTGGGAAAGTTGGATTTGACTCTTCATT
CCACTACCGATGTGCCTGCCACACTTGAAGTATCATACTTACCGGAGTTG
AACTTCAACCTTTTTTCCCTCCACAAAATCGATGTTGACAAGTTGGATGA
TACAGAGGATGAAGAGTGTGGTTTGCCTGTAGCTTTGACGAATCAAAATC
CAATTGTTAACAATGTCAATGTGTGGGTGTCTGATTCTGGTGCAAGTAAC
CACATGACGAACGATCTTTCAAAAATGTATGACCTTCGCAAACCGGTGGC
AGGCGAAGATGTGGTGATGTTGGGGAATGGATCGACTCTGGTGATAGATT
TGGTGGGAAAGTTGGATTTGACTCTTCATTCCACTACCGATGTGCCTGCC
ACACTTGAAGTATCATACTTACCGGAGTTGAACTTCAACCTTTTTTCCCT
CCACAAAATC
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