mRNA_H-paniculata_contig70141.14964.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig70141.14964.1
Unique NamemRNA_H-paniculata_contig70141.14964.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70141.14964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70141contigH-paniculata_contig70141:305..673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size370
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.475039-CDS-H-paniculata_contig70141:304..6731622930845.475039-CDS-H-paniculata_contig70141:304..673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70141 305..673 +
1691481478.5405595-CDS-H-paniculata_contig70141:304..6731691481478.5405595-CDS-H-paniculata_contig70141:304..673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70141 305..673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70141.14964.1prot_H-paniculata_contig70141.14964.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig70141 305..673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig70141.14964.1

>prot_H-paniculata_contig70141.14964.1 ID=prot_H-paniculata_contig70141.14964.1|Name=mRNA_H-paniculata_contig70141.14964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
YSPLLTAQFVLPGKCRILERSVLSDFDVHENVNFSGVGMGNDVQDRGNID
GVEINETETKTGISNVLYKNCFSSTVDLIDVEKLDDTEDGECGLPVALTN
QNPTINNVNVWVSDSGASNHMTN
back to top

mRNA from alignment at H-paniculata_contig70141:305..673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig70141.14964.1 ID=mRNA_H-paniculata_contig70141.14964.1|Name=mRNA_H-paniculata_contig70141.14964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig70141:305..673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTCACCCCTCCTTACAGCACAATTTGTGCTTCCAGGCAAGTGTCGTAT
TTTGGAAAGGTCTGTACTGTCTGATTTTGATGTTCATGAGAATGTTAATT
TTTCTGGTGTTGGGATGGGTAACGATGTGCAAGACCGTGGTAATATTGAT
GGAGTAGAGATCAATGAGACTGAGACTAAGACTGGTATCTCGAATGTTCT
GTACAAGAATTGTTTTTCGAGCACTGTCGACTTGATTGATGTTGAGAAGT
TGGATGATACAGAGGATGGAGAGTGCGGTTTGCCTGTAGCTTTGACAAAT
CAAAATCCAACTATTAACAATGTCAATGTGTGGGTGTCTGATTCTGGTGC
AAGTAACCACATGACGAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig70141:305..673+

>mRNA_H-paniculata_contig70141.14964.1 ID=mRNA_H-paniculata_contig70141.14964.1|Name=mRNA_H-paniculata_contig70141.14964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig70141:305..673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTCACCCCTCCTTACAGCACAATTTGTGCTTCCAGGCAAGTGTCGTAT
TTTGGAAAGGTCTGTACTGTCTGATTTTGATGTTCATGAGAATGTTAATT
TTTCTGGTGTTGGGATGGGTAACGATGTGCAAGACCGTGGTAATATTGAT
GGAGTAGAGATCAATGAGACTGAGACTAAGACTGGTATCTCGAATGTTCT
GTACAAGAATTGTTTTTCGAGCACTGTCGACTTGATTGATGTTGAGAAGT
TGGATGATACAGAGGATGGAGAGTGCGGTTTGCCTGTAGCTTTGACAAAT
CAAAATCCAACTATTAACAATGTCAATGTGTGGGTGTCTGATTCTGGTGC
AAGTAACCACATGACGAACTACTCACCCCTCCTTACAGCACAATTTGTGC
TTCCAGGCAAGTGTCGTATTTTGGAAAGGTCTGTACTGTCTGATTTTGAT
GTTCATGAGAATGTTAATTTTTCTGGTGTTGGGATGGGTAACGATGTGCA
AGACCGTGGTAATATTGATGGAGTAGAGATCAATGAGACTGAGACTAAGA
CTGGTATCTCGAATGTTCTGTACAAGAATTGTTTTTCGAGCACTGTCGAC
TTGATTGATGTTGAGAAGTTGGATGATACAGAGGATGGAGAGTGCGGTTT
GCCTGTAGCTTTGACAAATCAAAATCCAACTATTAACAATGTCAATGTGT
GGGTGTCTGATTCTGGTGCAAGTAACCACATGACGAAC
back to top