mRNA_H-paniculata_contig70023.14956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig70023.14956.1
Unique NamemRNA_H-paniculata_contig70023.14956.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: A0A7S1T3E5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3E5_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 8.960e-10
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDE 129
            RRKLDD+ W GVF+GY  +SP++ VY+P  +    SRNV FDE
Sbjct:   49 RRKLDDRAWKGVFVGYASESPAWLVYNPVTRRAVSSRNVVFDE 91          
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: UPI001262AFBF (uncharacterized protein LOC116108432 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001262AFBF)

HSP 1 Score: 55.5 bits (132), Expect = 1.090e-7
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDE 129
            R KLDDKV VG+F+GY   S  Y VY PE+K + ++ +V+ DE
Sbjct:  123 RTKLDDKVEVGIFIGYSSQSKGYKVYIPESKKIVITTDVKMDE 165          
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: A0A2Z7BBB7_9LAMI (Integrase catalytic domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BBB7_9LAMI)

HSP 1 Score: 51.6 bits (122), Expect = 3.320e-6
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDEE 132
            R KLDD+    VF+GY+E+S  Y ++SP+++ + +SR+V FDE+
Sbjct:   97 RSKLDDRSRKLVFIGYNENSKGYKLFSPDSRRIVISRDVEFDED 140          
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: A0A2Z7B3E6_9LAMI (Integrase catalytic domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B3E6_9LAMI)

HSP 1 Score: 51.6 bits (122), Expect = 3.320e-6
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDEE 132
            R KLDD+    VF+GY+E+S  Y ++SP+++ + +SR+V FDE+
Sbjct:  272 RSKLDDRSRKLVFIGYNENSKGYKLFSPDSRRIVISRDVEFDED 315          
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: A0A7D9JUR0_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JUR0_PARCT)

HSP 1 Score: 48.5 bits (114), Expect = 8.600e-6
Identity = 17/48 (35.42%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    1 RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDEEDFVR 144
            ++K D K    +F+GY   S  Y +Y P+ + + +SR+V FDE++F++
Sbjct:   23 KKKWDSKTKKCIFVGYSISSKGYRLYDPKTRKLHISRDVLFDEDEFIQ 70          
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: A0A371GDZ4_MUCPR (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371GDZ4_MUCPR)

HSP 1 Score: 50.1 bits (118), Expect = 1.070e-5
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    1 RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDEE 132
            RRKL+DK    + LG  E+S +Y +Y P NK +Q+S++V+F E+
Sbjct:  166 RRKLNDKSTKYLLLGVSEESKAYKLYDPINKKIQISKDVKFQED 209          
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: A0A7S1SL50_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SL50_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 1.590e-5
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    1 RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDEE 132
            RRKL +K + GV +GY  D+P Y VY+PE + +  S +V F E+
Sbjct:  299 RRKLSEKAFRGVMVGYPPDAPGYRVYNPETRRITTSVHVVFQED 342          
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: A0A6S7GU92_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GU92_PARCT)

HSP 1 Score: 49.7 bits (117), Expect = 1.590e-5
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    1 RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDEEDFVR 144
            R+K D K    +F+GY   S  Y +Y P+ + + +SR+V FDE++F++
Sbjct:  173 RKKWDSKTKKCIFVGYSISSKGYRLYDPKTRKLHISRDVLFDEDEFIQ 220          
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: A0A146KTS1_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A146KTS1_LYGHE)

HSP 1 Score: 48.9 bits (115), Expect = 3.010e-5
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 1
Query:    7 KLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDEEDFVRG 147
            K DD+  V  F+GY ++   Y +Y P+ K +  SR+VRFDE D+V G
Sbjct:  669 KFDDRAVVARFVGYQDNG--YRLYCPKTKKIFTSRDVRFDENDYVFG 713          
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Match: A0A6S7GKR1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GKR1_PARCT)

HSP 1 Score: 48.5 bits (114), Expect = 4.080e-5
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    1 RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDEEDFVR 144
            R+K D K    +F+GY   S  Y  Y P+ +++ +SR+V FDE++F++
Sbjct:   77 RKKWDSKTKKCIFVGYSISSKGYRRYDPKTRTLHISRDVLFDEDEFIQ 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70023.14956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7S1T3E5_9CHLO8.960e-1055.81Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
UPI001262AFBF1.090e-751.16uncharacterized protein LOC116108432 n=1 Tax=Pista... [more]
A0A2Z7BBB7_9LAMI3.320e-645.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z7B3E6_9LAMI3.320e-645.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9JUR0_PARCT8.600e-635.42Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A371GDZ4_MUCPR1.070e-545.45gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A7S1SL50_9CHLO1.590e-545.45Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A6S7GU92_PARCT1.590e-537.50Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A146KTS1_LYGHE3.010e-544.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7GKR1_PARCT4.080e-537.50Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70023contigH-paniculata_contig70023:70..228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.3050377-CDS-H-paniculata_contig70023:69..2281622930844.3050377-CDS-H-paniculata_contig70023:69..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70023 70..228 +
1691481478.041501-CDS-H-paniculata_contig70023:69..2281691481478.041501-CDS-H-paniculata_contig70023:69..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70023 70..228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70023.14956.1prot_H-paniculata_contig70023.14956.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig70023 70..228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig70023.14956.1

>prot_H-paniculata_contig70023.14956.1 ID=prot_H-paniculata_contig70023.14956.1|Name=mRNA_H-paniculata_contig70023.14956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
RRKLDDKVWVGVFLGYDEDSPSYSVYSPENKSVQLSRNVRFDEEDFVRGH
RG*
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mRNA from alignment at H-paniculata_contig70023:70..228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig70023.14956.1 ID=mRNA_H-paniculata_contig70023.14956.1|Name=mRNA_H-paniculata_contig70023.14956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig70023:70..228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACGTAAGCTCGACGACAAAGTATGGGTGGGGGTGTTTCTGGGGTACGA CGAGGACAGCCCGAGTTATAGCGTATATAGCCCGGAAAACAAGAGCGTCC AGTTGAGCAGGAACGTGAGATTTGACGAAGAGGACTTCGTAAGGGGCCAT CGTGGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig70023:70..228+

>mRNA_H-paniculata_contig70023.14956.1 ID=mRNA_H-paniculata_contig70023.14956.1|Name=mRNA_H-paniculata_contig70023.14956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig70023:70..228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACGTAAGCTCGACGACAAAGTATGGGTGGGGGTGTTTCTGGGGTACGA
CGAGGACAGCCCGAGTTATAGCGTATATAGCCCGGAAAACAAGAGCGTCC
AGTTGAGCAGGAACGTGAGATTTGACGAAGAGGACTTCGTAAGGGGCCAT
CGTGGATAGAGACGTAAGCTCGACGACAAAGTATGGGTGGGGGTGTTTCT
GGGGTACGACGAGGACAGCCCGAGTTATAGCGTATATAGCCCGGAAAACA
AGAGCGTCCAGTTGAGCAGGAACGTGAGATTTGACGAAGAGGACTTCGTA
AGGGGCCATCGTGGATAG
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