mRNA_H-paniculata_contig7.14945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7.14945.1
Unique NamemRNA_H-paniculata_contig7.14945.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7.14945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7contigH-paniculata_contig7:949..4750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size601
Cds size600
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930842.2986844-CDS-H-paniculata_contig7:948..14731622930842.2986844-CDS-H-paniculata_contig7:948..1473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7 949..1473 +
1691481476.9468055-CDS-H-paniculata_contig7:948..14731691481476.9468055-CDS-H-paniculata_contig7:948..1473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7 949..1473 +
1622930842.314057-CDS-H-paniculata_contig7:4675..47501622930842.314057-CDS-H-paniculata_contig7:4675..4750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7 4676..4750 +
1691481476.9582536-CDS-H-paniculata_contig7:4675..47501691481476.9582536-CDS-H-paniculata_contig7:4675..4750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7 4676..4750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7.14945.1prot_H-paniculata_contig7.14945.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7 949..4750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7.14945.1

>prot_H-paniculata_contig7.14945.1 ID=prot_H-paniculata_contig7.14945.1|Name=mRNA_H-paniculata_contig7.14945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
RNLAHSTERRNALAEDDDQEDDQEPLETANRLYEEDELSDNDDGERCEHG
NVLPAENPARHTPSVLAAELKGIPEQHALTQKEISHSAVAYRTEHKEHGE
VIAVATPPIRMPRQGQLVSHLSTGNQQAASKQIATSSATTINVREEKDGV
QERRLLGETVGDRMLHIASVNGQEKRGPVCQDLEEGIFDAAGESPTTSR*
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mRNA from alignment at H-paniculata_contig7:949..4750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7.14945.1 ID=mRNA_H-paniculata_contig7.14945.1|Name=mRNA_H-paniculata_contig7.14945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3802bp|location=Sequence derived from alignment at H-paniculata_contig7:949..4750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAATCTCGCGCATTCAACCGAACGTCGCAATGCGCTTGCTGAAGATGA
TGATCAGGAAGACGATCAAGAACCCCTTGAAACTGCGAACCGCTTATACG
AGGAGGATGAACTTAGCGACAACGACGATGGTGAAAGGTGTGAGCATGGG
AATGTCTTGCCTGCTGAAAATCCAGCAAGACACACGCCGTCGGTGCTCGC
GGCCGAACTGAAGGGAATACCTGAGCAGCATGCGCTCACGCAGAAGGAAA
TCAGTCATTCAGCGGTTGCCTACCGGACAGAGCACAAGGAGCACGGCGAA
GTTATCGCGGTTGCTACGCCTCCGATTCGGATGCCACGTCAAGGCCAGCT
AGTTTCTCACTTGTCCACTGGAAACCAGCAAGCTGCCTCGAAGCAGATTG
CGACTTCTTCAGCAACCACGATCAATGTACGCGAGGAGAAGGATGGAGTG
CAAGAACGACGTCTGTTGGGAGAAACAGTGGGGGACAGGATGCTTCACAT
TGCCTCCGTCAATGGCCAGGAAAAGGTGACATGTCTCGTGGAATAACTGT
ATGTTATGTCGTCGAGTAGTGTATATTGACGTCCTCATACGCACTGGGAA
ATTTGTGCTGTCCGGACTGTTTATGTATCACATGAACGCCTTCTTGCACA
CTTACTGCGCACTTGAAGGCAGGTTCAGCGGTTTAAACAACATGACTGGA
ACTGTCATTACAGCACCCGGCGCGCGTCTAAACGCTCTGTCCGCAGCGGC
ATCTTGTAGACCCTTCGACTCCTTGGGGCTTGCAGTGTGACACTTTAAGA
CGCGTGTCTCACAGTCCCGTGTCCCAATATGATGTGGGGGGGTGCATTTT
GAGGGGGGGGATGGGGTACTGATATGGGATGGACGAAATCTGTTTCAGGG
GGGATTGACATGGTATCAGTTTACCACGAGATGAATATAAAAGTGGGATG
TAAATGAGAAACATGCCATGAACTGAATAATGCCGAGGGACGCTAGGAGC
GAAGGGGTCAAAGTGACCATTTTCATTTAACCATTACACATCCACAGCAA
GTTTTCTGCTGCTACAATGCCATGTGTTTGACACCTGATATAGAGGTAGT
ACAGCTGTCAGACTGCAGTACACGTTTTGGTTCCAGTGAGCGGTTGGAGC
CAGCTGAACAGCACCAACAGCATGGTATAGTAATATAGTTGCCCACGGTC
ACGAAATATATAGGCGATAAAGTGGATTTACTACTGCAGCATTCAACGTC
ATATCTTATCTATCTGCCCGGTGATACTGGGGTATAACAGTAACATAATG
AACAGAGGGAGAGAGGTTGGTAGGCAACAGCATCTCCCGAGAGTTCCCTA
GCGAGCGATGGCGACTGCGTGTATGGCGTCCTGTTTCGCGTAACGGTACC
CTCAGATGTAGCAGCTGGCAACCCGCCACAGTCGTGGCAACGGAATATGA
CAGCACAAATGATGATGTGATTGACAACTTGGCGCTGGGTTTCCTAAAGA
CGAGCTGTTCCTTCTGTCAACTTGTTTTCATTTTTTTATAGGAGTCAAAG
GGTGAAGCCCGGTCACAATGTCCCTACTGAGTTATTAGTACTGGCAACAG
TCGTGGTAAAATGGTCCCACACATGGAACGCAGATTAATGACAGATGGGG
AGAATTGAACCCTTGGGTGTTGTCAGGGGTGGTTAGGTTACGGTAATTTA
TTCTGGGCATAAGATGTTTGTTCTTCACCATTACTTTCTGCTGCGAAGAC
TACATGAAAGCAGCAAAGTGACGTAACCAGCAGACACAGGTTCTAGCTTG
GCAGGTACTATACCGGCTTGAGCACTGACTTGTACGATCTTCGTGATATG
TTCCTATTGGTCTGGCAACAATCCGCTATAGTTAGGATCGCAACAAAATG
GTGTAAAGAATGATATTGAGGTGCATTATTTTCCGCTGTCAAAGCATATC
TTGTGAACAACACCAACTTCGTTTGCGTGGCACTAGTGGTAACAGTTTTA
CCGGCACGAAGAATCGTGCGAAGGGTGTGTATTCAGATTCACATACGATT
CTCTGTGTCCATTTTCGTCAGTCAATGACAGTGACCATACAACCCGATAT
GACCACGTTACCCGCGACATAACAGGATTTTCCAAATGCGTTTGTGTGTA
TTTTGATTGCTGGTTTGGAAATATGGGCGTCCTTTGTCTGGCTTTAGAAA
ACGATTGAAGCATTCAGATTTACCCCCTCGCTGATGAGGCTGTAGAGCTC
ATTGCGTCAGGGTAGACCTGACCAAAACTGCTGAGAGCCGGAATTTTCAC
TTCTTCGCTGACACTGGTGAGTACCTCTCCGAGCGCATCGTTTACAGCGT
GTATGGAGATGCCGTTTTATTCCACACGTCGTGTGATAACGTACGTCACA
ACACTTACATTGATAGTGGTGGACAGGTCACGGCTATGTTAATGAAGGCG
ACTACGTCGATATTGTCGTGGTACCTCTAAATAGCCGACGCACACGGAGT
CGCTACGCTTGCCGTGGCTTGCTTACACTTACTCCCGTGTAGAAACACTT
CAGCAACGAATTTGCAAAGTTCGAAACGTGTCCCGTGAGAGGTATCCTGT
GACAGCGGCAATGAGGCGGACAACAATTAACTTCATATACAGACCCACTA
CTGTACTGTTGTAGACTCTCAGAGATAACTATAATGGGAGGTGCGGATGC
GGGAAATTTGAAGCTCGCAACTGTACTGCCCGGTAGGCTATATGCACCAA
CAGTTTTTAGAAGTTCAGTTGTTCAGGTTCACGACTTTCAACCCCTTCTC
TTTCTACCCTCTTCAACACAAGACTGCCTCTCACAATGCTCCACTCCAGT
ATGTATGCTGTGTACGGATGACGACAGTCTATATGACGGCCTACACGATA
AGTGCACAGTGTGTAAACACAGAATTGGAAAAACGTTTGCTAGCAATTGC
GTTGTTCAGGTTGACGTCTTGCCCAATCTTCTCTTTACACCCTCTCCAAT
GCCAGACAACATCTCCCTCAGTCTGCCCTGGGTACCCCGACATATAAACG
CGCCGTCCCTGCTCCCGTGTGTATGCTGCATGCGAAGGACAGCCTCTATG
ACAGTCGTCATGATAAAAAGAGTGCAAGACAAAATTGGAAAAACGGTTAC
CGGAGTATCTGCTAAACGTTTCTCCGACGGAGAAATACTCTCTCTGTCCC
ATTCTCTCTTGCTCTTGGTACAAAGATGTGTCCTCATTGGCGTACGTCTC
TGTTGCGTCGCTAATGACTTGCTCTGCCGTCTAGCCACGGGTACCTTTTG
TTCCTGTGTGCAGTCTCTCTCTTTTGTCTTTTGGACTGGGCATGATGGCC
ATGTAGAGCTGACCGTCTGAAGTTTGTTTGTTTTTTCTTCACGTCCTTGA
GCTAGGAGTACTTTTTACGACTTCTTAAATATGGAAATTGTAGTTCAGAT
TCCGCACTATGGAATTACTTGAGTTGAAAATCGAACATATTTCCGAAACG
ACCATCACCTTAGCCTATTATATCGAGCCTCTAAAAGGATATGCTTAGAC
ATGTTACAATAAACGCATTTTGTCCCTGGCGTAATGAAGGCACCTGGAGG
CGACTAGGTTTGCTCCTACGCCAAGGCGCCTTAAGCCGTCCATTTACTAT
ATATGAAATCCGGTGACACATTCTCACGACGTTTGAGTGATGATGCATTT
GCCGCCTTTCCGATGATGCTCGAGCAGCGGGGTCCAGTCTGTCAAGATCT
TGAAGAGGGTATTTTTGACGCTGCTGGGGAGTCGCCAACCACGAGCAGGT
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig7:949..4750+

>mRNA_H-paniculata_contig7.14945.1 ID=mRNA_H-paniculata_contig7.14945.1|Name=mRNA_H-paniculata_contig7.14945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig7:949..4750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAATCTCGCGCATTCAACCGAACGTCGCAATGCGCTTGCTGAAGATGA
TGATCAGGAAGACGATCAAGAACCCCTTGAAACTGCGAACCGCTTATACG
AGGAGGATGAACTTAGCGACAACGACGATGGTGAAAGGTGTGAGCATGGG
AATGTCTTGCCTGCTGAAAATCCAGCAAGACACACGCCGTCGGTGCTCGC
GGCCGAACTGAAGGGAATACCTGAGCAGCATGCGCTCACGCAGAAGGAAA
TCAGTCATTCAGCGGTTGCCTACCGGACAGAGCACAAGGAGCACGGCGAA
GTTATCGCGGTTGCTACGCCTCCGATTCGGATGCCACGTCAAGGCCAGCT
AGTTTCTCACTTGTCCACTGGAAACCAGCAAGCTGCCTCGAAGCAGATTG
CGACTTCTTCAGCAACCACGATCAATGTACGCGAGGAGAAGGATGGAGTG
CAAGAACGACGTCTGTTGGGAGAAACAGTGGGGGACAGGATGCTTCACAT
TGCCTCCGTCAATGGCCAGGAAAAGCGAAATCTCGCGCATTCAACCGAAC
GTCGCAATGCGCTTGCTGAAGATGATGATCAGGAAGACGATCAAGAACCC
CTTGAAACTGCGAACCGCTTATACGAGGAGGATGAACTTAGCGACAACGA
CGATGGTGAAAGGTGTGAGCATGGGAATGTCTTGCCTGCTGAAAATCCAG
CAAGACACACGCCGTCGGTGCTCGCGGCCGAACTGAAGGGAATACCTGAG
CAGCATGCGCTCACGCAGAAGGAAATCAGTCATTCAGCGGTTGCCTACCG
GACAGAGCACAAGGAGCACGGCGAAGTTATCGCGGTTGCTACGCCTCCGA
TTCGGATGCCACGTCAAGGCCAGCTAGTTTCTCACTTGTCCACTGGAAAC
CAGCAAGCTGCCTCGAAGCAGATTGCGACTTCTTCAGCAACCACGATCAA
TGTACGCGAGGAGAAGGATGGAGTGCAAGAACGACGTCTGTTGGGAGAAA
CAGTGGGGGACAGGATGCTTCACATTGCCTCCGTCAATGGCCAGGAAAAG
CGGGGTCCAGTCTGTCAAGATCTTGAAGAGGGTATTTTTGACGCTGCTGG
GGAGTCGCCAACCACGAGCAGGTGACGGGGTCCAGTCTGTCAAGATCTTG
AAGAGGGTATTTTTGACGCTGCTGGGGAGTCGCCAACCACGAGCAGGTGA
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