mRNA_H-paniculata_contig6967.14906.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6967.14906.1
Unique NamemRNA_H-paniculata_contig6967.14906.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: D7G1N0_ECTSI (Triose phosphate/phosphate translocator, non-green plastid, chloroplast (CTPT), C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N0_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 1.020e-124
Identity = 198/246 (80.49%), Postives = 222/246 (90.24%), Query Frame = 3 
Query:    3 LLPIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGATAREGYDAVEDKATLVKTLLGCGLAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAKNNAAAAKKAKTA 740
            LLPI+ LHAGGHLAAVLSMSAGAVSFTHIIKASEPVA+T+I P FGVE+QPMTVN+FLLPIVGGVAYAAMKPGQGLD+SQL  LAS YAM SN+FFAIRG+LSK+VMT EYK  KNM ASNTY VLTI+S+++LVLP L+FEG  +++ +D V+DKATL+KTLLGCG++YYLYNEMGFRVLNRLDPVS+AVGNTVKRVVIMGA V+FLGEEMN NK IGA IAVAGTLAYSLAKN AAAAKK K A
Sbjct:   80 LLPISILHAGGHLAAVLSMSAGAVSFTHIIKASEPVASTVIGPFFGVEVQPMTVNMFLLPIVGGVAYAAMKPGQGLDMSQLTNLASGYAMASNIFFAIRGILSKQVMTPEYKETKNMSASNTYGVLTIMSSVILVLPMLFFEGLASKDAFDDVKDKATLLKTLLGCGISYYLYNEMGFRVLNRLDPVSSAVGNTVKRVVIMGAAVLFLGEEMNANKLIGACIAVAGTLAYSLAKNYAAAAKKTKAA 325
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BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: A0A7S3ZMF2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMF2_9STRA)

HSP 1 Score: 220 bits (560), Expect = 8.860e-62
Identity = 119/237 (50.21%), Postives = 159/237 (67.09%), Query Frame = 3 
Query:    6 LPIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGATAREGYDAVEDKATLVKTLLGCGLAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAKNNAA 716
            LPIAALH GGH   V SM AG+V FTH+IKA+EPV   ++   F  ++ P  VN  L PIVGGV YA +KPG    +  L+G AS  A+ S V F+I  +L+K +MT E K   N+  +N YAVLT+ S ++L+LP+   EG  A     A+ + A  ++ L+GCG  YY YNEMGFRVL+ L PVSAAV N++KRV ++ A V+FLGE++++ K IG+S+A+AG L YSLAK  AA
Sbjct:  139 LPIAALHCGGHGLQVSSMGAGSVFFTHVIKATEPVVGMLVLLAFTGKIAPWWVNACLAPIVGGVVYAGIKPGTAFGMGDLLGYASVAALASTVAFSIAKLLAKSLMTKETKKKHNLTPANNYAVLTVCSTLVLLLPSALGEGPAALAAIKAMPNPAAFMRQLVGCGFLYYGYNEMGFRVLDLLSPVSAAVANSLKRVAVLLAAVIFLGEKVSSRKIIGSSVAMAGVLLYSLAKTKAA 375
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BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: F0XXB0_AURAN (TPT domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXB0_AURAN)

HSP 1 Score: 216 bits (551), Expect = 1.130e-61
Identity = 120/233 (51.50%), Postives = 154/233 (66.09%), Query Frame = 3 
Query:    6 LPIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGATAREGYDAVEDKATLVKTLLGCGLAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAK 704
            LPIAALH GGH   V SM AG+V FTH+IKA+EPV  T++   F  ++ P  VN  L PIVGGVAYAA KPG    +S L+G AS  A+ S V F+I  +L+K +M  E K   N+ A N YA LTI S  +L+LP+   EG  A   +  + D+    + L+ CG  YY YNEMGFRVL+ L PVSAAV N++KRV I+ A V+FLGE+++T K IG+S+A+ G L YSLAK
Sbjct:   67 LPIAALHCGGHGLQVSSMGAGSVFFTHVIKATEPVIGTLVLLAFTGKIAPWWVNACLTPIVGGVAYAAFKPGTSFPLSDLVGYASLAALGSTVAFSIAKLLAKSLMGKETKQKYNLTAPNNYAFLTICSTTLLLLPSALGEGGAALAAFQQMPDQLAFARQLVACGFLYYGYNEMGFRVLDLLSPVSAAVANSLKRVAILLAAVLFLGEQVSTRKIIGSSVAMGGVLLYSLAK 299
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BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: A0A7S2MHQ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHQ2_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.140e-59
Identity = 119/244 (48.77%), Postives = 163/244 (66.80%), Query Frame = 3 
Query:    6 LPIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGATAREGYDAVED-KATLVKTLLGCGLAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAKNNAAAAKKAK 734
            LPIA LHAGGH + V SM  G V FTH+IKA+EPV  T++  +F  ++ P  VN+ L PIVGGVAYA++KPG   D+S L+  ++  A+ S   FAI  +L+K +MT   K  +N++ +N YAVLT  SA +L+LP+   EG  A     A+   +A  +   +GCG+ YY+YNEMGFRVLN L PVSAAV N+ KRVV++ A VVFLGE ++  K IG+++A+ G   YS+AK  A A ++AK
Sbjct:  147 LPIALLHAGGHCSQVASMGMGTVFFTHVIKAAEPVIGTLVVLLFTGKLAPWYVNLMLTPIVGGVAYASIKPGTAFDISSLVSTSALLALVSTFAFAIAKLLAKNLMTPTMKKDRNLNPANNYAVLTCCSASVLLLPSFIAEGPKALADLAALGPARAGFILEAIGCGMLYYMYNEMGFRVLNLLTPVSAAVCNSAKRVVVLFAAVVFLGEAVSKKKLIGSTVAIGGVTLYSVAK--AVAGRRAK 388
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BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: A0A7S0P061_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P061_9EUKA)

HSP 1 Score: 199 bits (505), Expect = 9.170e-55
Identity = 117/249 (46.99%), Postives = 154/249 (61.85%), Query Frame = 3 
Query:    6 LPIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGATAREGYDAVEDKATLVKT-LLGCGLAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAK----NNAAAAKKAKT 737
            +PI  LHA GH   V  + AG+V F  +IKA+EP+  T+I+     ++ P  VN+  LPIVGGVAYAA KPG G D+S L   A+  A+TS VFFA+  +L+K++MT E K    +DA N Y++LT  S  +L++P    EGA A     A +D    + T LL CG  Y+ YNE GFRVL+   PVS AV N+ KRVVI+   + FLGE  +T K +GA+IA+AG  +YSLAK      A AAK  KT
Sbjct:   70 VPIGVLHAAGHALQVAGIGAGSVYFGTVIKATEPLIGTVIAFAATGKLAPWYVNLTFLPIVGGVAYAASKPGAGADLSDLASFAALAALTSTVFFAVAKLLAKRMMTTEMKEQHGLDAVNMYSLLTCYSTSLLLVPCFLAEGAEAWAALTASKDGGLRLATRLLLCGFYYFSYNECGFRVLDAFGPVSQAVANSAKRVVILFFAIYFLGESASTRKLVGAAIAIAGVTSYSLAKLYSDRKAVAAKSQKT 318
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BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: R1EGF7_EMIHU (TPT domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EGF7_EMIHU)

HSP 1 Score: 187 bits (474), Expect = 1.550e-50
Identity = 110/243 (45.27%), Postives = 147/243 (60.49%), Query Frame = 3 
Query:    6 LPIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGATAREGYDAVEDKATLVKTLLGCGLAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAKNNAAAAKKAK 734
            LPIA LHA GH   V  + AG+V F  IIKA+EP+  T+I+     +  P  VN+  +PIVGG+AYAA KPG   D+S L   A+  A++S VFFA+  +L K++MTA+ K    +DA+NTY+VLT  SA +L+ P                        +LL CGL Y+ YNE GFRVL++L PVS AV N  KR+VI+   VVFLGEE +  K +GA +A+AG  +YS A+  A A  +AK
Sbjct:   78 LPIAVLHAAGHALQVAGIGAGSVYFGTIIKATEPLIGTLIAYAVDGKAAPWYVNLTFVPIVGGIAYAAAKPGAAADLSDLASFAAVAALSSTVFFALAKLLVKRLMTADMKRRHGLDAANTYSVLTCCSAALLLAP------------------------SLLLCGLYYFAYNECGFRVLDKLSPVSQAVANAAKRLVILFFAVVFLGEEASGRKLVGAGVAIAGVTSYSFARLRADAHARAK 296
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BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: A0A7S4A8D7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8D7_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.330e-49
Identity = 106/238 (44.54%), Postives = 145/238 (60.92%), Query Frame = 3 
Query:    9 PIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGATAREGYDAVE--DKATLVKTLLGCGLAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAKNNAA 716
            PI ALHAGGH A V+S  AG+V   H++KA EP+  T+I  +F      +  N+ L+PIV GV YAA KPG G+D   L  L +  A+ S V FA   +L+K+ M+ + K A+N+D +N Y +LT+ S + L +PA   EGA A   YDA++  D   ++  +   G  YYL NE  FRVL  LDPVS AV N  KRV ++ A  VFLGE  +T K +G+ +A+ G L Y L+K +AA
Sbjct:   91 PIGALHAGGHGAQVVSFGAGSVFMAHVVKALEPIVGTVIGYLFLGSTPSLMTNLSLVPIVCGVVYAASKPG-GVDFGGLTSLPARTALVSTVAFAFAKVLAKRQMSPKVKKARNLDGANVYGLLTLCSCVCLAVPAFLLEGAAA---YDALQSTDSMIVLSLVARSGALYYLSNEFSFRVLGMLDPVSQAVANAAKRVFVLAAAAVFLGEVPSTRKIVGSCVALLGVLGYGLSKRDAA 324
[Close]
BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: A0A7S2KZ33_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KZ33_9STRA)

HSP 1 Score: 179 bits (455), Expect = 6.770e-47
Identity = 115/241 (47.72%), Postives = 156/241 (64.73%), Query Frame = 3 
Query:    3 LLPIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGATAREGYDAV------EDKATLVKTLLGCGLAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAKN 707
            L PIA  H G H+ AV+++ AGAVSF HI+KASEPV   +++ I   E+ P+ V + LLPI+GGVA A+MK     ++S    LA A AM SNV  A RG+LSKK M+ + K  +NMDA N YAVLT +S+++L+   L  EG     G+  +       +K+  +   LG GLAYY YNE+ F  L +++PV+ AVGNT+KRVVI+ A+V+     M+T   IG+SIA+AGTL YSLA N
Sbjct:  147 LFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLLNGIILKEVLPLPVYMTLLPIIGGVAIASMK-----ELSFTF-LALASAMLSNVSSAARGVLSKKTMSGK-KIGENMDAQNLYAVLTAMSSLILIPMMLAIEGTGFFGGFKNLVATGEFTNKSLSLLLALG-GLAYYAYNEVAFLALGKVNPVTHAVGNTIKRVVIIVASVIAFKTPMSTGSIIGSSIAIAGTLLYSLAMN 379
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BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: A0A7S1UP22_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UP22_9STRA)

HSP 1 Score: 178 bits (452), Expect = 2.940e-46
Identity = 118/249 (47.39%), Postives = 158/249 (63.45%), Query Frame = 3 
Query:    3 LLPIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGATAREGYDAVEDKATLVK----TLLGCG-LAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAKNNAAAAKKAK 734
            L PIA  H G H+ AV+++ AGAVSF HI+KASEPV    ++ +   ++ PM V   LLPI+GGVA A+MK     ++S  M LA A AM SNV  A RG+LSKK M+ + +  +N+DA N YAVLT +S  +L+   L  EG      +  V +     K    TLLG G L+YY YNE+ F  L +++PV+ AVGNT+KRVVI+ A+V+     M+T   IG+SIA+AGTL YSLA N  A+ K+AK
Sbjct:  164 LFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCGLNALLLGQILPMKVYATLLPIIGGVAIASMK-----ELSFTM-LALASAMLSNVSSAARGVLSKKTMSGK-EIGENLDAQNLYAVLTAMSTAILIPLMLAIEGTGMFSAFSKVVEAGEFTKKSLATLLGLGGLSYYAYNEVAFLALGKVNPVTHAVGNTIKRVVIIVASVIAFKTPMSTGSIIGSSIAIAGTLLYSLAMN--ASKKEAK 403
[Close]
BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Match: A0A1E7FFK1_9STRA (TPT-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFK1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 7.210e-46
Identity = 114/240 (47.50%), Postives = 158/240 (65.83%), Query Frame = 3 
Query:    3 LLPIAALHAGGHLAAVLSMSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYAAMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMDASNTYAVLTILSAMMLVLPALYFEGA---TAREGYDAVEDKATL-VKTLLGCG-LAYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTIGASIAVAGTLAYSLAKN 707
            L+PIA  H G H+ AV+++ AGAVSF HI+KASEPV   +++ +F  ++ P+ V + LLPI+GGVA A+MK     ++S  + LA A AM SNV  + RG+LSKK M+ + K  +NMDA N YAVLT +++ +L+   L  EG    TA +   A  D     +  LLG G ++YY YNE+ F  L +++PV+ AVGNT+KRVVI+ A+VV     M+T   IG+SIA+AGTL YSLA N
Sbjct:  150 LIPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLLNYLFLGQVLPLPVYLTLLPIIGGVAIASMK-----ELSFTV-LALASAMLSNVSSSARGVLSKKTMSGK-KIGENMDAQNLYAVLTAMASCILIPLCLAIEGTGMFTAAKSVVAAGDFTNKGLAMLLGLGGISYYAYNEVAFLALGKVNPVTHAVGNTIKRVVIIVASVVAFKTPMSTGSIIGSSIAIAGTLMYSLAMN 382
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6967.14906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1N0_ECTSI1.020e-12480.49Triose phosphate/phosphate translocator, non-green... [more]
A0A7S3ZMF2_9STRA8.860e-6250.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0XXB0_AURAN1.130e-6151.50TPT domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S2MHQ2_9STRA2.140e-5948.77Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0P061_9EUKA9.170e-5546.99Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
R1EGF7_EMIHU1.550e-5045.27TPT domain-containing protein n=3 Tax=Emiliania hu... [more]
A0A7S4A8D7_9STRA2.330e-4944.54Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2KZ33_9STRA6.770e-4747.72Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1UP22_9STRA2.940e-4647.39Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1E7FFK1_9STRA7.210e-4647.50TPT-domain-containing protein n=1 Tax=Fragilariops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6967contigH-paniculata_contig6967:3089..9940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.8
Seed ortholog evalue3.1e-95
Seed eggNOG ortholog2880.D7G1N0
Preferred nameSLC35E3
KEGG koko:K06643,ko:K15283,ko:K15285
KEGG TC2.A.7.9
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
Ec32 ortholog descriptionTriose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT), C-terminal
Ec32 orthologEc-19_005110.1
EC2.3.2.27
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Exons7
Model size1944
Cds size687
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930837.3596456-UTR-H-paniculata_contig6967:3088..42891622930837.3596456-UTR-H-paniculata_contig6967:3088..4289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6967 3089..4289 -
1691481474.735158-UTR-H-paniculata_contig6967:3088..42891691481474.735158-UTR-H-paniculata_contig6967:3088..4289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6967 3089..4289 -
1622930837.4946072-UTR-H-paniculata_contig6967:9884..99401622930837.4946072-UTR-H-paniculata_contig6967:9884..9940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6967 9885..9940 -
1691481474.80645-UTR-H-paniculata_contig6967:9884..99401691481474.80645-UTR-H-paniculata_contig6967:9884..9940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6967 9885..9940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930837.3778293-CDS-H-paniculata_contig6967:4289..43821622930837.3778293-CDS-H-paniculata_contig6967:4289..4382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 4290..4382 -
1691481474.7474174-CDS-H-paniculata_contig6967:4289..43821691481474.7474174-CDS-H-paniculata_contig6967:4289..4382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 4290..4382 -
1622930837.392113-CDS-H-paniculata_contig6967:5266..53271622930837.392113-CDS-H-paniculata_contig6967:5266..5327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 5267..5327 -
1691481474.7552345-CDS-H-paniculata_contig6967:5266..53271691481474.7552345-CDS-H-paniculata_contig6967:5266..5327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 5267..5327 -
1622930837.4058638-CDS-H-paniculata_contig6967:5819..59231622930837.4058638-CDS-H-paniculata_contig6967:5819..5923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 5820..5923 -
1691481474.7628744-CDS-H-paniculata_contig6967:5819..59231691481474.7628744-CDS-H-paniculata_contig6967:5819..5923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 5820..5923 -
1622930837.4206645-CDS-H-paniculata_contig6967:6690..68581622930837.4206645-CDS-H-paniculata_contig6967:6690..6858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 6691..6858 -
1691481474.7704108-CDS-H-paniculata_contig6967:6690..68581691481474.7704108-CDS-H-paniculata_contig6967:6690..6858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 6691..6858 -
1622930837.436483-CDS-H-paniculata_contig6967:7839..79321622930837.436483-CDS-H-paniculata_contig6967:7839..7932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 7840..7932 -
1691481474.7785184-CDS-H-paniculata_contig6967:7839..79321691481474.7785184-CDS-H-paniculata_contig6967:7839..7932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 7840..7932 -
1622930837.4584196-CDS-H-paniculata_contig6967:8585..86571622930837.4584196-CDS-H-paniculata_contig6967:8585..8657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 8586..8657 -
1691481474.787116-CDS-H-paniculata_contig6967:8585..86571691481474.787116-CDS-H-paniculata_contig6967:8585..8657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 8586..8657 -
1622930837.4774861-CDS-H-paniculata_contig6967:9788..98841622930837.4774861-CDS-H-paniculata_contig6967:9788..9884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 9789..9884 -
1691481474.7979212-CDS-H-paniculata_contig6967:9788..98841691481474.7979212-CDS-H-paniculata_contig6967:9788..9884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 9789..9884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6967.14906.1prot_H-paniculata_contig6967.14906.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6967 4290..9884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6967.14906.1

>prot_H-paniculata_contig6967.14906.1 ID=prot_H-paniculata_contig6967.14906.1|Name=mRNA_H-paniculata_contig6967.14906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
MSAGAVSFTHIIKASEPVAATIISPIFGVEMQPMTVNIFLLPIVGGVAYA
AMKPGQGLDVSQLMGLASAYAMTSNVFFAIRGMLSKKVMTAEYKAAKNMD
ASNTYAVLTILSAMMLVLPALYFEGATAREGYDAVEDKATLVKTLLGCGL
AYYLYNEMGFRVLNRLDPVSAAVGNTVKRVVIMGATVVFLGEEMNTNKTI
GASIAVAGTLAYSLAKNNAAAAKKAKTA*
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mRNA from alignment at H-paniculata_contig6967:3089..9940-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6967.14906.1 ID=mRNA_H-paniculata_contig6967.14906.1|Name=mRNA_H-paniculata_contig6967.14906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6852bp|location=Sequence derived from alignment at H-paniculata_contig6967:3089..9940- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTGCTGCCGATTGCAGCTCTTCATGCTGGTGGTCACCTGGCGGCGGTC
CTCTCCATGAGCGCGGGGGCTGTATCTTTCACGCACATCATCAAGGCATC
GGAGCCCGTGGCAGCCACCATCATCAGCCCAATCTTCGGCGTCGAGATGC
AGGTACTGCACATTTTGTCTGCGGTAATTCCCCTTGAAGACTAACGTTTA
CAGAGATCGGACACACTCGGTTGGGTCAAAATTGTGGAGGCATTGGGATA
GAAGTGGTATACGAAAGCGGTGACGCTATCCTTCAGGTATCAGTATATAT
ATATCAAATTTTTGTTAATTTTTTTTTTTTTTTTTAATAAGTCATGAGCA
TTTTAAAAATTATTTTCTACTGTTTTAAGGTATTGCTGTTGCTTGAAAAT
TCTTTATCTTTACGAAGCTTGTCCAATTATTTAATTTTTTTGCTCTTTTT
ATATAATATTTCTTTATCAGAAATTAAAGAGCTTTTAACTCGATTTATTT
TTGCCTGAACTCTTTTTTTTTTTTCAACAATTATTAACAAACTTAACTAC
AACATGGTTAACACTTACAACTTGTTGTTTTTTCAATTTCTTATTAAAAA
CAAATTTTGATTTTTAATTTTTAATATATATATATATAAACATTTAGTTG
TTTTTTTTCCAAGTTTTCCCGCTGGTGCTATCGGGATAAAGTTTTGAAAA
ACGCAGGACATGGCCATTGGCTATTATGAAGGAGCACGGTATGACGTGGT
GCGGTACAGTTGTCAACAGCGCGGCGAAGCGCAAGCAGGAACGATTACTT
TGGGTTAACCTCTTCGGATATTGAGAAATTGGAAGATGCTGTGGATGCAT
AATAGGTCGCTGACACACAAGCATGGCGGGTGTTTCGATTTTAAGCGGAT
CAACTGATAACGCTTTGGTCTCATATGTGTGTATGTGATGTGACAAGCCG
ACCCTAATATCCGCTTTAGCTATATTACAGTGCCGAGGGCAATGCAACAT
AGGCAATGCGGCAATCCAGCGACGTAATTATAGTCGGCTTATAAGTCGGT
TTATGAGTTGGATTATAACCAAACCATGAATGTTAGGGTGCGAGGAGGAG
CTCTGTCTCTCTCTCACACATACACATACGCGGGTTCTCTCTCGTGCGCT
ACGCAACTTCTCGCCTAGGCGAGAGAGCACAGGTGCTCACACGTATGGTG
ATGAAAACTGATGCAATCTTACTTCACATTTCGCCTGTTACGGTTCGCGT
TGTGCTTTGCTTAATTTGTTTGTCATCTCTCAGCCGATGACGGTGAACAT
ATTTCTGCTGCCCATCGTCGGCGGTGTTGCTTACGCCGCAATGAAGCCCG
GTCAGGTATGTATCAATGTATCATCATATGTATACCCATCACATTTTTTT
TCTTGGTGTGCAACCGTTGTGGATAATGACCTATAGTAAATATAATGTAG
CAGTCAGTTCGTTCCACTTATCCCCCCCCCCTCAAAAAAAAAAATGTAAA
TAATTCGACCAATTCGAATCTGAATTCACATTAATATATTTAGGTAGAAA
TGACATGACACGGCACCTCACAATGGTAGACACAAATATCGAAATAGGGA
TGATTGATCCTCCTCTCGACTCTAATCTGTACATATCAATAGCTACGACA
TACTCCCCGAATCAGTACACTGTCATGGCTAGTCGTACAAGTAGTTCCAG
CGGCATTGGTGCCTGTCCTTAGGTGGACACCTTCTTGCACGGGGTCTCGA
TCACGCGGTGTGTATGTTTGCTTGTTCTACTGTGTTCGTCTGTTTTTTGT
TGTCGCCCTCAAGCGCGATATCAGAAAGGAAGCTAGGTAGTGCCTTGCTT
CTATCGAGAAAATAGCACTGCTGAATTTGGGCTGTTTTTCCGGCGGTGTT
GTCTGTCTGGGTTTTGTTCGTCCTTGTGATTGTGATGGTAAATGCTGACT
GATGGTGATGATGATGATCACGTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGTAGGGCTTGGACGTATCGCAGCTGATGGGCCTGGCGTCGGCGTAC
GCAATGACATCCAATGTGTTCTTCGCCATCCGTGGTATGCTCTCCAAGAA
GGTAGGCACCTGCGCACCGTTACCTCAGCACCTTCCTTTCCTGTTTTTTG
TTCTCAAGCACACCCTTTTCCTCTTTATTTTACGTGTTTTCCCTTTTCCT
CGGTATTTGATCTAGCTTGTCGAACATCTAGTTTGTAGAACATCTACTTT
GTAGAACACCTACTTTGTAGAACATCTACTTTGTAGAGCATGTAGTTTGT
AGTGTAGAACACCTACTTTGTAGAACATGTAGTTTGTAGAACATGTAGTT
TGTAGAACATCTAGTTTGTAGAACATCTTTTATGGTGCGTGTAGCTCCTC
TTTTTTTTTTTTCTGGTCATCTCTTGAGGTGTTATTTTTCTCGTCTTCAT
CCGCGGCATATTCTCCCACCGCAGGTACTAAAGGTATCAACATGATCTAC
TGAGCAGTATATATATATATATATATATATATATATGTACCTTAAGGTGT
CTCATTTTTGCATGCAATGCTGTCCGTCCTGCTGGTCTCCGTCTGGTAAA
AATATGACAAATGACCTAAAGGTAATTTCTTTCTCGTAGTTGTACTGGCG
ATATCTTCGATATGTGTTGTATTTCTCGGTCGAACAAAATGGCACTTGAT
GACTTCATCCTATCTATGCACATGAAGAGAGGTGTAACGTAAAGATCTTA
AACACGGAAAAATAAGAGACATCCATAGGTAAAAACTCTGCGTGCGTAAG
ATGGGGAATGACATATCGACCAGAACACATAAACTATGGGGATTTTCAAC
GCGGCGTCGAATGCTACAAGAGTAAAATGTTGGTCACTTGCGGGGGGGGG
GTTTCGCGTATAGTACGTACGCTGGTGAGTGCAGTGTACAAGGCGCAATC
GGTCAAAGGAGGATGACCCTGACGCATGCGTAGCAGTACTGTTGTCTTGG
CATCAACGTGTTGCATTCCTCCCCGACCATCTTCGAAATAGCCAAAGTTC
TTGTTAAACATGAATCGAAATTTTTTGTGCAGGTGATGACTGCGGAATAC
AAGGCGGCGAAGAACATGGATGCCTCCAACACGTACGCGGTGCTGACTAT
CCTGTCGGCCATGATGCTCGTGCTGCCAGCTCTATATTTCGAGGGAGCGA
CCGCGAGAGAAGGTTATGATGCTGTCGAAGACAAGGCTACTCTGGTCAAG
GTATGTTGTTGACTTGACTTGTGCTGGCATCATGCCATGTTATGCCACGT
CATGTGTTCGATGCCTCGTGACTTCCGCAGGTTTGGGCTTGTAACGCGAG
CGTAGAGACAAGAGTCTTGGAGCCTTTTTTAGGGTGTAGACGGGAGAGTC
TCCGAAAGGGGGGCAGACAGCGGCTCGTTCAGTCCTTATCTTCCCACCAA
TCGGTAGCAAGAACTAGATCCGATCCAGATTCGGTAATCAGAATAGAATG
TTCCGAGAACATTCCAGGAACGTTAGTAACCCTTAAACCAACACAGATAA
TCTCGCATGCATAAGTAGGCTGAATCAAAGAATCCAAATGTGAGATCCAC
TTAGCATGCGTATAATCCGACATGATGTTGTGTCGAAAAGCTCGTGCCTC
CGTTATATGTGATGTATGCCCTTATCCTTTATGCCTTGTATATTGAAGAA
AAAAAAAAAATATATATATATATATATATATTATATATATATATATACAT
TTTGTTTTTTTCTGATGTTTGCGGGATTTGGTTTGAGGTTCTCTCTGTTT
CTGTAGAGGGATGCATTAGGTGATGCGTTAGCACGTTTTGTTCGTTGTGT
ATTTGATGCTTGATTTTTAACTTACATATTGGTGTTTATATCTATTCCGT
TTTCATGTCTTAATTTTTGCTTAACTCACTTTTGACACTAACTGACGTAC
AGATCCATTAATTTAGTCTCTCATTGATGTATTCGTTTGTTTTGCTTGAC
TGCGGCACTCGACAAAGACGCTGCTCGGCTGCGGGCTGGCGTACTACCTG
TACAACGAGATGGGCTTCAGAGTGCTCAACAGGCTCGACCCTGTGTCCGC
TGCCGTGGGAAACACCGTCAAGTGAGGAAGGAGATCACATCACCTCTATA
TAGTAATCGTAGTCATGATTTAGTCAGATCTAGCGGATCCTTCATTATTC
AAAGCACTCGTAAACAAGCGTACATTTGATTTATGCATCGTACAAGGCAT
GTTGTAGATGAAGATGTGTGTGTGTGTTGCGATTATTGCAATAGCCTCTT
GTCGGGGCAATCTTGGAGCAATATTTCCAACGAAACGCAGTCTTTTGGTC
GCTTGGAGAGTCAATCACACAATTCGCACGCCTCATCGTTGCCGAGAGAA
TCGAGTGTGAAAAAGCCATCATTACCCAGCGGTTATTATACCGTATTCAA
CAGGATACAGCCTCTTCCTTAGGTATATCGTTGTCGTCCCGAGTTCTTGT
GTAGATGTATGTCTCTTCGCTGTTAATCGTTGTTCTATCCCGCTCCCTTG
CTTTTTTTTTTTTATTGGCCATGACGTTTTCATTTTGTCTACCCCCTCGT
CAACAACCGCAAGGCGTGTAGTGATCATGGGAGCCACCGTTGTCTTTTTG
GGGGAGGAAATGAACACGAACAAGGTCAGTAACATTGCCAACACCTCGGA
ATTTAGCTGTACTACTGTACTAGGGCCAAAGCTGCTCCCGTGCGGTCTGT
GCTGTGTTCCCGGAAAACATTCAAATCGAAATTTCTTGTTAGAGATCACT
TGAGCATATACTGTACGGAAAATATTCCGATTAATCGAGATCGTTTTTGT
GGAGCTACCTCACTCAGGTGCACGAAAAACTGTTCTTAATCATGGTCAAC
GGCGATGTCGACCTCGGCCGTTGGATTATATATACGACGATTGCATGGAT
GTAACCCGTTCCCTTCGAGAACGCTAGTATACTGGGGGAACTCGTATATG
TAGGTGTGCTCAGGTAAGACATCGCGAATTCACGTGTAACGCGGGTGGCT
ACGACTTGCTTCATATGGTATTCACTTATGATGGTAAAAAAATCCGTGAG
TTGACGTCAATTCCGAACAGTGTTTTGCGGACGGATTTTTATTAATTTGT
ATGTCTCTCGGTCTTTTGAAAATAGAACAGGGTATTTTTCGTGTGCTTTA
GATGGGATACATGCACGCCTTTTGGCTGTTCGATTTTTTGGAGAGGACGA
ACGGAAGGATCTAACGTTACAAGGTGTACGGTATATACTGGAAGAAATCG
TCGAGAAAACGTCCGGAGTCATCTCAATCAACTTACACCTTGTTTTTTGT
TCATGTTCAATATCTAGCTCTTAATTCTGTACCTTTGGCCAGTATGTCTG
GTTTTACCCTGGTCAGTACTGCAACTATACAACTCCACAGCCTGAACTCA
ACAAGCTCTAAACACCATGTTCTTTTTGGTTCTAAAAAATTCATTTTGTC
CGTTTTTTCACGTGTTTTTTTTCTGCATTTCATTTTCTTTTTCTTTTTTT
GGTCACAGACCATAGGCGCTAGCATCGCCGTCGCTGGAACCCTGGCTTAC
TCTTTGGCCAAGAACAATGCTGCCGCCGCCAAGAAGGCCAAGACTGCATA
AACATCTGTCTTATCCCAACTCACCAACGCAAAATGGGCCATTTCTTGGG
GCTGCGCGCGCGAGGGGACGGAGGTTAGATGTCGCATGATGGGTGCTTAC
GACACGAATTATCCTAGAGGTACCTACCTGGCTGGGTGTGTTGTGTTTTT
ATCAGACACCACGAGGGTGTTTCTACAGTGATTAGCTCTTGGCATGCTTT
AGAGTCAAATGAAAGAGAAATGTCACTCACGTGAGTCATGTCGATTGGAA
ATCTGTCCAGATATAATTTTATGTTGATGGGTTTCGCAAGCTGATCACAA
CGTCGAGGATAATCGGCACAAAACCTCTGAGTACAGGTGTTGGTTTGTAG
TGCAATCGATTTTATTAGCCTTGGAAGTGTGGATATGGTTTTAGATTCGT
CCAGGTTGAGGTGTGAATCAGAAGTCGGTTGCTACTACTGTACCGGGTAA
ATTTACGCATGAAAAAAAAAAAAAAAGTATTTTATCGTGTCTGGAAATCT
TGCTGTTGTCAAGGGGGGAACTGACATGTTGCATAAATTTGCGTTCGTTC
ACTCAATTTGGTATGTGGTGTTCTTTTGCAGGAGCGTGGAATATGGAGGT
AGTTCAGCGTCGTGGCTGTCATTAGCAGGTGCTTGGCATTTTTCAAGGGT
ATTTCTTTTTCAAAGTGGTGATGGTGATGGTGTCAGGTTCACCAAGGGAT
GGTGGTGGGTTAAGTTGGGTAGACGGTACCCTGGGTCTTGATTACACGTC
TTCTCTCTATATCCTGTTTTGTTGTAGACAGCGAAAATACATCTTGGTCA
GAGTAGACGATGGTGGTGTACCCCTTCGACAATGTGTTTTGATAGACCAG
TTGAAACGGGGTCGTCGTTTTTTTTCAGGGTTCACTGGTCCATCCTAAAA
ACCAGGTAGAGGAGAAAAAAAATGTAGGAAAGGCTACGGGGTAAATGTGG
TTAAACCACTATCGCTTATCTAAACATCTCCACCCCACCCCCAGAAATAC
ACCATGCTTCACTCGGATAAATCGTTTTCTAACACATTACACCACACGTA
CTTATTACACAACATACAAGAACTTAATCACACTCTGCACATGTACTAGG
CTAGTCAACAACAAACACACACCGTACCGCGGTACAATGGGGTTGCGTCT
GAGAAGGCCACGATGGGCACTAATAATGGAACAGAAGAGGTCTTGGCGGT
GG
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Coding sequence (CDS) from alignment at H-paniculata_contig6967:3089..9940-

>mRNA_H-paniculata_contig6967.14906.1 ID=mRNA_H-paniculata_contig6967.14906.1|Name=mRNA_H-paniculata_contig6967.14906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig6967:3089..9940- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGCGGGGGCTGTATCTTTCACGCACATCATCAAGGCATCGGAGCC
CGTGGCAGCCACCATCATCAGCCCAATCTTCGGCGTCGAGATGCAGATGA
GCGCGGGGGCTGTATCTTTCACGCACATCATCAAGGCATCGGAGCCCGTG
GCAGCCACCATCATCAGCCCAATCTTCGGCGTCGAGATGCAGCCGATGAC
GGTGAACATATTTCTGCTGCCCATCGTCGGCGGTGTTGCTTACGCCGCAA
TGAAGCCCGGTCAGCCGATGACGGTGAACATATTTCTGCTGCCCATCGTC
GGCGGTGTTGCTTACGCCGCAATGAAGCCCGGTCAGGGCTTGGACGTATC
GCAGCTGATGGGCCTGGCGTCGGCGTACGCAATGACATCCAATGTGTTCT
TCGCCATCCGTGGTATGCTCTCCAAGAAGGGCTTGGACGTATCGCAGCTG
ATGGGCCTGGCGTCGGCGTACGCAATGACATCCAATGTGTTCTTCGCCAT
CCGTGGTATGCTCTCCAAGAAGGTGATGACTGCGGAATACAAGGCGGCGA
AGAACATGGATGCCTCCAACACGTACGCGGTGCTGACTATCCTGTCGGCC
ATGATGCTCGTGCTGCCAGCTCTATATTTCGAGGGAGCGACCGCGAGAGA
AGGTTATGATGCTGTCGAAGACAAGGCTACTCTGGTCAAGGTGATGACTG
CGGAATACAAGGCGGCGAAGAACATGGATGCCTCCAACACGTACGCGGTG
CTGACTATCCTGTCGGCCATGATGCTCGTGCTGCCAGCTCTATATTTCGA
GGGAGCGACCGCGAGAGAAGGTTATGATGCTGTCGAAGACAAGGCTACTC
TGGTCAAGACGCTGCTCGGCTGCGGGCTGGCGTACTACCTGTACAACGAG
ATGGGCTTCAGAGTGCTCAACAGGCTCGACCCTGTGTCCGCTGCCGTGGG
AAACACCGTCAAACGCTGCTCGGCTGCGGGCTGGCGTACTACCTGTACAA
CGAGATGGGCTTCAGAGTGCTCAACAGGCTCGACCCTGTGTCCGCTGCCG
TGGGAAACACCGTCAAGCGTGTAGTGATCATGGGAGCCACCGTTGTCTTT
TTGGGGGAGGAAATGAACACGAACAAGGCGTGTAGTGATCATGGGAGCCA
CCGTTGTCTTTTTGGGGGAGGAAATGAACACGAACAAGACCATAGGCGCT
AGCATCGCCGTCGCTGGAACCCTGGCTTACTCTTTGGCCAAGAACAATGC
TGCCGCCGCCAAGAAGGCCAAGACTGCATAAACCATAGGCGCTAGCATCG
CCGTCGCTGGAACCCTGGCTTACTCTTTGGCCAAGAACAATGCTGCCGCC
GCCAAGAAGGCCAAGACTGCATAA
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