mRNA_H-paniculata_contig6965.14902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6965.14902.1
Unique NamemRNA_H-paniculata_contig6965.14902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6965.14902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6965contigH-paniculata_contig6965:3700..7850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1157
Cds size837
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6965.14902.1prot_H-paniculata_contig6965.14902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6965 3700..7531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930836.9818354-CDS-H-paniculata_contig6965:3699..43771622930836.9818354-CDS-H-paniculata_contig6965:3699..4377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6965 3700..4377 -
1691481474.5888634-CDS-H-paniculata_contig6965:3699..43771691481474.5888634-CDS-H-paniculata_contig6965:3699..4377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6965 3700..4377 -
1622930836.9952621-CDS-H-paniculata_contig6965:4788..48891622930836.9952621-CDS-H-paniculata_contig6965:4788..4889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6965 4789..4889 -
1691481474.6018884-CDS-H-paniculata_contig6965:4788..48891691481474.6018884-CDS-H-paniculata_contig6965:4788..4889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6965 4789..4889 -
1622930837.009534-CDS-H-paniculata_contig6965:7473..75311622930837.009534-CDS-H-paniculata_contig6965:7473..7531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6965 7474..7531 -
1691481474.6109688-CDS-H-paniculata_contig6965:7473..75311691481474.6109688-CDS-H-paniculata_contig6965:7473..7531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6965 7474..7531 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930837.0233977-UTR-H-paniculata_contig6965:7531..78501622930837.0233977-UTR-H-paniculata_contig6965:7531..7850Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6965 7532..7850 -
1691481474.620348-UTR-H-paniculata_contig6965:7531..78501691481474.620348-UTR-H-paniculata_contig6965:7531..7850Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6965 7532..7850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6965.14902.1

>prot_H-paniculata_contig6965.14902.1 ID=prot_H-paniculata_contig6965.14902.1|Name=mRNA_H-paniculata_contig6965.14902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
MEGGAEKQVSEQPGITASAVHTAEVYVGHSADADPHGEAGPGQGQGQASH
QQQVFAQSQQQQQTQYQQPPQHQQQQQNQSAFVNANNGSSPHQMDKDNGS
SNNNNKEPSGDHHPNNHNIASGLVGPLQGQHDDRRIAIQLQPPAPSADSG
TVNLPGIGLGNPGPQRGDAAEPGPDQGLDVATMASRGSGGGGGLNAGAAG
GIGLGMNPGSMLMGIAAGLPNGGSTEQRSIGIGGVGMPGGGGPMAGGPIA
GGIAGGAGGGMAMAMMPGMAGGRGVGQAG
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mRNA from alignment at H-paniculata_contig6965:3700..7850-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6965.14902.1 ID=mRNA_H-paniculata_contig6965.14902.1|Name=mRNA_H-paniculata_contig6965.14902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4151bp|location=Sequence derived from alignment at H-paniculata_contig6965:3700..7850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTAAGTCCACGTACTTCGTGCACGCCGCGGCCTTGTGCATTGCCTGGAA
GAAGAGAGTTGGACGGAGGAGACAAGACCAGTATCTTGTTGTTCGAGGCT
TGAAGAGGCAATTCGAACGGCTCATCCTGTTCGCTCGACACTCTACACCA
ATTTTCAAGACGGGTGTGAGGCGCCTTTTTTTATTTATTGAGTTTCATTT
TGTCACAGGACAGCGGCCAACCCGCCTACTCCTCTCTAAAAGTTGTGTTT
TTCGGTAGCTTCCTGGACTGTCTGTTTACCCCTGCCGCGTCATCGGACAG
ACGGAAAGCGGCAAGCCCGATGGAGGGCGGTGCGGAAAAACAGGTCTCAG
AGCAGCCGGGGATTACGGCATCTGCAGGTGTGTATTTTTGACGCTCGTGT
TTGAGAGAGAGGCATTTGTTCAGCGTCGATCAATGCCCATTTATTTTCTC
CACAAATCGGGTCTCGCTCAACCTACCCTCCTCTACCGAGCAGGTGTACA
TGTGTGTAATTAGTTAGGAAGTCTTCCGCTGATAAAGGGCTCCAATAAGC
CATGTCGTGCGGTCTTGGACATCTAAGTCCTGACGAGGAGTAGCTGTCTG
ATCCTAGATGGAGTTGCGCTGCAATACGCACTTCGTGTTTTGCATCGTAT
GTGTTTTGCAAGGGAAGGACTACAGTATTTTCACCGTCTTCTTTGTACAG
AAAAAGTGGTGCCTTGGAAAGAAACTGTCTCGTGTCGCTATCTGAAAGCG
TGTCGCTGGTCGTCTCACATGCATGTTGCTAAACGCTGAGTTAGATCGAC
TGGTCGACATTGCACTAGCTTGTGTCTAGGAGGCTAACTCCCGCTCTTCA
ATCATGCCAACTCAAGATCGACGATTCACATGTGTCTACTTTTGTTTTTT
GCAGTGTTGCTCCCCTTTTCACCCAGACAAACAGCGAGATCCCGGGGTCC
CGCGTTTTTTTTTCTTCGACGGCATGTGTGTCGATGTTAGTTTTTTTCCG
CCTCTCTTCGAGTTATGCGCAAATACATAGTGGTGAGATTGGCACGAAAA
ATAAGAGCTCGCGTTTTTTGCCATCGCTACGATGTTTCAGGAGTAATTCT
ACAGGAATCATCCAATCTAATTCGCTTTCAACATCCAACGCATACTTTTG
CAGTAAGTCTTCCTGCATATACGTCACATGTGTTATACAGTAGTTGCTGT
GTCCAAACACTCAAAAAAGAGTGCAATCCAACACACGAACACCCCGCGCA
AGTTCAAGCTCGGTGCCGCAAGTTGTTAAAGCCCAGATCCTGCGTGGTAT
CAGCTCGTTCTTCCATGTGTCAGTGACTAGCTAGCAAAGTTAAAAGGATA
ACTTGGGCTACCTTCTCATCAAGCAGCAGTAGGCACATACCTTTCGCCTA
GGCGTTTTTAACCGACATCCACCCGCACCCAACCTCCTTCTTTAGGTTGG
TATTTTGATCTCTTGATGTACATTCATTACATTTAAGATGTTGCCTCGTT
TCACTCGGCAGCAGACAGTTACTGTAGTAATTGCCAGAGATCATGTGTCT
CATATTTTGTGATACCGCCATTGAGGGCCCTCATTAATTCCACGAGCAGC
TCGCGGGGAATGTTTTACGACTTTGTCTTTCCGCGTGTTACCTTTTTTTG
AAACTCAAATGTTCTCGAACGCCTGTAACACCAAGCGAAATTGGGTAGAG
CCAGTGATTTTACAATGGACCATCATGTATGCACATGGGTCACTACAGCT
CGCAAGTTGTGCCGTTGGCCGTTAGCAAGATGCATCGTTGAAATTTGTGG
ATGTACAGCATATTTTGCTTCCAGGATAAACGAGCAGCCGTATTGCACAG
GAGGCGTTTTTATTGGGGGGAGGGAAACTGTGCACCGGATTTGGAGGGAA
TTATGGGACCGATACCACGGAGGCGTTCCCAGTGCAGGACTGGGTTAAAT
GGTCGATTTCAGTGTTCGGTCTGCTGTACATTTCTCAATGGGGGCTTGTT
CGACGTGAGAACGTTTCATCAGTTTGCGAGGGTATGCGTCGTGTTTCTCA
AGAACATTCTGTTAGAAAAATAGATTCGGTGTGCACATGAAGTTCTTCGC
TCTTTTGTAGATTTCATCACGAAAAATGAAGCAGTTGGTAATGGTAAAGA
CGCCATCTTCGTGAGAGCTGCCTGCACACCTAAAGTTGAACATTATTACG
TAACTTGATCTTATTTTTACCATGCGGAACGTGGAACAAAAAACTCGAAG
GTACAACGAAAATATTTTTTATGGCGATAGGCGCTCGAGAACTTTGAAAG
CGTACTGGGGTGCGATTTTTTTCCGAATGCGATAATCTCGAGGACGGAGA
CCCTCCGCAAGACCATTCCAAGAACACACCTTCGGTCAGTACATTAGAAT
ACGTCTTCACGCGCTGCTTGAGAACACTCGTGGTGAAGCCATTGCGACGC
CCATGCAGTCTGTGCTTGTTCTCGATCCACGGCCTCCCTGTGCTCGCAAT
AACTAGCTACGATCTCACGAAGATTCGGTTTTAGGGACCCAATCGAAAAG
GATATCGCAAGGATATTGTTTTCCATTCTGTGTGGTGATGCACTTGATCC
ATTGTCTTAGCTGTTACGACCCCTCGTCAAATTACGGCGTAATGCCAAGA
GCAAAGCAGGCCTTTTCTTGTCTCCTTCGGAGCGCAAGGTGAGCGCGAGT
CCACCCCTTGTTGGCATGATCTCTCGGAGGGCAAGATATGGACAGATCAA
GTTACTGATGCTCTTCATGGACGAGACGGAAAGTTCAACCCGACATGAAA
CGGTCGCATTCTCGTTTCCTTTCTCAGCGGGCGATTCTGTACAACGTTGT
GAAAGGAATTTTGGTAACCTCTTCGCCCGCCCAGATCCGCTGGCTCACTC
ACTTTTTTCCCCATGCGACGAATGAAGACCCCCCACTTCTCATGTTGCTT
GCTCGGTCCAGTGCACACCGCCGAGGTATACGTTGGTCACAGCGCAGATG
CGGACCCACATGGCGAAGCTGGTCCAGGTCAGGGGCAAGGCCAGGCCAGT
CACCAACAACAGGTACACGAGCGCAATTACCGAAACGGGCCTGCGGGAAC
GAACCCTTGTCGTGGAGTGGCGAAGAGGGGTGACACCGCCATGATGCATT
CATACATGTGTGATGACTAGTCTAAAGGGACGAATCAGGAGAGTAGGCTA
TACTAATTAATTCACTCGAGTAATATATGTAAATATTAACGAATAAAGTC
CAATACCGCGCTTGATTGGAGTTACCTTGCGTCAAAAAGATGAAAATATA
TCATATGCTCCTTGTCCCCGCTCCTAAAGCCCTCCATCCATAGACTTATT
GATATCACTTTATGCTCCCTCTTTTGCGTACAGTCTACTGTTCTAGGTAA
TCCAAGCAACGATCGAGCCACCCTAATTGCGAGCATGTAGACTGAGATGT
ATAACTGTGTTCCCCGTCAGCAGGTGTTCGCGCAGTCGCAGCAACAGCAG
CAAACACAATACCAGCAGCCTCCGCAGCATCAACAGCAACAGCAGAATCA
GAGCGCGTTCGTGAACGCTAACAATGGCAGCAGTCCCCATCAGATGGATA
AAGACAACGGCAGCAGCAACAACAATAACAAAGAACCCAGTGGTGACCAT
CATCCCAATAATCACAATATTGCCTCTGGCCTGGTCGGGCCGCTGCAGGG
TCAACACGACGATCGACGAATCGCCATTCAACTTCAACCTCCAGCACCAA
GCGCAGATTCTGGCACCGTGAACCTGCCAGGCATAGGCCTCGGAAACCCA
GGGCCGCAACGAGGGGATGCTGCGGAGCCCGGTCCCGATCAGGGTCTCGA
TGTTGCAACCATGGCCAGCCGAGGCAGTGGCGGCGGCGGCGGGTTGAATG
CCGGTGCGGCGGGCGGAATTGGACTGGGCATGAACCCGGGGTCAATGTTG
ATGGGCATCGCTGCGGGCCTGCCTAATGGCGGCTCAACGGAACAGAGGAG
CATTGGAATTGGCGGAGTGGGTATGCCCGGGGGCGGTGGGCCGATGGCAG
GCGGGCCGATAGCGGGCGGAATAGCGGGAGGTGCCGGGGGTGGAATGGCC
ATGGCGATGATGCCGGGAATGGCAGGTGGTAGGGGCGTTGGACAGGCGGG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig6965:3700..7850-

>mRNA_H-paniculata_contig6965.14902.1 ID=mRNA_H-paniculata_contig6965.14902.1|Name=mRNA_H-paniculata_contig6965.14902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at H-paniculata_contig6965:3700..7850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGCGGTGCGGAAAAACAGGTCTCAGAGCAGCCGGGGATTACGGC
ATCTGCAGATGGAGGGCGGTGCGGAAAAACAGGTCTCAGAGCAGCCGGGG
ATTACGGCATCTGCAGTGCACACCGCCGAGGTATACGTTGGTCACAGCGC
AGATGCGGACCCACATGGCGAAGCTGGTCCAGGTCAGGGGCAAGGCCAGG
CCAGTCACCAACAACAGTGCACACCGCCGAGGTATACGTTGGTCACAGCG
CAGATGCGGACCCACATGGCGAAGCTGGTCCAGGTCAGGGGCAAGGCCAG
GCCAGTCACCAACAACAGGTGTTCGCGCAGTCGCAGCAACAGCAGCAAAC
ACAATACCAGCAGCCTCCGCAGCATCAACAGCAACAGCAGAATCAGAGCG
CGTTCGTGAACGCTAACAATGGCAGCAGTCCCCATCAGATGGATAAAGAC
AACGGCAGCAGCAACAACAATAACAAAGAACCCAGTGGTGACCATCATCC
CAATAATCACAATATTGCCTCTGGCCTGGTCGGGCCGCTGCAGGGTCAAC
ACGACGATCGACGAATCGCCATTCAACTTCAACCTCCAGCACCAAGCGCA
GATTCTGGCACCGTGAACCTGCCAGGCATAGGCCTCGGAAACCCAGGGCC
GCAACGAGGGGATGCTGCGGAGCCCGGTCCCGATCAGGGTCTCGATGTTG
CAACCATGGCCAGCCGAGGCAGTGGCGGCGGCGGCGGGTTGAATGCCGGT
GCGGCGGGCGGAATTGGACTGGGCATGAACCCGGGGTCAATGTTGATGGG
CATCGCTGCGGGCCTGCCTAATGGCGGCTCAACGGAACAGAGGAGCATTG
GAATTGGCGGAGTGGGTATGCCCGGGGGCGGTGGGCCGATGGCAGGCGGG
CCGATAGCGGGCGGAATAGCGGGAGGTGCCGGGGGTGGAATGGCCATGGC
GATGATGCCGGGAATGGCAGGTGGTAGGGGCGTTGGACAGGCGGGAGTGT
TCGCGCAGTCGCAGCAACAGCAGCAAACACAATACCAGCAGCCTCCGCAG
CATCAACAGCAACAGCAGAATCAGAGCGCGTTCGTGAACGCTAACAATGG
CAGCAGTCCCCATCAGATGGATAAAGACAACGGCAGCAGCAACAACAATA
ACAAAGAACCCAGTGGTGACCATCATCCCAATAATCACAATATTGCCTCT
GGCCTGGTCGGGCCGCTGCAGGGTCAACACGACGATCGACGAATCGCCAT
TCAACTTCAACCTCCAGCACCAAGCGCAGATTCTGGCACCGTGAACCTGC
CAGGCATAGGCCTCGGAAACCCAGGGCCGCAACGAGGGGATGCTGCGGAG
CCCGGTCCCGATCAGGGTCTCGATGTTGCAACCATGGCCAGCCGAGGCAG
TGGCGGCGGCGGCGGGTTGAATGCCGGTGCGGCGGGCGGAATTGGACTGG
GCATGAACCCGGGGTCAATGTTGATGGGCATCGCTGCGGGCCTGCCTAAT
GGCGGCTCAACGGAACAGAGGAGCATTGGAATTGGCGGAGTGGGTATGCC
CGGGGGCGGTGGGCCGATGGCAGGCGGGCCGATAGCGGGCGGAATAGCGG
GAGGTGCCGGGGGTGGAATGGCCATGGCGATGATGCCGGGAATGGCAGGT
GGTAGGGGCGTTGGACAGGCGGGA
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