mRNA_H-paniculata_contig694.14880.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig694.14880.1 vs. uniprot
Match: D8LBE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE8_ECTSI) HSP 1 Score: 386 bits (992), Expect = 9.550e-123 Identity = 296/602 (49.17%), Postives = 357/602 (59.30%), Query Frame = 1
Query: 136 RSGEGDATNGRVRSRG-----PSR------NDNQDDDGPSXXXXXXXXSGMSARNGTPTLSPLYRYTHLVQDEYVLTSFPLDTWVGRYVRITTPRHNGQTGKVHRTGNGWVNLQTAGGEVAKRAYNLIVIPESLANITPVGLDDKGESASRAKRYRG-PKGQSYPSGIESASASGDERKPTARGRNSRAPAPTAHSSSXXXXXXXXXXXXXDEHDNGRPPRRRGRATLGGSDFDEADXXXXXXXXXXXD-RYDDDGRVRGPARG--RPFPPSKHSRAMMKSMHGGDGTGERFGGGEFGKDSGKPPGKMSSKYVGPDKGRARVKSDQEKMRDRGR-----GIGDQPRGG--------KGDSYMLSGKVKGADPDAGGARAKRKEPSSALNPPCDSDERMVPGSTNRERVDRSKDKPGAPGPKKEDGMKNSWLSQIAKAKDRPNLVRWREELLPTTKDSSEDFEDATLSVELMKGRCDVCYHEKADGDKFCWNDECWRSPVFFGYFKSGPFGSDSGNGGGRIEPPSTRRKEG-LNFFAKETVIDPALTSALQAPVKWLETKRKRNLETHEVFSEDPALYRWQCWASNFPDPNSKDPTFVDDRRM 1854
RSG+GDATNG R+RG P R +DN+D S S S R P T +DE+ L S PLDTWVGR+VRITTPRHNG TG VHRTGNGWVNLQTA G+VAKRAY+L+VIPE ANI +G K ++A R KRYRG PKG + + S S SG XXXXXXXXXXXXX F+ XXXXXXXXXXX RYD ++R +RG R FP G+R+GGGE K SG+ MS + D G + + DR R G G+ +GG KGDS++ G+ K D D GG+RAKR++ S + DS++++ G + RERVDRS +K A K E+ +K+SW+ Q+ KAK+RPNLV WR+EL+ TKDSSEDFEDATLSVELM+ RCDVCYHEK+DGDKFCWN++CW SPVF GY +G +D I P ++ G +N F +ET+IDPALTSALQAPVKWLETKRKR LE HEVFSEDPALYRWQCWAS +PNSKDPTFV+D R
Sbjct: 17 RSGDGDATNGASRNRGLRQDHPERGAASEDDDNEDSKADSDGIRRGPLSSASDR-------PKGHATSDRKDEFPLISVPLDTWVGRFVRITTPRHNGTTGLVHRTGNGWVNLQTALGDVAKRAYDLVVIPEERANIGSIGGMLKADAA-RGKRYRGGPKGGAA---VGSNSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEXXXXXXXXXXXXXXXHRYDGGAKMRNVSRGGGRGFPXXXXXXXXXXXXX--REKGDRYGGGEPVKSSGR----MSITFTRQDGGGGAKQRGRGGEYDRMREXXXGGRGEALKGGAGRDRDGMKGDSFLPIGRHKEKDSDVGGSRAKRRDVISHCSA-GDSEDKVGAGGSYRERVDRSSNKLVAANKKDEEVIKSSWVHQMQKAKERPNLVHWRDELVAITKDSSEDFEDATLSVELMRVRCDVCYHEKSDGDKFCWNEKCWMSPVFSGYCHTGA--NDE-----VIAPTPVQQSAGYINTFGRETLIDPALTSALQAPVKWLETKRKRKLEAHEVFSEDPALYRWQCWASLSKNPNSKDPTFVEDPRF 593
BLAST of mRNA_H-paniculata_contig694.14880.1 vs. uniprot
Match: A0A6H5JHP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP0_9PHAE) HSP 1 Score: 264 bits (675), Expect = 1.830e-77 Identity = 240/519 (46.24%), Postives = 295/519 (56.84%), Query Frame = 1
Query: 34 GPPSPVSRVPPRSSVPARVAADAPRRGSPVERT--GRSGEGDATNGRVRSRG-----PSR------NDNQDDDGPSXXXXXXXXSGMSARNGTPTLSPLYRYTHLVQDEYVLTSFPLDTWVGRYVRITTPRHNGQTGKVHRTGNGWVNLQTAGGEVAKRAYNLIVIPESLANITPVGLDDKGESASRAKRYRG-PKGQSYPSGIESASASGDERKPTARGRNSRAPAPTAHSSSXXXXXXXXXXXXXDEHDNGRPPRRRGRATLGGSDFDEADXXXXXXXXXXXD-RYDDDGRVRGPARG--RPFPPSKHSRAMMKSMHGGDGTGERFGGGEFGKDSGKPPGKMSSKYVGPDKGRARVKSDQEKMRDRGR-----GIGDQPRGG--------KGDSYMLSGKVKGADPDAGGARAKRKEPSSALNPPCDSDERMVPGSTNRERVDRSKDKPGAPGPKKEDGMKNSWLSQIAKAKDRPNLVRWREELLPTTKDSSEDFEDATLSVELMKGRCDVCYHEKA 1500
GPPSP +RVPP +VPARV+ + RR +R RSG+GDAT G R+RG P R +DN+D S S S R P T +DE+ L S PLDTWVGR+VRITTPRHNG TG VHRTGNGWVNLQTA G+VAKRAY+L+VIPE AN+ +G K ++A R KRYRG PKG + + S S SGDERK RN XXXXXXXXXXXXX XXXXXXXXXXX RYD +R +RG R FP SR M K G G+R+GGGE K SG+ MS + D G + + DR R G G+ +GG KGD+++ G+ K D D GG+R KR++ S + DS++++ G + RERVDRS +K A K E+ +K+SW+ Q+ KAK+RPNLV WR+EL+ TKDSSEDFED TLSVELM+ RCDVCYHEK+
Sbjct: 5 GPPSPATRVPPERNVPARVSMEGSRRNIADDRGEGARSGDGDATTGASRNRGLRQDHPERGAASEDDDNEDSKADSDGIRRGPLSSASDR-------PKGHATSDSKDEFPLISVPLDTWVGRFVRITTPRHNGTTGLVHRTGNGWVNLQTALGDVAKRAYDLVVIPEERANVGSIGGMLKADAA-RGKRYRGGPKGGAA---VGSNSGSGDERKGGGPSRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRYDGGANMRNVSRGGGRGFPGGGRSRTMAKG--GVREKGDRYGGGEPVKSSGR----MSITFTRQDGGGGAKQRGRGGEYDRMREXXXGGRGEALKGGAGRDRDGMKGDNFIPIGRHKEKDSDVGGSRTKRRDVISH-SAAGDSEDKLGAGGSYRERVDRSSNKLVAVNKKDEEVIKSSWVHQMQKAKERPNLVHWRDELVAITKDSSEDFEDVTLSVELMRVRCDVCYHEKS 505
BLAST of mRNA_H-paniculata_contig694.14880.1 vs. uniprot
Match: A0A835Z2T4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2T4_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.960e-26 Identity = 71/209 (33.97%), Postives = 96/209 (45.93%), Query Frame = 1
Query: 1330 KNSWLSQIAKAKDRPNLVRWREELLPTTKDSSEDFEDATLSVELMKGRCDVCYHEKADGDKFCWNDECWRSPVFFGYFKSGP------------------FGSDSGNGGGRIEPPSTRRKEGL-------------------------NFFAKETVIDPALTSALQAPVKWLETKRKRNLETHEVFSEDPALYRWQCWASNFPDPNSKD 1827
+ W QI + ++RPNL WR+++ + ++ +D E L+ +LM RC VCY EK DGD+FCWN EC SP+F + K P FG + G + +P + EG N F + T++D AL L APVKWLE KR++ PALYRWQCWAS DP D
Sbjct: 566 RRQWDVQIQRGRERPNLTHWRDQIDASAREPDQDPEAVDLNFDLMPLRCCVCYVEKPDGDRFCWNSECLASPIFEEFVKPIPGVPSASLVKEDHKDASKGFGGGDKSVGVKKDPDAMDTDEGAPRAQRSGSLTTKGEEGDEEKKLPYENTFKRTTLVDDALAYVLHAPVKWLEAKRRKGTPFESFSLASPALYRWQCWASLEDDPAVSD 774
BLAST of mRNA_H-paniculata_contig694.14880.1 vs. uniprot
Match: A0A6U4F2P5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F2P5_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 2.330e-9 Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 325 VLTSFPLDTWVGRYVRITTPRHNGQTGKVHRTGNGWVNLQTAGGEVAKRAYNLIVIPESLANITPVGLDDKGESASRAKRYRGPK 579
+L++ +TW + V+I R G TG+V R+GNGWV LQTA GEVAKRAY L ++P S N P G E + + R G K
Sbjct: 99 LLSTVDAETWNNKMVKIKAGRFTGHTGRVLRSGNGWVQLQTAMGEVAKRAYELQLLPASEQNKQPSGPSGDSEKSRKRNRSGGMK 183
BLAST of mRNA_H-paniculata_contig694.14880.1 vs. uniprot
Match: A0A7R9UGB2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGB2_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.070e-8 Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 325 VLTSFPLDTWVGRYVRITTPRHNGQTGKVHRTGNGWVNLQTAGGEVAKRAYNLIVIPESLANITPVG 525
+L++ D W+ + VRI R G TG+V R+GNGWV LQTA GEVAKRAY L ++P S + P G
Sbjct: 108 LLSAVDADVWINKLVRIKGGRFTGHTGRVLRSGNGWVQLQTAMGEVAKRAYELQLLPSSEQDQEPSG 174
BLAST of mRNA_H-paniculata_contig694.14880.1 vs. uniprot
Match: A0A7S4E8A6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8A6_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.090e-6 Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query: 274 PTLSPLYRYTHLVQDEYVLTSFPLDTWVGRYVRITTPRHNGQTGKVHRTGNGWVNLQTAGGEVAKRAYNLIVIPE 498
P P R L+ + + WVG +VR+ R GQ G++ R+GNGWV L+TA GE+AKRAY L ++ E
Sbjct: 171 PQQKPRGRGARLLSSVLTGRAVDAERWVGTHVRVRVGRLGGQVGRILRSGNGWVQLRTARGEIAKRAYELELVDE 245
BLAST of mRNA_H-paniculata_contig694.14880.1 vs. uniprot
Match: A0A7S3M8E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8E2_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.370e-5 Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 325 VLTSFPLDTWVGRYVRITTPRHNGQTGKVHRTGNGWVNLQTAGGEVAKRAYNLIVI 492
+L++ ++WVG+ V++ + RH GQ G V +GNGWV ++T+ GEVAKRAY L V+
Sbjct: 200 LLSNTDPESWVGQRVQVASGRHAGQQGTVVSSGNGWVQIETSVGEVAKRAYELQVV 255 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig694.14880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig694.14880.1 >prot_H-paniculata_contig694.14880.1 ID=prot_H-paniculata_contig694.14880.1|Name=mRNA_H-paniculata_contig694.14880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=624bp MASSQSTAGGSGPPSPVSRVPPRSSVPARVAADAPRRGSPVERTGRSGEGback to top mRNA from alignment at H-paniculata_contig694:9965..17432+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig694.14880.1 ID=mRNA_H-paniculata_contig694.14880.1|Name=mRNA_H-paniculata_contig694.14880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7468bp|location=Sequence derived from alignment at H-paniculata_contig694:9965..17432+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig694:9965..17432+ >mRNA_H-paniculata_contig694.14880.1 ID=mRNA_H-paniculata_contig694.14880.1|Name=mRNA_H-paniculata_contig694.14880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3744bp|location=Sequence derived from alignment at H-paniculata_contig694:9965..17432+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |