mRNA_H-paniculata_contig6938.14876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6938.14876.1
Unique NamemRNA_H-paniculata_contig6938.14876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6938.14876.1 vs. uniprot
Match: D7FKK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK9_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 2.290e-35
Identity = 75/141 (53.19%), Postives = 90/141 (63.83%), Query Frame = 1 
Query:    1 NKMLQPKFDQLAEIAESEGDS-AEPFRVLMSGDSTMRHQYGAVCAFLGERPGSRFNSSVRGLLQNHPGCCVDTL--EDGG-----RGLCFDFKYYRFLSATSFHSTYMDAFYIGSGLHLLHM------MYAGQFLEPLRVQ 381
            NK +Q K D LA IAE   D+  EPFRVLM GDSTM HQ+GA+C F+GER G RF+  V  +    PGCC+DTL  EDGG     RGLCF + ++RFL       T +DA+Y GSGLHLLHM      M+    +EPLRVQ
Sbjct:   53 NKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEV--IQGRAPGCCMDTLPKEDGGEGGGGRGLCFQYDHFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHP---MEPLRVQ 188
[Close]
BLAST of mRNA_H-paniculata_contig6938.14876.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 8.480e-34
Identity = 75/141 (53.19%), Postives = 91/141 (64.54%), Query Frame = 1 
Query:    1 NKMLQPKFDQLAEIAESEGDS-AEPFRVLMSGDSTMRHQYGAVCAFLGERPGSRFNSSVRGLLQNHPGCCVDTL--EDGG-----RGLCFDFKYYRFLSATSFHSTYMDAFYIGSGLHLLHM------MYAGQFLEPLRVQ 381
            NK +Q K D LA IAE   D+  EPFRVLM GDSTM HQ+GA+C F+GER G RF+  V  + ++ PGCC+DTL  EDGG     RGLCF +  +RFL       T +DA+Y GSGLHLLHM      M+    +EPLRVQ
Sbjct:   53 NKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEV--IQRSAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHP---MEPLRVQ 188
[Close]
BLAST of mRNA_H-paniculata_contig6938.14876.1 vs. uniprot
Match: D7FJP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.580e-25
Identity = 61/126 (48.41%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:   19 KFDQLAEIAESE--GDSAEPFRVLMSGDSTMRHQYGAVCAFLGERPGSRFNSSVRGLLQNHPGCCVDTLEDGGRGLCFDFKYYRFLSATSFHSTYMDAFYIGSGLHLLHMMYAGQFL---EPLRVQ 381
            K D LA + E++  G   +PFRVLM GDSTMRHQYGA+C F+GER G R+N    G               GGRGLCF+    RFL       T +DA+Y GSGLHLLHM+     +   EPLRVQ
Sbjct:   64 KLDVLAALVENQQGGRREQPFRVLMVGDSTMRHQYGALCGFMGERGGRRYNPREEG---------------GGRGLCFELDQLRFLDPKRAGETSVDAYYFGSGLHLLHMLPHWPEMNPMEPLRVQ 174
[Close]
BLAST of mRNA_H-paniculata_contig6938.14876.1 vs. uniprot
Match: D7FJP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 6.970e-24
Identity = 59/112 (52.68%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:   85 MSGDSTMRHQYGAVCAFLGERPGSRFNSSVRGLLQNHPGCCVDTL--ED-----GGRGLCFDFKYYRFLSATSFHSTYMDAFYIGSGLHLLHM------MYAGQFLEPLRVQ 381
            M GDSTM HQYGA+C F+GER G R++          PGCC+DTL  ED     GGRGLCF+F  +RFL       T +DA+Y GSGLHLLHM      MY    +EPLRVQ
Sbjct:    1 MVGDSTMSHQYGAICGFMGEREGRRYDPEK--AQHGSPGCCMDTLPKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDAYYFGSGLHLLHMYPHWPEMYP---MEPLRVQ 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6938.14876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKK9_ECTSI2.290e-3553.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJN9_ECTSI8.480e-3453.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP2_ECTSI2.580e-2548.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP0_ECTSI6.970e-2452.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6938contigH-paniculata_contig6938:11017..11872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6938.14876.1prot_H-paniculata_contig6938.14876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6938 11023..11872 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930833.632423-UTR-H-paniculata_contig6938:11016..110221622930833.632423-UTR-H-paniculata_contig6938:11016..11022Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6938 11017..11022 +
1691481473.0593145-UTR-H-paniculata_contig6938:11016..110221691481473.0593145-UTR-H-paniculata_contig6938:11016..11022Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6938 11017..11022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930833.6447449-CDS-H-paniculata_contig6938:11022..112011622930833.6447449-CDS-H-paniculata_contig6938:11022..11201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6938 11023..11201 +
1691481473.067725-CDS-H-paniculata_contig6938:11022..112011691481473.067725-CDS-H-paniculata_contig6938:11022..11201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6938 11023..11201 +
1622930833.6647623-CDS-H-paniculata_contig6938:11670..118721622930833.6647623-CDS-H-paniculata_contig6938:11670..11872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6938 11671..11872 +
1691481473.0764515-CDS-H-paniculata_contig6938:11670..118721691481473.0764515-CDS-H-paniculata_contig6938:11670..11872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6938 11671..11872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6938.14876.1

>prot_H-paniculata_contig6938.14876.1 ID=prot_H-paniculata_contig6938.14876.1|Name=mRNA_H-paniculata_contig6938.14876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MLQPKFDQLAEIAESEGDSAEPFRVLMSGDSTMRHQYGAVCAFLGERPGS
RFNSSVRGLLQNHPGCCVDTLEDGGRGLCFDFKYYRFLSATSFHSTYMDA
FYIGSGLHLLHMMYAGQFLEPLRVQQ*
back to top

mRNA from alignment at H-paniculata_contig6938:11017..11872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6938.14876.1 ID=mRNA_H-paniculata_contig6938.14876.1|Name=mRNA_H-paniculata_contig6938.14876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=856bp|location=Sequence derived from alignment at H-paniculata_contig6938:11017..11872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAAGATGCTGCAACCGAAGTTTGACCAGCTAGCGGAGATAGCAGAGAG
CGAAGGAGACTCGGCGGAGCCCTTCCGAGTGCTTATGTCTGGCGACTCCA
CCATGAGGCACCAGTATGGGGCCGTGTGCGCATTCCTGGGCGAGCGACCG
GGGAGTCGTTTCAATTCTTCGGTACGAGGTCTATTGTAACAGCTGCTTGT
AGTATAGTGCAGTGACGGCGAAGGCGGTTCTGTTTTTTTTTTGTTTTTTT
TGTTTTTGAAATCCTTTCATTCGAAACCCGTGGTTCATCCACGAAGGCTT
CCTGCGCTTGCTAACTGTGACTGCTGCCTGTGCTCGCATGCAGGCATACG
TAACGTTAAGTAAACAGTCGTTTTAGAAAGTCGCTTGAAAGTGCAGGTTT
AAAAAAAGTGTTCCGAAAACACATTGCACGTACCAGTCAAACGAGTATCG
CCTCGCCTTCGTGCAGTCACGACTACGCTCCTTCTTCAACGTCAAAGTGT
TTTTGTTTGTTTCCGTGCCCTGTCGTGAAAGCTCACTGTATTCCCTTTGT
TTTCTTGGGTGTATGACATACTTGGTCAATTGTTCTTCTATTTTTCGCTG
TTTTTTGCTGTTGCTGTTGCTGCTGCTGCTGCTGCTCTTTTCGCACCAGG
AAAGACAAAATCACCCTGGATGCTGTGTCGACACCCTGGAGGATGGTGGT
CGCGGACTGTGTTTCGACTTCAAGTATTACCGGTTCCTGAGCGCAACTTC
TTTTCATAGCACGTACATGGATGCCTTCTATATTGGTTCTGGCCTTCACC
TGTTGCACATGATGTACGCGGGCCAGTTTCTGGAGCCGCTGCGGGTTCAA
CAGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6938:11017..11872+

>mRNA_H-paniculata_contig6938.14876.1 ID=mRNA_H-paniculata_contig6938.14876.1|Name=mRNA_H-paniculata_contig6938.14876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig6938:11017..11872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCAACCGAAGTTTGACCAGCTAGCGGAGATAGCAGAGAGCGAAGG
AGACTCGGCGGAGCCCTTCCGAGTGCTTATGTCTGGCGACTCCACCATGA
GGCACCAGTATGGGGCCGTGTGCGCATTCCTGGGCGAGCGACCGGGGAGT
CGTTTCAATTCTTCGGTACGAGGTCTATTATGCTGCAACCGAAGTTTGAC
CAGCTAGCGGAGATAGCAGAGAGCGAAGGAGACTCGGCGGAGCCCTTCCG
AGTGCTTATGTCTGGCGACTCCACCATGAGGCACCAGTATGGGGCCGTGT
GCGCATTCCTGGGCGAGCGACCGGGGAGTCGTTTCAATTCTTCGGTACGA
GGTCTATTACAAAATCACCCTGGATGCTGTGTCGACACCCTGGAGGATGG
TGGTCGCGGACTGTGTTTCGACTTCAAGTATTACCGGTTCCTGAGCGCAA
CTTCTTTTCATAGCACGTACATGGATGCCTTCTATATTGGTTCTGGCCTT
CACCTGTTGCACATGATGTACGCGGGCCAGTTTCTGGAGCCGCTGCGGGT
TCAACAGTGAACAAAATCACCCTGGATGCTGTGTCGACACCCTGGAGGAT
GGTGGTCGCGGACTGTGTTTCGACTTCAAGTATTACCGGTTCCTGAGCGC
AACTTCTTTTCATAGCACGTACATGGATGCCTTCTATATTGGTTCTGGCC
TTCACCTGTTGCACATGATGTACGCGGGCCAGTTTCTGGAGCCGCTGCGG
GTTCAACAGTGA
back to top