mRNA_H-paniculata_contig693.14868.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig693.14868.1
Unique NamemRNA_H-paniculata_contig693.14868.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 8.480e-42
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHRWRSLVCPAKEAATREELAWSKRL 416
            YD +GF GAVGSTDV HI  G  P +   +YTGKEG PT+A++ TVDHSGRVL +T+G  GA NDK+ +R+DK V  +R    Y    YKL  +DG +  EKG YL+VD GYH+WR+L+ P+K    R +L +SKRL
Sbjct:  146 YDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRL 282          
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 4.040e-41
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHRWRSLVCPAKEAATREELAWSKRL 416
            YD +GF GAVGSTDV HI  G  P +   +YTGKEG PT+A++ TVDHSGRVL +T+G  GA NDK+ +R+DK V  +R    Y    YKL  +DG +  EKG YL+VD GYH+WR+L+ P+K    R +L +SKRL
Sbjct:  237 YDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRL 373          
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.230e-37
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHRWRSLVCPAKEAATREELAWSKRL 416
            YD +GFTGA+GS DV HIA    P +    YTGKEGFPT+ Y+ TVDH+GR + +T+G  G+ NDK+TV +D  V+ +R  + Y   T+ + ++DG     KG Y++VD GYH+W+ L+ P+K   +  +L +SKRL
Sbjct:   23 YDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRL 159          
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.740e-36
Identity = 66/137 (48.18%), Postives = 89/137 (64.96%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHRWRSLVCPAKEAATREELAWSKRL 416
            YD +GF+GA GSTDV HI  G  P +    YTGKEG+PT+AY+ TVDH+ RVL +T G  G+ NDKS +R+D  V  +RE   Y    + + + DG     KG YL+VD GYH+W +L+ P+K    + +LA+SKRL
Sbjct:  221 YDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRL 357          
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 3.220e-36
Identity = 63/121 (52.07%), Postives = 77/121 (63.64%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHRWRSLVCP 368
            YD +G TGA+GSTDV HI  G  P +    YTGKEGFPT+AY+ TVDH+GR + +T G  GA NDK+ +R+D  V  ++    Y   TYKLR  DG  +  KG YLIVD GYH   SL  P
Sbjct:    4 YDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLRRADGTFRERKGCYLIVDNGYHEVNSLGHP 124          
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 9.680e-35
Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHRWRSLVCPAKEAATREELAWSKRL 416
            +  +G+TGA GSTDV HI     P +    +TGKEGFPT+AY+ TVDH GR L +T G  GA NDK+ +R+D  V  +R    Y    YKLR  +G +++ +G +LIVD GYH W +L+ P+K     E+ A+S+ L
Sbjct:   99 FHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDL 235          
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.870e-33
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHRWRSLVCPAKEAATREELAWSKRL 416
            Y+ +GF GA+GSTDV HI     P +    YTGKEG PT+ Y+ TV+H+GRVL +T+G  G+ NDK+ +  D+ V  +R  + Y    + +  KDG  +  KG YLIVD GYH+WR L+ P+K   +  +L +SKRL
Sbjct:  192 YEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRL 328          
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.030e-32
Identity = 62/121 (51.24%), Postives = 76/121 (62.81%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHRWRSLVCP 368
            YD +G TGA+GSTDV HI  G  P +    YTGKEGFPT+AY+ TVDH+GR + +T G  GA NDK+ +R+D  V  ++    Y   TYKLR  DG  +  KG Y IVD GYH   SL  P
Sbjct:  313 YDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHP 433          
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.740e-32
Identity = 67/136 (49.26%), Postives = 84/136 (61.76%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHRWRSLVCPAKEAATREELAWSKR 413
            Y  +G  GAV S D  HI+    P S T+ + GKEG+ TL YEA+ DHSGR+L  TKG  GA NDK+ V+ D  V  +RE EP+ S  + L D +G      G +LIVDGGYHR  SL+CP KE A+  +  WSKR
Sbjct:  175 YGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKR 310          
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.490e-32
Identity = 58/114 (50.88%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    6 YDAVGFTGAVGSTDVIHIA*GCTPASHTHLYTGKEGFPTLAYEATVDHSGRVLGMTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGIYLIVDGGYHR 347
            YD +GFTGA+GSTDV HI     P S    YTGKEG P++AY+A VDH+GR+L +TKG AGA+NDK+ + +D  V  +R    Y    Y L DK+G     KG Y IVD GY++
Sbjct:    4 YDLLGFTGAIGSTDVTHIRWAFCPYSWARQYTGKEGLPSIAYQAIVDHTGRILAVTKGFAGAMNDKTIIWYDTAVAKIRRDPVYTEKVYTLSDKNGQPFERKGNYSIVDNGYNK 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig693.14868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE8.480e-4253.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE4.040e-4153.28Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI2.230e-3745.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAU4_9PHAE2.740e-3648.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG32_9PHAE3.220e-3652.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE9.680e-3545.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE2.870e-3345.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE1.030e-3251.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.740e-3249.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J792_9PHAE4.490e-3250.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig693contigH-paniculata_contig693:1669..2696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size417
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig693.14868.1prot_H-paniculata_contig693.14868.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig693 1836..2696 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930832.9013774-UTR-H-paniculata_contig693:1668..18351622930832.9013774-UTR-H-paniculata_contig693:1668..1835Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig693 1669..1835 +
1691481472.7512736-UTR-H-paniculata_contig693:1668..18351691481472.7512736-UTR-H-paniculata_contig693:1668..1835Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig693 1669..1835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930832.9182084-CDS-H-paniculata_contig693:1835..20151622930832.9182084-CDS-H-paniculata_contig693:1835..2015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig693 1836..2015 +
1691481472.763884-CDS-H-paniculata_contig693:1835..20151691481472.763884-CDS-H-paniculata_contig693:1835..2015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig693 1836..2015 +
1622930832.942642-CDS-H-paniculata_contig693:2627..26961622930832.942642-CDS-H-paniculata_contig693:2627..2696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig693 2628..2696 +
1691481472.7724414-CDS-H-paniculata_contig693:2627..26961691481472.7724414-CDS-H-paniculata_contig693:2627..2696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig693 2628..2696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig693.14868.1

>prot_H-paniculata_contig693.14868.1 ID=prot_H-paniculata_contig693.14868.1|Name=mRNA_H-paniculata_contig693.14868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MTKGMAGAVNDKSTVRFDKKVQAVREGEPYRSMTYKLRDKDGVEQVEKGI
YLIVDGGYHRWRSLVCPAKEAATREELAWSKRL
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mRNA from alignment at H-paniculata_contig693:1669..2696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig693.14868.1 ID=mRNA_H-paniculata_contig693.14868.1|Name=mRNA_H-paniculata_contig693.14868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1028bp|location=Sequence derived from alignment at H-paniculata_contig693:1669..2696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCGTACGATGCGGTGGGCTTCACCGGGGCAGTAGGCTCGACTGATGTC ATCCACATCGCATAGGGTTGCACCCCGGCATCACATACCCATCTCTACAC GGGCAAGGAAGGATTCCCGACTCTCGCATACGAGGCGACGGTAGACCACT CGGGGAGGGTATTGGGGATGACGAAGGGAATGGCTGGAGCAGTGAACGAT AAATCCACCGTTCGTTTCGACAAGAAAGTTCAAGCGGTTAGGGAGGGTGA GCCGTACAGGTCGATGACTTACAAGCTCCGCGACAAGGACGGCGTGGAAC AGGTGGAGAAGGGTATTTACCTCATCGTCGACGGAGGATATCACCGGGTG AGTCACCTGCTGTTGTTTGATGATCATTGCTGCTGCACCATCCTATTGAA ATGCGTGGTATAGTTTTACGTTATGCGGCGACAATTTCTTCGTTTCTGAC AAGCATACCCCGTTTACTGTTGTGCATAAACCACACCCCACGTACGATGT ACGACTTTGTTGACCCCAACGTCAATGGCTGCCCGATGTCCCACTTTGTG AGCCGCAGCTCTAGACTCACCGGACATTTGTTTCAAATATTACCGCCAGA CGAGGTGGAAACTATGAGACAGCAAGTTTCCTTGACATAGGTAGCAGCTA CGCGAAATCCGTAGGTCGTACTACATGGCGTATCTTGTTTAAAGTGCAGG CCATGCCACCGTTGACAAGGACTTTGCTACGATAATAATGCCCTTCTTTC TCTTTGTTTATGATCGGTTTCAGCCGTCGATGTTGTTGATGTCGTCTTCA GCTTCAATTTCCTCTATATACCGGTGAGTGCTCACTGATAAAGGCTGAGA TAAATCGTACAAGCCGGGCGTGTCAATATCTGACACGGTTGGCCAGACGC TGCATAAGAACAACGTGTATCGACACTACTGTTTTCTCGTTTCCCACTCT TATTTGCAGTGGAGGAGTCTAGTGTGCCCGGCAAAAGAAGCTGCAACTCG AGAGGAATTAGCGTGGAGTAAACGTCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig693:1669..2696+

>mRNA_H-paniculata_contig693.14868.1 ID=mRNA_H-paniculata_contig693.14868.1|Name=mRNA_H-paniculata_contig693.14868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig693:1669..2696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAGGGAATGGCTGGAGCAGTGAACGATAAATCCACCGTTCGTTT
CGACAAGAAAGTTCAAGCGGTTAGGGAGGGTGAGCCGTACAGGTCGATGA
CTTACAAGCTCCGCGACAAGGACGGCGTGGAACAGGTGGAGAAGGGTATT
TACCTCATCGTCGACGGAGGATATCACCGGATGACGAAGGGAATGGCTGG
AGCAGTGAACGATAAATCCACCGTTCGTTTCGACAAGAAAGTTCAAGCGG
TTAGGGAGGGTGAGCCGTACAGGTCGATGACTTACAAGCTCCGCGACAAG
GACGGCGTGGAACAGGTGGAGAAGGGTATTTACCTCATCGTCGACGGAGG
ATATCACCGGTGGAGGAGTCTAGTGTGCCCGGCAAAAGAAGCTGCAACTC
GAGAGGAATTAGCGTGGAGTAAACGTCTCTGGAGGAGTCTAGTGTGCCCG
GCAAAAGAAGCTGCAACTCGAGAGGAATTAGCGTGGAGTAAACGTCTC
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