mRNA_H-paniculata_contig6917.14846.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6917.14846.1
Unique NamemRNA_H-paniculata_contig6917.14846.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6917.14846.1 vs. uniprot
Match: D8LJ14_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ14_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.140e-47
Identity = 86/156 (55.13%), Postives = 107/156 (68.59%), Query Frame = 1 
Query:    1 MTIYGIGGVSGTGKTHFRTKTCNALRNARSADIAEVYDRSTAAGQANLNWRVALERFKSIVRALLEADRTGDIVLEAFFKVGGEQRRMVEDLAREFRVDVKWGWASGSRAECQSRVESA-SNTDLEERKNARLEFIRCADIRYFREREGESLRALA 465
            MTIYGIGGVSGTGKTHFRT +C   R+ R  DIA+VY+ S A G  +++WR AL+ F+  VR  LE DR+ DIVLEAFF+  G QR+ +E +AR F VDV WGWA   RA+C SRV +     D  ER+  RL FI+ A+  +FRER  ESL +LA
Sbjct:    1 MTIYGIGGVSGTGKTHFRT-SCEGFRDVRVLDIADVYEESLAQGHPDMHWRTALQVFQGRVRGWLEEDRSSDIVLEAFFRPDGAQRQAIEAIARGFGVDVIWGWAWAPRADCLSRVSNERGGHDSSERRQKRLSFIKTAESSFFRERPEESLASLA 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6917.14846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ14_ECTSI2.140e-4755.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6917contigH-paniculata_contig6917:191..1044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-20_002290.1
Exons2
Model size465
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.0131328-CDS-H-paniculata_contig6917:190..3531622930830.0131328-CDS-H-paniculata_contig6917:190..353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6917 191..353 -
1691481471.5326653-CDS-H-paniculata_contig6917:190..3531691481471.5326653-CDS-H-paniculata_contig6917:190..353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6917 191..353 -
1622930830.034086-CDS-H-paniculata_contig6917:742..10441622930830.034086-CDS-H-paniculata_contig6917:742..1044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6917 743..1044 -
1691481471.5461442-CDS-H-paniculata_contig6917:742..10441691481471.5461442-CDS-H-paniculata_contig6917:742..1044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6917 743..1044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6917.14846.1prot_H-paniculata_contig6917.14846.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6917 191..1044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6917.14846.1

>prot_H-paniculata_contig6917.14846.1 ID=prot_H-paniculata_contig6917.14846.1|Name=mRNA_H-paniculata_contig6917.14846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MTIYGIGGVSGTGKTHFRTKTCNALRNARSADIAEVYDRSTAAGQANLNW
RVALERFKSIVRALLEADRTGDIVLEAFFKVGGEQRRMVEDLAREFRVDV
KWGWASGSRAECQSRVESASNTDLEERKNARLEFIRCADIRYFREREGES
LRALA
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mRNA from alignment at H-paniculata_contig6917:191..1044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6917.14846.1 ID=mRNA_H-paniculata_contig6917.14846.1|Name=mRNA_H-paniculata_contig6917.14846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=854bp|location=Sequence derived from alignment at H-paniculata_contig6917:191..1044- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGATCTACGGCATTGGCGGAGTCTCGGGCACAGGTAAAACGCACTT
TCGCACGAAAACGTGTAATGCACTCCGGAACGCGCGATCGGCTGACATCG
CTGAAGTGTATGATCGGTCCACTGCTGCGGGCCAGGCAAATCTGAACTGG
CGGGTAGCTTTGGAGCGGTTCAAGTCCATCGTGCGGGCTTTGCTAGAAGC
GGACCGAACCGGCGACATTGTCCTGGAGGCGTTTTTTAAGGTCGGGGGAG
AGCAGCGGAGGATGGTCGAGGATCTCGCCCGGGAATTTCGAGTCGACGTC
AAGTGCGTCTTTTGGGCCCAGGTTTAACCGTCTTGTATTTTTGGATATGT
CTGTGTTGGGAGGGATGTTCTCTCTTGATGTAATAGCTTTAGGGCTATGG
CCGACGCATCGCAGGTCGGTATTTTGCCAGTGTTTTGTGAGGGTGGCGCG
ATGCTGTCAATTACAATGAATTACAGTGAAAGGTGATAAACTAACAGATT
TTAAGCCGCGTGCACATGAAATGGTGGTGGGTGGAAGTTCCTGTTTTTGG
AATCCGTGCAGTTCGAACCTCCGGTGAAGTCTGATGGGTTGAATCTAGGT
CTGTTCCCCGGAAGTAGATAATAGTACCGTCCAGAGGTCTTGCAGCGACT
TCCGCATACAGTGCTGACGATCGCGTCTCGGAACACGACAGGTGGGGTTG
GGCATCAGGCAGTCGGGCGGAGTGCCAAAGCCGTGTGGAATCCGCCAGCA
ATACCGACTTGGAAGAGAGAAAAAACGCTCGCCTGGAATTCATCCGGTGT
GCGGACATTCGTTACTTCCGGGAGAGAGAGGGGGAAAGCTTGCGGGCTCT
GGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig6917:191..1044-

>mRNA_H-paniculata_contig6917.14846.1 ID=mRNA_H-paniculata_contig6917.14846.1|Name=mRNA_H-paniculata_contig6917.14846.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig6917:191..1044- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGATCTACGGCATTGGCGGAGTCTCGGGCACAGGTAAAACGCACTT
TCGCACGAAAACGTGTAATGCACTCCGGAACGCGCGATCGGCTGACATCG
CTGAAGTGTATGATCGGTCCACTGCTGCGGGCCAGGCAAATCTGAACTGG
CGGGTAGCTTTGGAGCGGTTCAAGTCCATCGTGCGGGCTTTGCTAGAAGC
GGACCGAACCGGCGACATTGTCCTGGAGGCGTTTTTTAAGGTCGGGGGAG
AGCAGCGGAGGATGGTCGAGGATCTCGCCCGGGAATTTCGAGTCGACGTC
AAATGACGATCTACGGCATTGGCGGAGTCTCGGGCACAGGTAAAACGCAC
TTTCGCACGAAAACGTGTAATGCACTCCGGAACGCGCGATCGGCTGACAT
CGCTGAAGTGTATGATCGGTCCACTGCTGCGGGCCAGGCAAATCTGAACT
GGCGGGTAGCTTTGGAGCGGTTCAAGTCCATCGTGCGGGCTTTGCTAGAA
GCGGACCGAACCGGCGACATTGTCCTGGAGGCGTTTTTTAAGGTCGGGGG
AGAGCAGCGGAGGATGGTCGAGGATCTCGCCCGGGAATTTCGAGTCGACG
TCAAGTGGGGTTGGGCATCAGGCAGTCGGGCGGAGTGCCAAAGCCGTGTG
GAATCCGCCAGCAATACCGACTTGGAAGAGAGAAAAAACGCTCGCCTGGA
ATTCATCCGGTGTGCGGACATTCGTTACTTCCGGGAGAGAGAGGGGGAAA
GCTTGCGGGCTCTGGCGGTGGGGTTGGGCATCAGGCAGTCGGGCGGAGTG
CCAAAGCCGTGTGGAATCCGCCAGCAATACCGACTTGGAAGAGAGAAAAA
ACGCTCGCCTGGAATTCATCCGGTGTGCGGACATTCGTTACTTCCGGGAG
AGAGAGGGGGAAAGCTTGCGGGCTCTGGCG
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